Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0039071 Rosa chinensis HOM05D003931 ORTHO05D004577 2.8e-182 641.7 307 100.0
FvH4_3g22400 Fragaria vesca HOM05D003931 ORTHO05D004577 5.5e-170 600.9 307 93.2
FAN11G2983 Fragaria x ananassa HOM05D003931 ORTHO05D004577 1.4e-168 596.3 307 92.5
FAN21G1679 Fragaria x ananassa HOM05D003931 ORTHO05D004577 2.0e-167 592.4 306 92.2
FAN21G3611 Fragaria x ananassa HOM05D003931 ORTHO05D004577 2.0e-167 592.4 306 92.2
FAN16G2486 Fragaria x ananassa HOM05D003931 ORTHO05D004577 1.7e-163 579.3 307 90.9
Prupe.4G210600 Prunus persica HOM05D003931 ORTHO05D004577 3.7e-142 508.4 309 79.9
MD03G1205300 Malus domestica HOM05D003931 ORTHO05D004577 1.2e-135 486.9 320 75.3
MD11G1221200 Malus domestica HOM05D003931 ORTHO05D004577 2.9e-134 482.3 313 76.7
QL08p011429 Quercus lobata HOM05D003931 ORTHO05D004577 2.4e-133 479.2 311 75.2
QL08p011634 Quercus lobata HOM05D003931 ORTHO05D004577 2.4e-133 479.2 311 75.2
QL08p011649 Quercus lobata HOM05D003931 ORTHO05D004577 2.4e-133 479.2 311 75.2
CiPaw.11G187800 Carya illinoinensis HOM05D003931 ORTHO05D004577 3.9e-131 471.9 304 74.3
Haze_09657 Corylus avellana HOM05D003931 ORTHO05D004577 6.2e-129 464.5 313 70.6
Cfa020372 Carpinus fangiana HOM05D003931 ORTHO05D004577 1.5e-127 459.9 302 72.5
Hma1.2p1_1271F.1_g271720 Hydrangea macrophylla HOM05D003931 ORTHO05D004577 1.1e-125 453.8 304 72.7
ClCG10G005490 Citrullus lanatus HOM05D003931 ORTHO05D004577 6.0e-124 448.0 318 68.9
TWI38G0918 Tripterygium wilfordii HOM05D003931 ORTHO05D004577 1.0e-123 447.2 302 71.2
Atru.chr2.3378 Acer truncatum HOM05D003931 ORTHO05D004577 3.3e-122 442.2 310 69.4
MELO3C025390.2 Cucumis melo HOM05D003931 ORTHO05D004577 9.5e-122 440.7 313 68.1
CsaV3_3G005230 Cucumis sativus L. HOM05D003931 ORTHO05D004577 9.5e-122 440.7 313 68.1
CANSAT64G1454 Cannabis sativa HOM05D003931 ORTHO05D004577 6.2e-121 438.0 297 70.4
Potri.001G424700 Populus trichocarpa HOM05D003931 ORTHO05D004577 8.1e-121 437.6 303 69.0
Manes.15G073200 Manihot esculenta HOM05D003931 ORTHO05D004577 1.8e-120 436.4 304 68.4
Sabra11G0123500 Salix brachista HOM05D003931 ORTHO05D004577 4.4e-119 431.8 301 67.8
Glyma.18G099500 Glycine max HOM05D003931 ORTHO05D004577 5.8e-119 431.4 297 70.7
Ca_14721_v3 Cicer arietinum L. HOM05D003931 ORTHO05D004577 9.8e-119 430.6 307 68.4
Sed0028072 Sechium edule HOM05D003931 ORTHO05D004577 1.3e-118 430.3 317 65.6
Dinv40740 Davidia involucrata HOM05D003931 ORTHO05D004577 1.4e-117 426.8 289 70.6
Actinidia09908 Actinidia chinensis HOM05D003931 ORTHO05D004577 2.4e-117 426.0 291 71.5
Sabra16G0288300 Salix brachista HOM05D003931 ORTHO05D004577 5.4e-117 424.9 305 66.6
TPR.G16574 Trifolium pratense HOM05D003931 ORTHO05D004577 5.4e-117 424.9 308 67.9
Eucgr.F00963 Eucalyptus grandis HOM05D003931 ORTHO05D004577 9.2e-117 424.1 290 69.7
Gorai.002G087700 Gossypium raimondii HOM05D003931 ORTHO05D004577 2.1e-116 422.9 306 66.3
Gohir.D01G065800 Gossypium hirsutum HOM05D003931 ORTHO05D004577 4.6e-116 421.8 306 66.0
Gohir.A01G078700 Gossypium hirsutum HOM05D003931 ORTHO05D004577 6.0e-116 421.4 306 66.3
Migut.M01779 Erythranthe guttata HOM05D003931 ORTHO05D004577 7.8e-116 421.0 281 69.0
Medtr3g051220 Medicago truncatula HOM05D003931 ORTHO05D004577 2.3e-115 419.5 313 65.8
Ciclev10009005m.g Citrus clementina HOM05D003931 ORTHO05D004577 3.0e-115 419.1 300 68.7
MSTRG.6909 Avicennia marina HOM05D003931 ORTHO05D004577 5.1e-115 418.3 272 72.4
Phvul.006G040800 Phaseolus vulgaris HOM05D003931 ORTHO05D004577 1.9e-114 416.4 303 66.0
Lsat_1_v5_gn_5_6120 Lactuca sativa HOM05D003931 ORTHO05D004577 3.3e-114 415.6 273 70.7
Thhalv10027264m.g Eutrema salsugineum HOM05D003931 ORTHO05D004577 9.5e-114 414.1 298 66.1
Psat5g180680 Pisum sativum HOM05D003931 ORTHO05D004577 1.2e-113 413.7 316 65.2
VMungo0540G1582 Vigna mungo HOM05D003931 ORTHO05D004577 2.8e-113 412.5 300 66.7
Nitab4.5_0001604g0100 Nicotiana tabacum HOM05D003931 ORTHO05D004577 3.6e-113 412.1 291 67.4
Carub.0007s1381 Capsella rubella HOM05D003931 ORTHO05D004577 4.7e-113 411.8 288 68.8
Glyma.08G314700 Glycine max HOM05D003931 ORTHO05D004577 6.2e-113 411.4 303 65.7
Lj6g0018199 Lotus japonicus HOM05D003931 ORTHO05D004577 1.1e-112 410.6 321 63.6
THA.LOC104809192 Tarenaya hassleriana HOM05D003931 ORTHO05D004577 1.1e-112 410.6 272 71.0
Oeu042929.1 Olea europaea HOM05D003931 ORTHO05D004577 3.1e-112 409.1 305 64.6
vmacro11735 Vaccinium macrocarpon HOM05D003931 ORTHO05D004577 4.0e-112 408.7 310 64.2
AUR62020469 Chenopodium quinoa HOM05D003931 ORTHO05D004577 5.2e-112 408.3 311 63.3
Aa31LG5G10360 Aethionema arabicum HOM05D003931 ORTHO05D004577 8.9e-112 407.5 309 65.0
EL10Ac4g07844 Beta vulgaris HOM05D003931 ORTHO05D004577 8.9e-112 407.5 290 66.6
AUR62015742 Chenopodium quinoa HOM05D003931 ORTHO05D004577 8.9e-112 407.5 283 66.4
BcaB03g12524 Brassica carinata HOM05D003931 ORTHO05D004577 3.4e-111 405.6 279 68.5
Sc03g0008690 Simmondsia chinensis HOM05D003931 ORTHO05D004577 4.4e-111 405.2 305 63.9
CAN.G337.115 Capsicum annuum HOM05D003931 ORTHO05D004577 7.6e-111 404.4 292 65.1
Nn1g03571 Nelumbo nucifera HOM05D003931 ORTHO05D004577 7.6e-111 404.4 289 65.1
Sp7g25010 Schrenkiella parvula HOM05D003931 ORTHO05D004577 1.3e-110 403.7 286 67.1
BraA01t01774Z Brassica rapa HOM05D003931 ORTHO05D004577 2.9e-110 402.5 307 64.2
Lj1C870G17 Lonicera japonica HOM05D003931 ORTHO05D004577 2.9e-110 402.5 262 73.3
arahy.Tifrunner.gnm1.ann1.07EMGU Arachis hypogaea HOM05D003931 ORTHO05D004577 4.9e-110 401.7 307 62.9
Ah.04g165790 Amaranthus hybridus HOM05D003931 ORTHO05D004577 6.4e-110 401.4 306 63.1
PGSC0003DMG400022225 Solanum tuberosum HOM05D003931 ORTHO05D004577 6.4e-110 401.4 271 67.5
Aqoxy1G03269 Aquilegia oxysepala HOM05D003931 ORTHO05D004577 8.4e-110 401.0 302 62.9
A01p18190 Brassica napus HOM05D003931 ORTHO05D004577 8.4e-110 401.0 307 63.5
BolC1t02250H Brassica oleracea HOM05D003931 ORTHO05D004577 8.4e-110 401.0 307 63.5
C01p23150 Brassica napus HOM05D003931 ORTHO05D004577 1.1e-109 400.6 309 64.1
HanXRQChr05g0159031 Helianthus annuus HOM05D003931 ORTHO05D004577 1.1e-109 400.6 302 63.6
Lsat_1_v5_gn_5_6180 Lactuca sativa HOM05D003931 ORTHO05D004577 5.4e-109 398.3 292 65.1
Lalb_Chr02g0155621 Lupinus albus HOM05D003931 ORTHO05D004577 9.2e-109 397.5 304 63.8
BraA08t34014Z Brassica rapa HOM05D003931 ORTHO05D004577 1.6e-108 396.7 298 65.1
A08p20580 Brassica napus HOM05D003931 ORTHO05D004577 2.1e-108 396.4 298 65.1
TAR626G0527 Trochodendron aralioides HOM05D003931 ORTHO05D004577 2.1e-108 396.4 293 64.2
BcaC07g38267 Brassica carinata HOM05D003931 ORTHO05D004577 7.8e-108 394.4 305 63.3
C08p10140 Brassica napus HOM05D003931 ORTHO05D004577 7.8e-108 394.4 305 63.3
BolC8t48692H Brassica oleracea HOM05D003931 ORTHO05D004577 7.8e-108 394.4 305 63.3
Cc05_g13590 Coffea canephora HOM05D003931 ORTHO05D004577 2.3e-107 392.9 318 61.6
Sopen07g032620 Solanum pennellii HOM05D003931 ORTHO05D004577 2.3e-107 392.9 272 65.8
PGR083G2742 Punica granatum HOM05D003931 ORTHO05D004577 3.9e-107 392.1 319 62.1
Solyc07g064410.1 Solanum lycopersicum HOM05D003931 ORTHO05D004577 3.9e-107 392.1 271 66.1
Thecc.07G042800 Theobroma cacao HOM05D003931 ORTHO05D004577 3.9e-107 392.1 238 72.7
AL7G25800 Arabidopsis lyrata HOM05D003931 ORTHO05D004577 5.1e-107 391.7 318 61.0
Lalb_Chr06g0171911 Lupinus albus HOM05D003931 ORTHO05D004577 1.1e-106 390.6 299 63.2
SGA_v2.0_scaffold172G38997 Striga asiatica HOM05D003931 ORTHO05D004577 1.2e-105 387.1 292 63.7
CARHR234700 Cardamine hirsuta HOM05D003931 ORTHO05D004577 1.6e-105 386.7 327 58.4
AT4G27030 Arabidopsis thaliana HOM05D003931 ORTHO05D004577 2.1e-105 386.3 307 61.9
Sc03g0008680 Simmondsia chinensis HOM05D003931 ORTHO05D004577 4.9e-102 375.2 309 59.2
DCAR_008677 Daucus carota HOM05D003931 ORTHO05D004577 1.4e-101 373.6 252 68.3
Thhalv10025879m.g Eutrema salsugineum HOM05D003931 ORTHO05D004577 9.3e-101 370.9 307 59.6
Duzib213G0550 Durio zibethinus HOM05D003931 ORTHO05D004577 2.1e-100 369.8 292 59.9
QL08p011463 Quercus lobata HOM05D003931 ORTHO05D004577 2.1e-100 369.8 240 72.9
unitig_62.g23279 Utricularia gibba HOM05D003931 ORTHO05D004577 4.6e-100 368.6 271 64.2
PSO675G5012 Papaver somniferum HOM05D003931 ORTHO05D004577 1.0e-99 367.5 309 57.9
Cfa009708 Carpinus fangiana HOM05D003931 ORTHO05D004577 1.7e-99 366.7 219 75.3
Peaxi162Scf00450g00075 Petunia axillaris HOM05D003931 ORTHO05D004577 2.3e-99 366.3 219 74.9
Sp7g24990 Schrenkiella parvula HOM05D003931 ORTHO05D004577 6.6e-99 364.8 294 58.2
Thhalv10026787m.g Eutrema salsugineum HOM05D003931 ORTHO05D004577 8.7e-99 364.4 308 57.8
Carub.0002s0286 Capsella rubella HOM05D003931 ORTHO05D004577 3.3e-98 362.5 272 61.8
Haze_23062 Corylus avellana HOM05D003931 ORTHO05D004577 4.3e-98 362.1 235 70.6
PSO541G1838 Papaver somniferum HOM05D003931 ORTHO05D004577 5.6e-98 361.7 310 57.1
Aa31LG5G10380 Aethionema arabicum HOM05D003931 ORTHO05D004577 3.6e-97 359.0 272 60.7
Nitab4.5_0004336g0020 Nicotiana tabacum HOM05D003931 ORTHO05D004577 2.4e-96 356.3 252 65.1
ATR0752G116 Amborella trichopoda HOM05D003931 ORTHO05D004577 6.9e-96 354.8 239 67.8
CARHR049940 Cardamine hirsuta HOM05D003931 ORTHO05D004577 9.0e-96 354.4 273 60.8
Rhsim06G0216100 Rhododendron simsii HOM05D003931 ORTHO05D004577 2.0e-95 353.2 199 81.4
AT1G62190 Arabidopsis thaliana HOM05D003931 ORTHO05D004577 3.4e-95 352.4 273 61.2
Prupe.4G210500 Prunus persica HOM05D003931 ORTHO05D004577 3.4e-95 352.4 210 76.7
CDE05G0277 Ceratophyllum demersum HOM05D003931 ORTHO05D007395 2.9e-94 349.4 241 66.0
C07p55050 Brassica napus HOM05D003931 ORTHO05D004577 8.4e-94 347.8 278 57.9
Atru.chr2.3340 Acer truncatum HOM05D003931 ORTHO05D004577 1.1e-93 347.4 234 67.1
BraA03t14771Z Brassica rapa HOM05D003931 ORTHO05D004577 1.9e-93 346.7 274 57.7
BcaC06g32716 Brassica carinata HOM05D003931 ORTHO05D004577 3.2e-93 345.9 295 56.6
A03p57020 Brassica napus HOM05D003931 ORTHO05D004577 3.2e-93 345.9 284 56.0
BolC7t46007H Brassica oleracea HOM05D003931 ORTHO05D004577 3.2e-93 345.9 278 57.2
Atru.chr2.3337 Acer truncatum HOM05D003931 ORTHO05D004577 9.3e-93 344.4 234 67.9
Sp7g25000 Schrenkiella parvula HOM05D003931 ORTHO05D004577 1.6e-92 343.6 279 59.5
vmacro11734 Vaccinium macrocarpon HOM05D003931 ORTHO05D004577 6.0e-92 341.7 237 65.4
AL4G12480 Arabidopsis lyrata HOM05D003931 ORTHO05D004577 1.3e-91 340.5 288 57.6
AT2G22890 Arabidopsis thaliana HOM05D003931 ORTHO05D004577 5.6e-90 335.1 256 60.5
BcaB03g12523 Brassica carinata HOM05D003931 ORTHO05D004577 7.4e-90 334.7 294 58.2
Carub.0004s0202 Capsella rubella HOM05D003931 ORTHO05D004577 9.6e-90 334.3 248 60.5
Lsat_1_v5_gn_5_5140 Lactuca sativa HOM05D003931 ORTHO05D004577 6.2e-89 331.6 251 61.8
PGSC0003DMG400004435 Solanum tuberosum HOM05D003931 ORTHO05D004577 1.8e-88 330.1 243 63.0
Sc03g0008670 Simmondsia chinensis HOM05D003931 ORTHO05D004577 1.3e-86 323.9 292 54.5
BcaC07g38266 Brassica carinata HOM05D003931 ORTHO05D004577 1.7e-86 323.6 294 57.1
C08p10100 Brassica napus HOM05D003931 ORTHO05D004577 1.7e-86 323.6 294 57.1
BolC8t48689H Brassica oleracea HOM05D003931 ORTHO05D004577 1.7e-86 323.6 294 57.1
CSS0050113 Camellia sinensis var. sinensis HOM05D003931 ORTHO05D004577 3.8e-86 322.4 197 74.1
AUR62015741 Chenopodium quinoa HOM05D003931 ORTHO05D004577 3.8e-86 322.4 265 55.1
BcaC07g38264 Brassica carinata HOM05D003931 ORTHO05D004577 4.9e-86 322.0 294 57.1
BraA08t34015Z Brassica rapa HOM05D003931 ORTHO05D004577 6.4e-86 321.6 294 56.1
FAN11G0561 Fragaria x ananassa HOM05D003931 ORTHO05D004577 1.4e-85 320.5 301 58.8
A08p20590 Brassica napus HOM05D003931 ORTHO05D004577 1.6e-84 317.0 294 56.5
Lj6g0018599 Lotus japonicus HOM05D003931 ORTHO05D004577 6.0e-84 315.1 300 51.0
CANSAT11G0562 Cannabis sativa HOM05D003931 ORTHO05D004577 3.9e-83 312.4 226 63.7
Cpa.g.sc97.27 Carica papaya HOM05D003931 ORTHO05D004577 4.8e-81 305.4 253 60.5
Oeu062594.1 Olea europaea HOM05D003931 ORTHO05D004577 2.6e-79 299.7 225 60.9
COL.COLO4_09644 Corchorus olitorius HOM05D003931 ORTHO05D004577 1.3e-78 297.4 281 55.2
CANSAT11G1176 Cannabis sativa HOM05D003931 ORTHO05D004577 6.7e-75 285.0 221 59.3
Eucgr.L01106 Eucalyptus grandis HOM05D003931 ORTHO05D004577 9.6e-74 281.2 298 52.3
Zm00001eb413170 Zea mays HOM05D003931 ORTHO05D004577 4.8e-73 278.9 297 49.2
QL09p032903 Quercus lobata HOM05D003931 ORTHO05D004577 6.3e-73 278.5 158 79.7
SEGI_34207 Sequoiadendron giganteum HOM05D003931 ORTHO05D004577 3.1e-72 276.2 296 49.3
BolC8t48691H Brassica oleracea HOM05D003931 ORTHO05D004577 1.2e-71 274.2 199 65.3
Mapoly0034s0071 Marchantia polymorpha HOM05D003931 ORTHO05D004577 5.0e-70 268.9 229 53.3
Os08g0187900 Oryza sativa ssp. japonica HOM05D003931 ORTHO05D004577 3.0e-67 259.6 257 49.4
Aqoxy1G03270 Aquilegia oxysepala HOM05D003931 ORTHO05D004577 3.9e-67 259.2 217 56.2
FvH4_3g22391 Fragaria vesca HOM05D003931 ORTHO05D004577 7.4e-66 255.0 295 49.5
AagrBONN_evm.TU.Sc2ySwM_368.1941 Anthoceros agrestis HOM05D003931 ORTHO05D004577 1.6e-65 253.8 229 53.7
SGA_v2.0_scaffold9G05067 Striga asiatica HOM05D003931 ORTHO05D004577 1.8e-64 250.4 238 50.0
SMO364G0503 Selaginella moellendorffii HOM05D003931 ORTHO05D004577 3.1e-64 249.6 230 52.2
Migut.H01834 Erythranthe guttata HOM05D003931 ORTHO05D004577 1.2e-63 247.7 225 52.4
Cfa009711 Carpinus fangiana HOM05D003931 ORTHO05D004577 2.0e-63 246.9 179 68.2
Pp3c13_12570 Physcomitrium patens HOM05D003931 ORTHO05D004577 1.3e-62 244.2 238 48.3
Migut.H01835 Erythranthe guttata HOM05D003931 ORTHO05D004577 1.4e-59 234.2 229 48.5
unitig_749.g13966 Utricularia gibba HOM05D003931 ORTHO05D004577 2.3e-59 233.4 223 48.9
CDE05G0281 Ceratophyllum demersum HOM05D003931 ORTHO05D004577 3.0e-59 233.0 197 57.4
Haze_23061 Corylus avellana HOM05D003931 ORTHO05D004577 4.5e-55 219.2 158 69.0
SGA_v2.0_scaffold9G05070 Striga asiatica HOM05D003931 ORTHO05D004577 4.5e-55 219.2 237 46.4
Migut.H01836 Erythranthe guttata HOM05D003931 ORTHO05D004577 1.0e-54 218.0 223 46.6
COL.COLO4_07219 Corchorus olitorius HOM05D003931 ORTHO05D004577 1.2e-52 211.1 130 70.8
MCO05G373 Micromonas commoda HOM05D003931 ORTHO05D004577 2.7e-52 209.9 191 51.3
Cre16.g673001 Chlamydomonas reinhardtii HOM05D003931 ORTHO05D004577 7.9e-52 208.4 232 47.0
Zm00001eb413200 Zea mays HOM05D003931 ORTHO05D004577 1.7e-49 200.7 243 44.0
PRCOL_00003954 Prasinoderma coloniale HOM05D003931 ORTHO05D004577 7.0e-48 195.3 221 43.0
CBR_g30523 Chara braunii HOM05D003931 ORTHO05D004577 2.6e-47 193.4 317 34.7
ECA246G1165 Erigeron canadensis HOM05D003931 ORTHO05D004577 7.7e-47 191.8 152 58.6
COL.COLO4_07218 Corchorus olitorius HOM05D003931 ORTHO05D004577 6.7e-43 178.7 109 70.6
AL3G48190 Arabidopsis lyrata HOM05D003931 ORTHO05D004577 3.0e-35 153.3 96 66.7
C01p23190 Brassica napus HOM05D003931 ORTHO05D004577 6.8e-35 152.1 87 78.2
C08p10120 Brassica napus HOM05D003931 ORTHO05D004577 2.6e-26 123.6 92 62.0
BcaC06g32715 Brassica carinata HOM05D003931 ORTHO05D004577 5.4e-16 89.4 49 75.5
unitig_26.g9960 Utricularia gibba HOM05D003931 ORTHO05D004577 6.6e-14 82.4 74 50.0
BcaC09g50623 Brassica carinata HOM05D003931 ORTHO05D004577 8.0e-12 75.5 62 58.1
unitig_26.g9959 Utricularia gibba HOM05D001404 ORTHO05D026306 4.1e-08 63.2 43 65.1


User provided reference genes

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