Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0026561 Rosa chinensis HOM05D006308 ORTHO05D007820 2.4e-136 488.8 238 100.0
FAN16G0301 Fragaria x ananassa HOM05D006308 ORTHO05D007820 5.7e-114 414.5 238 87.4
FAN21G3038 Fragaria x ananassa HOM05D006308 ORTHO05D007820 1.1e-112 410.2 238 86.1
FvH4_3g15760 Fragaria vesca HOM05D006308 ORTHO05D007820 2.6e-111 405.6 239 86.2
MD10G1202500 Malus domestica HOM05D006308 ORTHO05D007820 1.5e-103 379.8 243 77.8
Prupe.4G139700 Prunus persica HOM05D006308 ORTHO05D007820 4.4e-98 361.7 249 73.9
FAN11G0128 Fragaria x ananassa HOM05D006308 ORTHO05D007820 4.2e-93 345.1 186 91.9
FAN25G0513 Fragaria x ananassa HOM05D006308 ORTHO05D007820 1.0e-91 340.5 186 91.4
Potri.011G142900 Populus trichocarpa HOM05D006308 ORTHO05D007820 2.4e-88 329.3 243 67.5
Manes.14G016400 Manihot esculenta HOM05D006308 ORTHO05D007820 7.2e-85 317.8 246 65.0
Potri.001G458600 Populus trichocarpa HOM05D006308 ORTHO05D007820 2.1e-84 316.2 242 67.8
Ciclev10021874m.g Citrus clementina HOM05D006308 ORTHO05D007820 4.7e-84 315.1 248 64.9
Atru.chr2.1759 Acer truncatum HOM05D006308 ORTHO05D007820 6.1e-84 314.7 241 66.4
CANSAT80G1356 Cannabis sativa HOM05D006308 ORTHO05D007820 1.4e-83 313.5 242 65.7
Lj3g0010937 Lotus japonicus HOM05D006308 ORTHO05D007820 9.7e-82 307.4 219 71.2
Lalb_Chr20g0108751 Lupinus albus HOM05D006308 ORTHO05D007820 2.8e-81 305.8 207 74.9
Phvul.005G057100 Phaseolus vulgaris HOM05D006308 ORTHO05D007820 1.1e-80 303.9 222 70.3
arahy.Tifrunner.gnm1.ann1.1EF43V Arachis hypogaea HOM05D006308 ORTHO05D007820 3.1e-80 302.4 195 76.4
Sp3g11070 Schrenkiella parvula HOM05D006308 ORTHO05D007820 7.0e-80 301.2 195 75.9
CARHR087450 Cardamine hirsuta HOM05D006308 ORTHO05D007820 9.1e-80 300.8 193 75.1
AL3G24610 Arabidopsis lyrata HOM05D006308 ORTHO05D007820 2.0e-79 299.7 213 69.5
Glyma.15G255800 Glycine max HOM05D006308 ORTHO05D007820 2.7e-79 299.3 233 68.2
ClCG07G010660 Citrullus lanatus HOM05D006308 ORTHO05D007820 3.5e-79 298.9 246 63.0
Thhalv10021431m.g Eutrema salsugineum HOM05D006308 ORTHO05D007820 3.5e-79 298.9 195 74.9
CsaV3_4G007640 Cucumis sativus L. HOM05D006308 ORTHO05D007820 5.9e-79 298.1 243 62.6
TWI39G0290 Tripterygium wilfordii HOM05D006308 ORTHO05D007820 1.0e-78 297.4 240 64.2
AT3G12930 Arabidopsis thaliana HOM05D006308 ORTHO05D007820 1.3e-78 297.0 195 75.4
Sed0010671 Sechium edule HOM05D006308 ORTHO05D007820 1.3e-78 297.0 246 63.4
BolC1t05161H Brassica oleracea HOM05D006308 ORTHO05D007820 3.8e-78 295.4 217 68.2
COL.COLO4_07328 Corchorus olitorius HOM05D006308 ORTHO05D007820 5.0e-78 295.0 232 68.1
BcaC09g48280 Brassica carinata HOM05D006308 ORTHO05D007820 8.5e-78 294.3 217 67.7
CiPaw.12G004900 Carya illinoinensis HOM05D006308 ORTHO05D007820 8.5e-78 294.3 249 62.7
C01p52210 Brassica napus HOM05D006308 ORTHO05D007820 1.1e-77 293.9 195 73.3
Medtr2g069470 Medicago truncatula HOM05D006308 ORTHO05D007820 1.9e-77 293.1 195 74.9
MELO3C016177.2 Cucumis melo HOM05D006308 ORTHO05D007820 2.5e-77 292.7 243 62.1
Sabra16G0310800 Salix brachista HOM05D006308 ORTHO05D007820 2.5e-77 292.7 296 54.7
Carub.0005s0924 Capsella rubella HOM05D006308 ORTHO05D007820 3.2e-77 292.4 186 76.3
THA.LOC104822752 Tarenaya hassleriana HOM05D006308 ORTHO05D007820 4.2e-77 292.0 194 74.2
Glyma.08G172200 Glycine max HOM05D006308 ORTHO05D007820 1.2e-76 290.4 171 82.5
A01p40570 Brassica napus HOM05D006308 ORTHO05D007820 2.1e-76 289.7 195 72.8
Psat1g011160 Pisum sativum HOM05D006308 ORTHO05D007820 2.7e-76 289.3 167 82.0
Ca_03675_v3 Cicer arietinum L. HOM05D006308 ORTHO05D007820 1.0e-75 287.3 176 80.1
TPR.G9745 Trifolium pratense HOM05D006308 ORTHO05D007820 1.0e-75 287.3 173 80.3
A05p36560 Brassica napus HOM05D006308 ORTHO05D007820 2.3e-75 286.2 189 73.0
BolC5t34167H Brassica oleracea HOM05D006308 ORTHO05D007820 3.0e-75 285.8 189 72.5
BraA01t04092Z Brassica rapa HOM05D006308 ORTHO05D007820 3.0e-75 285.8 195 72.3
Duzib213G0994 Durio zibethinus HOM05D006308 ORTHO05D007820 4.0e-75 285.4 171 80.7
Gohir.A04G049000 Gossypium hirsutum HOM05D006308 ORTHO05D007820 8.8e-75 284.3 167 80.8
BraA05t22456Z Brassica rapa HOM05D006308 ORTHO05D007820 1.2e-74 283.9 189 72.5
Gorai.009G355200 Gossypium raimondii HOM05D006308 ORTHO05D007820 1.2e-74 283.9 167 80.2
QL08p064492 Quercus lobata HOM05D006308 ORTHO05D007820 1.5e-74 283.5 158 84.2
arahy.Tifrunner.gnm1.ann1.HXV25C Arachis hypogaea HOM05D006308 ORTHO05D007820 9.8e-74 280.8 224 65.2
Sed0016869 Sechium edule HOM05D006308 ORTHO05D007820 9.8e-74 280.8 241 60.2
Aa31LG8G150 Aethionema arabicum HOM05D006308 ORTHO05D007820 2.2e-73 279.6 170 77.1
Thecc.07G152500 Theobroma cacao HOM05D006308 ORTHO05D007820 2.2e-73 279.6 171 79.5
Gohir.D05G331300 Gossypium hirsutum HOM05D006308 ORTHO05D007820 2.8e-73 279.3 167 78.4
CSS0031885 Camellia sinensis var. sinensis HOM05D006308 ORTHO05D007820 6.3e-73 278.1 159 83.0
CSS0041769 Camellia sinensis var. sinensis HOM05D006308 ORTHO05D007820 6.3e-73 278.1 159 83.0
Eucgr.F01457 Eucalyptus grandis HOM05D006308 ORTHO05D007820 2.4e-72 276.2 189 73.0
Haze_08539 Corylus avellana HOM05D006308 ORTHO05D007820 4.1e-72 275.4 292 52.1
MBI04_g08705_MAGBIO Magnolia biondii HOM05D006308 ORTHO05D007820 2.7e-71 272.7 159 81.8
C05p54980 Brassica napus HOM05D006308 ORTHO05D007820 4.5e-71 271.9 214 64.0
GSVIVG01020411001 Vitis vinifera HOM05D006308 ORTHO05D007820 1.7e-70 270.0 156 82.7
Nn6g31547 Nelumbo nucifera HOM05D006308 ORTHO05D007820 2.3e-70 269.6 159 82.4
Ah.16g106540 Amaranthus hybridus HOM05D006308 ORTHO05D007820 2.9e-70 269.2 155 80.6
Hma1.2p1_0334F.1_g128750 Hydrangea macrophylla HOM05D006308 ORTHO05D007820 8.6e-70 267.7 155 80.6
Rhsim06G0239000 Rhododendron simsii HOM05D006308 ORTHO05D007820 1.1e-69 267.3 161 76.4
AUR62043126 Chenopodium quinoa HOM05D006308 ORTHO05D007820 1.5e-69 266.9 155 80.6
Sc06g0001530 Simmondsia chinensis HOM05D006308 ORTHO05D007820 1.9e-69 266.5 155 80.6
EL10Ac2g03321 Beta vulgaris HOM05D006308 ORTHO05D007820 9.5e-69 264.2 157 78.3
Lj1A905G40 Lonicera japonica HOM05D006308 ORTHO05D007820 1.2e-68 263.8 167 74.9
Solyc07g066460.3 Solanum lycopersicum HOM05D006308 ORTHO05D007820 3.6e-68 262.3 158 76.6
Sopen07g034640 Solanum pennellii HOM05D006308 ORTHO05D007820 3.6e-68 262.3 158 76.6
PGSC0003DMG400022127 Solanum tuberosum HOM05D006308 ORTHO05D007820 3.6e-68 262.3 158 76.6
Aqoxy5G00928 Aquilegia oxysepala HOM05D006308 ORTHO05D007820 6.1e-68 261.5 153 80.4
Peaxi162Scf00452g00832 Petunia axillaris HOM05D006308 ORTHO05D007820 1.8e-67 260.0 153 79.1
PGR083G0385 Punica granatum HOM05D006308 ORTHO05D007820 1.8e-67 260.0 170 76.5
SalBow8G4544 Salvia bowleyana HOM05D006308 ORTHO05D007820 4.0e-67 258.8 195 66.7
MSTRG.7060 Avicennia marina HOM05D006308 ORTHO05D007820 5.2e-67 258.5 159 76.1
CAN.G943.39 Capsicum annuum HOM05D006308 ORTHO05D007820 5.2e-67 258.5 158 76.6
SGA_v2.0_scaffold186G40217 Striga asiatica HOM05D006308 ORTHO05D007820 1.2e-66 257.3 153 79.7
Nitab4.5_0001080g0030 Nicotiana tabacum HOM05D004008 ORTHO05D005383 2.0e-66 256.5 153 78.4
CDE06G0902 Ceratophyllum demersum HOM05D006308 ORTHO05D007820 2.6e-66 256.1 156 77.6
vmacro11665 Vaccinium macrocarpon HOM05D006308 ORTHO05D007820 2.6e-66 256.1 160 76.2
BcaC05g29223 Brassica carinata HOM05D006308 ORTHO05D007820 3.4e-66 255.8 151 79.5
BcaB06g25499 Brassica carinata HOM05D006308 ORTHO05D007820 6.3e-65 251.5 217 59.9
Migut.M01556 Erythranthe guttata HOM05D006308 ORTHO05D007820 6.3e-65 251.5 159 74.8
Sabra11G0127800 Salix brachista HOM05D006308 ORTHO05D007820 8.3e-65 251.1 192 66.1
CDE08G1673 Ceratophyllum demersum HOM05D006308 ORTHO05D007820 1.1e-64 250.8 149 78.5
Nitab4.5_0001749g0010 Nicotiana tabacum HOM05D004008 ORTHO05D005383 1.4e-64 250.4 153 77.8
HanXRQChr10g0305791 Helianthus annuus HOM05D006308 ORTHO05D007820 2.4e-64 249.6 153 75.2
DCAR_016822 Daucus carota HOM05D006308 ORTHO05D007820 7.0e-64 248.1 155 76.1
ECA234G3728 Erigeron canadensis HOM05D006308 ORTHO05D007820 2.0e-63 246.5 153 73.9
PSO017G0504 Papaver somniferum HOM05D006308 ORTHO05D007820 3.5e-63 245.7 159 72.3
PSO170G1595 Papaver somniferum HOM05D006308 ORTHO05D007820 4.5e-63 245.4 159 72.3
Cc05_g16080 Coffea canephora HOM05D006308 ORTHO05D007820 5.0e-62 241.9 161 73.9
Hund12461 Selenicereus undatus HOM05D006308 ORTHO05D007820 8.6e-62 241.1 166 70.5
Lsat_1_v5_gn_5_125241 Lactuca sativa HOM05D006308 ORTHO05D007820 1.1e-61 240.7 153 71.2
unitig_46.g18521 Utricularia gibba HOM05D006308 ORTHO05D007820 4.3e-61 238.8 156 74.4
ATR0605G149 Amborella trichopoda HOM05D006308 ORTHO05D007820 7.3e-61 238.0 153 73.9
HPP92_015477 Vanilla planifolia HOM05D006308 ORTHO05D007820 8.9e-59 231.1 150 72.0
VMungo1080G0665 Vigna mungo HOM05D006308 ORTHO05D007820 1.2e-55 220.7 135 80.0
Oeu051665.1 Olea europaea HOM05D006308 ORTHO05D007820 3.5e-55 219.2 198 57.6
Os09g0493600 Oryza sativa ssp. japonica HOM05D006308 ORTHO05D007820 4.6e-55 218.8 171 64.3
SEGI_12516 Sequoiadendron giganteum HOM05D006308 ORTHO05D007820 1.1e-53 214.2 168 62.5
TAR381G0490 Trochodendron aralioides HOM05D006308 ORTHO05D007820 4.7e-52 208.8 122 82.8
Mapoly0031s0088 Marchantia polymorpha HOM05D006308 ORTHO05D007820 2.3e-51 206.5 151 64.9
Dinv42509 Davidia involucrata HOM05D006308 ORTHO05D007820 4.0e-51 205.7 195 59.5
Pp3c9_2790 Physcomitrium patens HOM05D006308 ORTHO05D007820 9.8e-50 201.1 162 57.4
AagrBONN_evm.TU.Sc2ySwM_228.3592 Anthoceros agrestis HOM05D006308 ORTHO05D007820 4.1e-48 195.7 143 61.5
Manes.06G172000 Manihot esculenta HOM05D006308 ORTHO05D007820 1.5e-45 187.2 143 66.4
Actinidia12793 Actinidia chinensis HOM05D006308 ORTHO05D007820 2.5e-45 186.4 154 61.7
SMO367G0472 Selaginella moellendorffii HOM05D006308 ORTHO05D007820 9.2e-40 167.9 161 54.0
Actinidia07352 Actinidia chinensis HOM05D006308 ORTHO05D007820 5.6e-37 158.7 87 82.8
Nn3g19990 Nelumbo nucifera HOM05D006308 ORTHO05D007820 9.9e-34 147.9 137 58.4
Nn3g19991 Nelumbo nucifera HOM05D006308 ORTHO05D007820 9.9e-34 147.9 137 58.4
A01p40580 Brassica napus HOM05D006308 ORTHO05D007820 4.2e-32 142.5 109 67.0
Nn3g18400 Nelumbo nucifera HOM05D006308 ORTHO05D007820 1.6e-28 130.6 84 78.6
Pp3c15_7010 Physcomitrium patens HOM05D006308 ORTHO05D007820 7.6e-26 121.7 114 48.2
MCO04G467 Micromonas commoda HOM05D006308 ORTHO05D007820 1.0e-22 111.3 116 44.8
CAN.G337.145 Capsicum annuum HOM05D006308 ORTHO05D007820 8.7e-22 108.2 139 44.6
Cre03.g205600 Chlamydomonas reinhardtii HOM05D006308 ORTHO05D007820 8.7e-22 108.2 120 44.2
PRCOL_00002538 Prasinoderma coloniale HOM05D006308 ORTHO05D007820 5.6e-21 105.5 129 40.3
Cpa.g.sc10.49 Carica papaya HOM05D006308 ORTHO05D007820 3.1e-19 99.8 124 46.8
CBR_g48397 Chara braunii HOM05D006308 ORTHO05D007820 8.7e-14 81.6 82 50.0
AUR62039167 Chenopodium quinoa HOM05D007854 ORTHO05D138328 1.5e-10 70.9 37 78.4
Actinidia07353 Actinidia chinensis HOM05D006308 ORTHO05D007820 1.7e-09 67.4 42 76.2
Zm00001eb317050 Zea mays HOM05D006308 ORTHO05D007820 1.9e-08 63.9 75 45.3
arahy.Tifrunner.gnm1.ann1.QG9RQP Arachis hypogaea HOM05D030826 ORTHO05D023738 1.3e-06 57.8 42 64.3
Prupe.1G233300 Prunus persica HOM05D006725 ORTHO05D008223 2.3e-06 57.0 108 28.7
Pp3c8_14070 Physcomitrium patens HOM05D006725 ORTHO05D008223 8.7e-06 55.1 174 25.3


User provided reference genes

Program Settings