Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0018341 Rosa chinensis HOM05D004135 ORTHO05D005558 1.9e-156 555.8 295 100.0
FvH4_3g11400 Fragaria vesca HOM05D004135 ORTHO05D005558 1.0e-144 516.9 295 92.5
FAN21G1456 Fragaria x ananassa HOM05D004135 ORTHO05D005558 1.4e-143 513.1 297 91.9
FAN16G1287 Fragaria x ananassa HOM05D004135 ORTHO05D005558 2.5e-143 512.3 297 91.9
FAN25G0882 Fragaria x ananassa HOM05D004135 ORTHO05D005558 6.1e-142 507.7 294 91.8
Prupe.4G101800 Prunus persica HOM05D004135 ORTHO05D005558 1.7e-136 489.6 295 83.1
CiPaw.09G148400 Carya illinoinensis HOM05D004135 ORTHO05D005558 9.7e-132 473.8 292 80.8
MD05G1263700 Malus domestica HOM05D004135 ORTHO05D005558 4.8e-131 471.5 295 83.7
Cfa000762 Carpinus fangiana HOM05D004135 ORTHO05D005558 5.3e-130 468.0 292 80.8
Cpa.g.sc285.5 Carica papaya HOM05D004135 ORTHO05D005558 2.7e-129 465.7 294 80.3
QL05p064858 Quercus lobata HOM05D004135 ORTHO05D005558 3.5e-129 465.3 291 81.1
CANSAT35G0477 Cannabis sativa HOM05D004135 ORTHO05D005558 5.9e-129 464.5 294 77.9
Manes.14G126900 Manihot esculenta HOM05D004135 ORTHO05D005558 5.0e-128 461.5 290 82.8
Thecc.06G007700 Theobroma cacao HOM05D004135 ORTHO05D005558 8.5e-128 460.7 295 83.1
MD10G1241400 Malus domestica HOM05D004135 ORTHO05D005558 1.1e-127 460.3 294 82.3
THA.LOC104814339 Tarenaya hassleriana HOM05D004135 ORTHO05D005558 2.5e-127 459.1 295 78.0
Duzib160G0522 Durio zibethinus HOM05D004135 ORTHO05D005558 3.2e-127 458.8 292 83.2
ClCG01G025420 Citrullus lanatus HOM05D004135 ORTHO05D005558 4.2e-127 458.4 290 79.7
MELO3C007042.2 Cucumis melo HOM05D004135 ORTHO05D005558 5.5e-127 458.0 290 79.7
Duzib235G1539 Durio zibethinus HOM05D004135 ORTHO05D005558 7.2e-127 457.6 292 81.8
CsaV3_6G052670 Cucumis sativus L. HOM05D004135 ORTHO05D005558 9.4e-127 457.2 290 79.0
THA.LOC104798582 Tarenaya hassleriana HOM05D004135 ORTHO05D005558 9.4e-127 457.2 295 77.3
Potri.011G155800 Populus trichocarpa HOM05D004135 ORTHO05D005558 2.7e-126 455.7 292 78.8
Thhalv10008349m.g Eutrema salsugineum HOM05D004135 ORTHO05D005558 6.1e-126 454.5 295 74.9
Gohir.A05G111900 Gossypium hirsutum HOM05D004135 ORTHO05D005558 8.0e-126 454.1 292 78.1
Gohir.D05G112400 Gossypium hirsutum HOM05D004135 ORTHO05D005558 1.0e-125 453.8 292 81.8
Gorai.009G116600 Gossypium raimondii HOM05D004135 ORTHO05D005558 1.4e-125 453.4 292 82.2
BcaB06g28829 Brassica carinata HOM05D004135 ORTHO05D005558 1.8e-125 453.0 295 76.9
Gorai.005G119100 Gossypium raimondii HOM05D004135 ORTHO05D005558 2.3e-125 452.6 293 78.2
Aa31LG10G6460 Aethionema arabicum HOM05D004135 ORTHO05D005558 3.0e-125 452.2 295 76.3
Aa31LG6G11870 Aethionema arabicum HOM05D004135 ORTHO05D005558 3.0e-125 452.2 295 75.9
Eucgr.D01026 Eucalyptus grandis HOM05D004135 ORTHO05D005558 5.2e-125 451.4 295 77.6
Ciclev10016127m.g Citrus clementina HOM05D004135 ORTHO05D005558 6.8e-125 451.1 293 77.8
Gohir.D02G104900 Gossypium hirsutum HOM05D004135 ORTHO05D005558 6.8e-125 451.1 293 77.8
BcaC01g05751 Brassica carinata HOM05D004135 ORTHO05D005558 1.2e-124 450.3 295 75.6
C03p22580 Brassica napus HOM05D004135 ORTHO05D005558 1.2e-124 450.3 295 75.6
Manes.06G053900 Manihot esculenta HOM05D004135 ORTHO05D005558 2.6e-124 449.1 290 77.9
GSVIVG01021747001 Vitis vinifera HOM05D004135 ORTHO05D005558 2.6e-124 449.1 290 78.3
BolC3t14655H Brassica oleracea HOM05D004135 ORTHO05D005558 4.4e-124 448.4 295 75.3
BraA03t11189Z Brassica rapa HOM05D004135 ORTHO05D005558 5.7e-124 448.0 295 74.9
A03p19330 Brassica napus HOM05D004135 ORTHO05D005558 7.5e-124 447.6 295 75.3
CAN.G675.30 Capsicum annuum HOM05D004135 ORTHO05D005558 7.5e-124 447.6 290 77.2
Sed0027064 Sechium edule HOM05D004135 ORTHO05D005558 9.8e-124 447.2 290 77.6
Sp1g26530 Schrenkiella parvula HOM05D004135 ORTHO05D005558 1.3e-123 446.8 295 74.6
Migut.M01941 Erythranthe guttata HOM05D004135 ORTHO05D005558 1.7e-123 446.4 293 78.2
Carub.0001s2889 Capsella rubella HOM05D004135 ORTHO05D005558 2.2e-123 446.0 293 75.1
BcaB07g32703 Brassica carinata HOM05D004135 ORTHO05D005558 2.8e-123 445.7 295 73.9
Gohir.A02G088700 Gossypium hirsutum HOM05D004135 ORTHO05D005558 4.8e-123 444.9 293 76.8
PGR083G2348 Punica granatum HOM05D004135 ORTHO05D005558 4.8e-123 444.9 295 76.6
Nitab4.5_0012414g0010 Nicotiana tabacum HOM05D004135 ORTHO05D005558 6.3e-123 444.5 291 76.6
HanXRQChr04g0119201 Helianthus annuus HOM05D004135 ORTHO05D005558 8.3e-123 444.1 292 77.1
Lsat_1_v5_gn_1_86700 Lactuca sativa HOM05D004135 ORTHO05D005558 8.3e-123 444.1 290 76.2
Nitab4.5_0001219g0030 Nicotiana tabacum HOM05D004135 ORTHO05D005558 8.3e-123 444.1 291 76.6
BcaC05g27087 Brassica carinata HOM05D004135 ORTHO05D005558 1.1e-122 443.7 295 73.6
C04p64030 Brassica napus HOM05D004135 ORTHO05D005558 1.1e-122 443.7 295 75.3
C05p29690 Brassica napus HOM05D004135 ORTHO05D005558 1.1e-122 443.7 295 73.6
BolC5t31698H Brassica oleracea HOM05D004135 ORTHO05D005558 1.1e-122 443.7 295 73.6
A04p26610 Brassica napus HOM05D004135 ORTHO05D005558 1.4e-122 443.4 295 75.3
Peaxi162Scf00195g00518 Petunia axillaris HOM05D004135 ORTHO05D005558 1.4e-122 443.4 290 76.6
A09p35780 Brassica napus HOM05D004135 ORTHO05D005558 1.8e-122 443.0 295 73.6
BraA09t39101Z Brassica rapa HOM05D004135 ORTHO05D005558 1.8e-122 443.0 295 73.6
Oeu060331.1 Olea europaea HOM05D004135 ORTHO05D005558 1.8e-122 443.0 291 77.3
AT1G30630 Arabidopsis thaliana HOM05D004135 ORTHO05D005558 2.4e-122 442.6 293 74.4
SalBow8G1631 Salvia bowleyana HOM05D004135 ORTHO05D005558 2.4e-122 442.6 295 77.6
SalBow8G2729 Salvia bowleyana HOM05D004135 ORTHO05D005558 2.4e-122 442.6 295 77.6
BolC4t27879H Brassica oleracea HOM05D004135 ORTHO05D005558 3.1e-122 442.2 295 75.6
BraA04t18166Z Brassica rapa HOM05D004135 ORTHO05D005558 3.1e-122 442.2 295 75.3
Sed0006315 Sechium edule HOM05D004135 ORTHO05D005558 3.1e-122 442.2 291 77.7
BcaC02g07752 Brassica carinata HOM05D004135 ORTHO05D005558 5.4e-122 441.4 295 75.3
AL1G44690 Arabidopsis lyrata HOM05D004135 ORTHO05D005558 1.2e-121 440.3 293 74.1
Medtr2g032130 Medicago truncatula HOM05D004135 ORTHO05D005558 1.2e-121 440.3 290 75.2
CARHR030110 Cardamine hirsuta HOM05D004135 ORTHO05D005558 1.6e-121 439.9 295 73.2
AT2G34840 Arabidopsis thaliana HOM05D004135 ORTHO05D005558 2.7e-121 439.1 295 74.6
TAR629G2923 Trochodendron aralioides HOM05D004135 ORTHO05D005558 2.7e-121 439.1 290 75.2
MSTRG.7569 Avicennia marina HOM05D004135 ORTHO05D005558 4.5e-121 438.3 293 76.5
Ca_00931_v3 Cicer arietinum L. HOM05D004135 ORTHO05D005558 5.9e-121 438.0 290 75.9
DCAR_003828 Daucus carota HOM05D004135 ORTHO05D005558 1.0e-120 437.2 292 76.0
PGSC0003DMG400021137 Solanum tuberosum HOM05D004135 ORTHO05D005558 1.0e-120 437.2 290 75.5
Hma1.2p1_0300F.1_g117980 Hydrangea macrophylla HOM05D004135 ORTHO05D005558 1.3e-120 436.8 290 75.5
Thhalv10017028m.g Eutrema salsugineum HOM05D004135 ORTHO05D005558 1.7e-120 436.4 292 75.3
HanXRQChr11g0340901 Helianthus annuus HOM05D004135 ORTHO05D005558 1.7e-120 436.4 290 73.8
Sabra11G0144000 Salix brachista HOM05D004135 ORTHO05D005558 1.7e-120 436.4 307 76.9
Solyc02g069585.1 Solanum lycopersicum HOM05D004135 ORTHO05D005558 1.7e-120 436.4 290 75.2
TAR627G0684 Trochodendron aralioides HOM05D004135 ORTHO05D005558 1.7e-120 436.4 290 74.8
Carub.0004s1652 Capsella rubella HOM05D004135 ORTHO05D005558 2.3e-120 436.0 295 73.2
AUR62027344 Chenopodium quinoa HOM05D004135 ORTHO05D005558 2.3e-120 436.0 290 74.5
Nn7g38349 Nelumbo nucifera HOM05D004135 ORTHO05D005558 2.3e-120 436.0 293 75.8
Sp4g17120 Schrenkiella parvula HOM05D004135 ORTHO05D005558 2.3e-120 436.0 295 73.6
TWI38G0133 Tripterygium wilfordii HOM05D004135 ORTHO05D005558 2.3e-120 436.0 292 78.8
Sopen02g009560 Solanum pennellii HOM05D004135 ORTHO05D005558 2.9e-120 435.6 291 75.6
Sopen02g018720 Solanum pennellii HOM05D004135 ORTHO05D005558 2.9e-120 435.6 290 75.2
Lj1A1156T44 Lonicera japonica HOM05D004135 ORTHO05D005558 3.8e-120 435.3 307 73.0
MSTRG.16319 Avicennia marina HOM05D004135 ORTHO05D005558 5.0e-120 434.9 293 76.1
Sc24g0002580 Simmondsia chinensis HOM05D004135 ORTHO05D005558 5.0e-120 434.9 290 75.9
PGSC0003DMG400031401 Solanum tuberosum HOM05D004135 ORTHO05D005558 5.0e-120 434.9 291 75.6
Lj6g0020585 Lotus japonicus HOM05D004135 ORTHO05D005558 8.6e-120 434.1 290 74.8
arahy.Tifrunner.gnm1.ann1.CJHC7K Arachis hypogaea HOM05D004135 ORTHO05D005558 1.1e-119 433.7 294 75.2
Glyma.15G136100 Glycine max HOM05D004135 ORTHO05D005558 1.9e-119 433.0 287 74.6
Solyc02g030243.1 Solanum lycopersicum HOM05D004135 ORTHO05D005558 1.9e-119 433.0 291 75.3
CSS0034299 Camellia sinensis var. sinensis HOM05D004135 ORTHO05D005558 5.5e-119 431.4 310 73.9
Phvul.006G122500 Phaseolus vulgaris HOM05D004135 ORTHO05D005558 5.5e-119 431.4 287 74.6
EL10Ac8g19524 Beta vulgaris HOM05D004135 ORTHO05D005558 7.2e-119 431.0 290 74.8
TWI15G0841 Tripterygium wilfordii HOM05D004135 ORTHO05D005558 9.5e-119 430.6 292 78.1
AUR62042515 Chenopodium quinoa HOM05D004135 ORTHO05D005558 2.1e-118 429.5 290 73.1
Lj2A337T32 Lonicera japonica HOM05D004135 ORTHO05D005558 4.7e-118 428.3 287 75.3
PSO541G2415 Papaver somniferum HOM05D004135 ORTHO05D005558 4.7e-118 428.3 290 74.5
Lalb_Chr20g0120301 Lupinus albus HOM05D004135 ORTHO05D005558 8.0e-118 427.6 290 73.4
Glyma.09G030400 Glycine max HOM05D004135 ORTHO05D005558 3.0e-117 425.6 287 73.2
DCAR_007807 Daucus carota HOM05D004135 ORTHO05D005558 4.0e-117 425.2 293 74.7
ATR0763G246 Amborella trichopoda HOM05D004135 ORTHO05D005558 5.2e-117 424.9 290 72.8
PSO675G0864 Papaver somniferum HOM05D004135 ORTHO05D005558 6.8e-117 424.5 290 73.8
unitig_748.g7354 Utricularia gibba HOM05D004135 ORTHO05D005558 8.9e-117 424.1 294 73.1
Nn4g26687 Nelumbo nucifera HOM05D004135 ORTHO05D005558 2.0e-116 422.9 290 73.4
CDE02G1412 Ceratophyllum demersum HOM05D004135 ORTHO05D005558 4.4e-116 421.8 290 73.4
Lsat_1_v5_gn_7_31180 Lactuca sativa HOM05D004135 ORTHO05D005558 7.5e-116 421.0 292 74.3
SGA_v2.0_scaffold298G47640 Striga asiatica HOM05D004135 ORTHO05D005558 1.3e-115 420.2 328 68.9
TWI81G0788 Tripterygium wilfordii HOM05D004135 ORTHO05D005558 1.3e-115 420.2 290 73.1
Ah.11g045310 Amaranthus hybridus HOM05D004135 ORTHO05D005558 8.3e-115 417.5 290 71.7
Os04g0612600 Oryza sativa ssp. japonica HOM05D004135 ORTHO05D005558 1.4e-114 416.8 290 72.8
Zm00001eb430730 Zea mays HOM05D004135 ORTHO05D005558 2.4e-114 416.0 290 73.1
Aqoxy6G00202 Aquilegia oxysepala HOM05D004135 ORTHO05D005558 5.4e-114 414.8 290 71.7
ECA236G2122 Erigeron canadensis HOM05D000091 ORTHO05D001510 1.7e-112 409.8 275 74.2
HPP92_013200 Vanilla planifolia HOM05D004135 ORTHO05D005558 3.6e-110 402.1 291 70.1
MBI18_g26296_MAGBIO Magnolia biondii HOM05D004135 ORTHO05D005558 8.0e-110 401.0 310 67.7
vmacro03457 Vaccinium macrocarpon HOM05D004135 ORTHO05D005558 2.3e-109 399.4 306 67.6
Atru.chr6.3256 Acer truncatum HOM05D004135 ORTHO05D005558 2.0e-108 396.4 292 70.5
VMungo0540G1545 Vigna mungo HOM05D004135 ORTHO05D005558 4.4e-108 395.2 287 70.0
Psat1g164080 Pisum sativum HOM05D004135 ORTHO05D005558 1.2e-105 387.1 256 75.0
Haze_08569 Corylus avellana HOM05D004135 ORTHO05D005558 6.0e-105 384.8 310 66.8
Actinidia31378 Actinidia chinensis HOM05D004135 ORTHO05D005558 3.9e-104 382.1 261 75.1
TPR.G8030 Trifolium pratense HOM05D004135 ORTHO05D005558 6.6e-104 381.3 258 74.4
vmacro10993 Vaccinium macrocarpon HOM05D004135 ORTHO05D005558 1.6e-102 376.7 448 49.3
Actinidia32352 Actinidia chinensis HOM05D004135 ORTHO05D005558 2.3e-101 372.9 292 68.5
Oeu052702.4 Olea europaea HOM05D004135 ORTHO05D005558 1.2e-100 370.5 303 66.0
Zm00001eb432010 Zea mays HOM05D004135 ORTHO05D005558 2.6e-100 369.4 296 64.9
Pp3c6_18240 Physcomitrium patens HOM05D004135 ORTHO05D005558 1.1e-98 364.0 290 63.1
Os04g0644700 Oryza sativa ssp. japonica HOM05D004135 ORTHO05D005558 2.4e-98 362.8 296 64.9
Pp3c16_16890 Physcomitrium patens HOM05D004135 ORTHO05D005558 7.0e-98 361.3 290 62.8
Pp3c27_2170 Physcomitrium patens HOM05D004135 ORTHO05D005558 1.6e-97 360.1 290 62.4
Mapoly0002s0056 Marchantia polymorpha HOM05D004135 ORTHO05D005558 7.3e-95 351.3 288 59.4
Dinv04216 Davidia involucrata HOM05D004135 ORTHO05D005558 3.6e-94 349.0 232 75.0
arahy.Tifrunner.gnm1.ann1.NB4WMM Arachis hypogaea HOM05D004135 ORTHO05D005558 4.7e-94 348.6 232 75.4
AagrBONN_evm.TU.Sc2ySwM_117.3836 Anthoceros agrestis HOM05D004135 ORTHO05D005558 8.3e-91 337.8 295 62.0
Cc09_g07090 Coffea canephora HOM05D004135 ORTHO05D005558 2.4e-90 336.3 233 72.5
Rhsim02G0165800 Rhododendron simsii HOM05D004135 ORTHO05D005558 1.1e-85 320.9 298 60.7
SMO358G0532 Selaginella moellendorffii HOM05D004135 ORTHO05D005558 2.8e-78 296.2 286 55.6
Actinidia25200 Actinidia chinensis HOM05D004135 ORTHO05D005558 1.1e-77 294.3 204 73.0
COL.COLO4_26892 Corchorus olitorius HOM05D004135 ORTHO05D005558 7.1e-74 281.6 271 58.3
CBR_g34668 Chara braunii HOM05D004135 ORTHO05D005558 3.6e-70 269.2 290 49.7
Cre13.g592450 Chlamydomonas reinhardtii HOM05D004135 ORTHO05D005558 1.4e-69 267.3 288 49.3
PRCOL_00001868 Prasinoderma coloniale HOM05D004135 ORTHO05D005558 5.4e-66 255.4 286 49.3
MCO11G236 Micromonas commoda HOM05D004135 ORTHO05D005558 4.5e-60 235.7 282 44.3
Zm00001eb274480 Zea mays HOM05D004135 ORTHO05D005558 8.2e-54 214.9 154 67.5
Haze_05958 Corylus avellana HOM05D006556 ORTHO05D008146 1.8e-53 213.8 150 74.0
CDE06G2577 Ceratophyllum demersum HOM05D004135 ORTHO05D005558 1.3e-51 207.6 164 64.0
Thecc.06G007200 Theobroma cacao HOM05D004135 ORTHO05D005558 4.6e-49 199.1 113 85.0
COL.COLO4_29004 Corchorus olitorius HOM05D004135 ORTHO05D005558 7.2e-42 175.3 119 74.8
RcHm_v2.0_Chr6g0289631 Rosa chinensis HOM05D004135 ORTHO05D008146 6.1e-25 119.0 67 88.1
RcHm_v2.0_Chr6g0289621 Rosa chinensis HOM05D004135 ORTHO05D028393 7.4e-23 112.1 70 81.4
Zm00001eb180170 Zea mays HOM05D004135 ORTHO05D444922 2.4e-21 107.1 75 70.7
RcHm_v2.0_Chr0c29g0501101 Rosa chinensis HOM05D004135 ORTHO05D028393 2.2e-19 100.5 58 82.8
RcHm_v2.0_Chr1g0337861 Rosa chinensis HOM05D004135 ORTHO05D028393 2.2e-19 100.5 58 82.8
AUR62011277 Chenopodium quinoa HOM05D004135 ORTHO05D138132 1.1e-18 98.2 52 88.5
Zm00001eb135420 Zea mays HOM05D004135 ORTHO05D443401 1.5e-18 97.8 74 71.6
CSS0024113 Camellia sinensis var. sinensis HOM05D004135 ORTHO05D028393 2.5e-18 97.1 57 80.7
SGA_v2.0_scaffold147G36336 Striga asiatica HOM05D004135 ORTHO05D000001 2.5e-18 97.1 162 38.3
Zm00001eb194710 Zea mays HOM05D004186 ORTHO05D006965 4.2e-18 96.3 79 65.8
SGA_v2.0_scaffold147G36337 Striga asiatica HOM05D004135 ORTHO05D401852 1.6e-17 94.4 125 45.6
Zm00001eb059010 Zea mays HOM05D004186 ORTHO05D006965 2.7e-17 93.6 82 63.4
Zm00001eb388920 Zea mays HOM05D000787 ORTHO05D001019 2.3e-16 90.5 83 62.7
Zm00001eb347580 Zea mays HOM05D004186 ORTHO05D006965 8.8e-16 88.6 79 62.0
Zm00001eb297670 Zea mays HOM05D004958 ORTHO05D005983 1.6e-09 67.8 49 71.4
AUR62044460 Chenopodium quinoa HOM05D004135 ORTHO05D137931 7.5e-07 58.9 38 73.7
Zm00001eb373640 Zea mays HOM05D004135 ORTHO05D444823 3.7e-06 56.6 100 45.0


User provided reference genes

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