Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0018241 Rosa chinensis HOM05D004276 ORTHO05D005126 7.7e-45 183.3 86 100.0
RcHm_v2.0_Chr1g0326781 Rosa chinensis HOM05D004276 ORTHO05D005126 5.5e-35 150.6 74 94.6
Haze_15633 Corylus avellana HOM05D004276 ORTHO05D005126 1.4e-22 109.4 68 77.9
CiPaw.01G069700 Carya illinoinensis HOM05D004276 ORTHO05D005126 4.1e-22 107.8 77 71.4
Sabra14G0067200 Salix brachista HOM05D004276 ORTHO05D005126 5.3e-22 107.5 67 79.1
Zm00001eb376200 Zea mays HOM05D004276 ORTHO05D005126 5.3e-22 107.5 67 79.1
Zm00001eb376270 Zea mays HOM05D004276 ORTHO05D005126 5.3e-22 107.5 67 79.1
Os06g0158600 Oryza sativa ssp. japonica HOM05D004276 ORTHO05D005126 7.0e-22 107.1 77 72.7
Zm00001eb376230 Zea mays HOM05D004276 ORTHO05D005126 7.0e-22 107.1 77 72.7
Zm00001eb376300 Zea mays HOM05D004276 ORTHO05D005126 7.0e-22 107.1 77 72.7
Zm00001eb376330 Zea mays HOM05D004276 ORTHO05D005126 7.0e-22 107.1 77 72.7
Duzib133G1515 Durio zibethinus HOM05D004276 ORTHO05D005126 9.1e-22 106.7 77 72.7
Duzib138G1911 Durio zibethinus HOM05D004276 ORTHO05D005126 9.1e-22 106.7 77 72.7
Potri.002G166200 Populus trichocarpa HOM05D004276 ORTHO05D005126 9.1e-22 106.7 77 72.7
Potri.014G092600 Populus trichocarpa HOM05D004276 ORTHO05D005126 9.1e-22 106.7 77 72.7
Thecc.01G349900 Theobroma cacao HOM05D004276 ORTHO05D005126 9.1e-22 106.7 77 72.7
Cfa003820 Carpinus fangiana HOM05D004276 ORTHO05D005126 1.2e-21 106.3 77 71.4
Glyma.12G191100 Glycine max HOM05D004276 ORTHO05D005126 1.2e-21 106.3 66 80.3
Glyma.13G310600 Glycine max HOM05D004276 ORTHO05D005126 1.2e-21 106.3 66 80.3
HanXRQChr17g0562231 Helianthus annuus HOM05D004276 ORTHO05D005126 1.2e-21 106.3 77 72.7
Lsat_1_v5_gn_4_34121 Lactuca sativa HOM05D004276 ORTHO05D005126 1.2e-21 106.3 77 72.7
Lj1g0009566 Lotus japonicus HOM05D004276 ORTHO05D005126 1.2e-21 106.3 66 80.3
Lj3g0009308 Lotus japonicus HOM05D004276 ORTHO05D005126 1.2e-21 106.3 66 80.3
VMungo1080G0287 Vigna mungo HOM05D004276 ORTHO05D005126 1.2e-21 106.3 66 80.3
Prupe.2G181300 Prunus persica HOM05D004276 ORTHO05D005126 1.6e-21 105.9 76 73.7
Actinidia10089 Actinidia chinensis HOM05D004276 ORTHO05D005126 2.0e-21 105.5 65 81.5
ATR0580G146 Amborella trichopoda HOM05D000306 ORTHO05D005993 2.0e-21 105.5 76 73.7
MSTRG.17308 Avicennia marina HOM05D004276 ORTHO05D005126 2.0e-21 105.5 76 73.7
EL10Ac1g00335 Beta vulgaris HOM05D004276 ORTHO05D005126 2.0e-21 105.5 76 73.7
CSS0045220 Camellia sinensis var. sinensis HOM05D004276 ORTHO05D005126 2.0e-21 105.5 76 73.7
Ca_09481_v3 Cicer arietinum L. HOM05D004276 ORTHO05D005126 2.0e-21 105.5 76 73.7
Ca_25855_v3 Cicer arietinum L. HOM05D004276 ORTHO05D005126 2.0e-21 105.5 76 73.7
DCAR_017055 Daucus carota HOM05D004276 ORTHO05D005126 2.0e-21 105.5 76 73.7
Dinv32536 Davidia involucrata HOM05D004276 ORTHO05D005126 2.0e-21 105.5 76 73.7
ECA234G2670 Erigeron canadensis HOM05D004276 ORTHO05D005126 2.0e-21 105.5 77 71.4
FvH4_7g15670 Fragaria vesca HOM05D004276 ORTHO05D005126 2.0e-21 105.5 76 73.7
FAN01G1870 Fragaria x ananassa HOM05D004276 ORTHO05D005126 2.0e-21 105.5 76 73.7
FAN10G0892 Fragaria x ananassa HOM05D004276 ORTHO05D005126 2.0e-21 105.5 76 73.7
FAN10G4166 Fragaria x ananassa HOM05D004276 ORTHO05D005126 2.0e-21 105.5 76 73.7
Nn5g30298 Nelumbo nucifera HOM05D004276 ORTHO05D005126 2.0e-21 105.5 76 73.7
Nitab4.5_0000305g0280 Nicotiana tabacum HOM05D004276 ORTHO05D005126 2.0e-21 105.5 76 73.7
Peaxi162Scf01254g00021 Petunia axillaris HOM05D004276 ORTHO05D005126 2.0e-21 105.5 76 73.7
Pp3c7_15560 Physcomitrium patens HOM05D004276 ORTHO05D005126 2.0e-21 105.5 65 81.5
RcHm_v2.0_Chr1g0358391 Rosa chinensis HOM05D004276 ORTHO05D005126 2.0e-21 105.5 76 73.7
Hund16683 Selenicereus undatus HOM05D004276 ORTHO05D005126 2.0e-21 105.5 76 73.7
Sc23g0002430 Simmondsia chinensis HOM05D004276 ORTHO05D005126 2.0e-21 105.5 76 73.7
TWI59G1141 Tripterygium wilfordii HOM05D004276 ORTHO05D005126 2.0e-21 105.5 65 81.5
unitig_736.g22824 Utricularia gibba HOM05D004276 ORTHO05D005126 2.0e-21 105.5 76 73.7
GSVIVG01026915001 Vitis vinifera HOM05D004276 ORTHO05D005126 2.0e-21 105.5 76 73.7
GSVIVG01027024001 Vitis vinifera HOM05D004276 ORTHO05D005126 2.0e-21 105.5 76 73.7
Gohir.A11G093300 Gossypium hirsutum HOM05D004276 ORTHO05D005126 2.7e-21 105.1 75 74.7
Gohir.D11G098300 Gossypium hirsutum HOM05D004276 ORTHO05D005126 2.7e-21 105.1 75 74.7
Gorai.007G104500 Gossypium raimondii HOM05D004276 ORTHO05D005126 2.7e-21 105.1 75 74.7
Phvul.005G117100 Phaseolus vulgaris HOM05D004276 ORTHO05D005126 2.7e-21 105.1 76 72.4
SEGI_17768 Sequoiadendron giganteum HOM05D004276 ORTHO05D005126 2.7e-21 105.1 76 73.7
Atru.chr5.606 Acer truncatum HOM05D004276 ORTHO05D005126 3.5e-21 104.8 75 74.7
Actinidia20176 Actinidia chinensis HOM05D004276 ORTHO05D005126 3.5e-21 104.8 75 74.7
AUR62004429 Chenopodium quinoa HOM05D004276 ORTHO05D005126 3.5e-21 104.8 76 72.4
AUR62022636 Chenopodium quinoa HOM05D004276 ORTHO05D005126 3.5e-21 104.8 76 72.4
Ciclev10022345m.g Citrus clementina HOM05D004276 ORTHO05D005126 3.5e-21 104.8 75 74.7
Lj9C594T5 Lonicera japonica HOM05D004276 ORTHO05D005126 3.5e-21 104.8 75 74.7
MBI06_g29321_MAGBIO Magnolia biondii HOM05D004276 ORTHO05D005126 3.5e-21 104.8 75 74.7
MD01G1073500 Malus domestica HOM05D004276 ORTHO05D005126 3.5e-21 104.8 75 74.7
Manes.11G086700 Manihot esculenta HOM05D004276 ORTHO05D005126 3.5e-21 104.8 76 72.4
Psat3g005280 Pisum sativum HOM05D004276 ORTHO05D005126 3.5e-21 104.8 75 74.7
TAR374G1118 Trochodendron aralioides HOM05D004276 ORTHO05D005126 3.5e-21 104.8 75 74.7
TAR375G0154 Trochodendron aralioides HOM05D004276 ORTHO05D005126 3.5e-21 104.8 75 74.7
CAN.G1143.25 Capsicum annuum HOM05D004276 ORTHO05D005126 4.5e-21 104.4 76 73.7
ClCG10G016120 Citrullus lanatus HOM05D004276 ORTHO05D005126 4.5e-21 104.4 76 72.4
COL.COLO4_06361 Corchorus olitorius HOM05D004276 ORTHO05D005126 4.5e-21 104.4 77 71.4
CsaV3_3G040290 Cucumis sativus L. HOM05D004276 ORTHO05D005126 4.5e-21 104.4 76 72.4
Pp3c11_12810 Physcomitrium patens HOM05D004276 ORTHO05D005126 4.5e-21 104.4 59 84.7
QL04p058903 Quercus lobata HOM05D004276 ORTHO05D005126 4.5e-21 104.4 77 71.4
QL06p021685 Quercus lobata HOM05D004276 ORTHO05D005126 4.5e-21 104.4 77 71.4
Rhsim01G0168500 Rhododendron simsii HOM05D004276 ORTHO05D005126 4.5e-21 104.4 75 74.7
Rhsim11G0144600 Rhododendron simsii HOM05D004276 ORTHO05D005126 4.5e-21 104.4 75 74.7
TWI14G0490 Tripterygium wilfordii HOM05D004276 ORTHO05D005126 4.5e-21 104.4 75 74.7
Aqoxy7G00185 Aquilegia oxysepala HOM05D004276 ORTHO05D005126 5.9e-21 104.0 69 76.8
CDE05G0403 Ceratophyllum demersum HOM05D004276 ORTHO05D005126 5.9e-21 104.0 76 72.4
CDE11G0794 Ceratophyllum demersum HOM05D004276 ORTHO05D005126 5.9e-21 104.0 76 72.4
Lalb_Chr04g0261801 Lupinus albus HOM05D004276 ORTHO05D005126 5.9e-21 104.0 76 72.4
PSO135G0697 Papaver somniferum HOM05D004276 ORTHO05D005126 5.9e-21 104.0 69 76.8
PSO210G0614 Papaver somniferum HOM05D004276 ORTHO05D005126 5.9e-21 104.0 69 76.8
PSO302G0143 Papaver somniferum HOM05D004276 ORTHO05D005126 5.9e-21 104.0 69 76.8
PSO384G3706 Papaver somniferum HOM05D004276 ORTHO05D005126 5.9e-21 104.0 69 76.8
Solyc03g121130.3 Solanum lycopersicum HOM05D004276 ORTHO05D005126 5.9e-21 104.0 76 73.7
Sopen03g039960 Solanum pennellii HOM05D004276 ORTHO05D005126 5.9e-21 104.0 76 73.7
PGSC0003DMG402002606 Solanum tuberosum HOM05D004276 ORTHO05D005126 5.9e-21 104.0 76 73.7
Cpa.g.sc184.11 Carica papaya HOM05D004276 ORTHO05D005126 7.7e-21 103.6 69 76.8
MELO3C009766.2 Cucumis melo HOM05D004276 ORTHO05D005126 7.7e-21 103.6 75 73.3
Migut.B01814 Erythranthe guttata HOM05D004276 ORTHO05D005126 7.7e-21 103.6 75 73.3
Migut.N01579 Erythranthe guttata HOM05D004276 ORTHO05D005126 7.7e-21 103.6 75 73.3
Sed0018576 Sechium edule HOM05D004276 ORTHO05D005126 7.7e-21 103.6 75 73.3
Medtr7g116720 Medicago truncatula HOM05D004276 ORTHO05D005126 1.0e-20 103.2 76 72.4
TPR.G4704 Trifolium pratense HOM05D004276 ORTHO05D005126 1.0e-20 103.2 76 72.4
arahy.Tifrunner.gnm1.ann1.BP50A3 Arachis hypogaea HOM05D004276 ORTHO05D005126 1.3e-20 102.8 66 75.8
CANSAT78G1628 Cannabis sativa HOM05D004276 ORTHO05D005126 1.3e-20 102.8 76 71.1
Mapoly0007s0029 Marchantia polymorpha HOM05D004276 ORTHO05D005126 1.3e-20 102.8 76 69.7
SalBow1G3478 Salvia bowleyana HOM05D004276 ORTHO05D005126 2.2e-20 102.1 64 75.0
THA.LOC104802050 Tarenaya hassleriana HOM05D004276 ORTHO05D005126 2.2e-20 102.1 77 70.1
HPP92_002892 Vanilla planifolia HOM05D004276 ORTHO05D005126 2.2e-20 102.1 69 75.4
Aa31LG1G27620 Aethionema arabicum HOM05D004276 ORTHO05D005126 2.9e-20 101.7 77 71.4
AL1G39200 Arabidopsis lyrata HOM05D004276 ORTHO05D005126 2.9e-20 101.7 77 70.1
Cc02_g38790 Coffea canephora HOM05D004276 ORTHO05D005126 2.9e-20 101.7 75 70.7
Eucgr.E00082 Eucalyptus grandis HOM05D004276 ORTHO05D005126 2.9e-20 101.7 69 75.4
PGR031G2222 Punica granatum HOM05D004276 ORTHO05D005126 2.9e-20 101.7 76 71.1
arahy.Tifrunner.gnm1.ann1.X3APAR Arachis hypogaea HOM05D004276 ORTHO05D005126 3.8e-20 101.3 66 74.2
CBR_g20329 Chara braunii HOM05D004276 ORTHO05D005126 3.8e-20 101.3 76 71.1
Medtr6g086290 Medicago truncatula HOM05D004276 ORTHO05D005126 3.8e-20 101.3 76 69.7
HPP92_002823 Vanilla planifolia HOM05D004276 ORTHO05D005126 3.8e-20 101.3 69 75.4
HPP92_002881 Vanilla planifolia HOM05D004276 ORTHO05D005126 3.8e-20 101.3 69 75.4
SMO117G0002 Selaginella moellendorffii HOM05D004276 ORTHO05D005126 5.0e-20 100.9 76 69.7
AL4G45500 Arabidopsis lyrata HOM05D004276 ORTHO05D005126 6.5e-20 100.5 77 68.8
AT2G46230 Arabidopsis thaliana HOM05D004276 ORTHO05D005126 6.5e-20 100.5 77 68.8
arahy.Tifrunner.gnm1.ann1.K2BJ17 Arachis hypogaea HOM05D004276 ORTHO05D005126 6.5e-20 100.5 66 74.2
FAN06G0043 Fragaria x ananassa HOM05D004276 ORTHO05D005126 6.5e-20 100.5 78 71.8
FAN06G3034 Fragaria x ananassa HOM05D004276 ORTHO05D005126 6.5e-20 100.5 78 71.8
Oeu004920.1 Olea europaea HOM05D004276 ORTHO05D005126 6.5e-20 100.5 75 72.0
Oeu048599.1 Olea europaea HOM05D004276 ORTHO05D005126 6.5e-20 100.5 75 72.0
Carub.0004s2893 Capsella rubella HOM05D004276 ORTHO05D005126 8.5e-20 100.1 77 68.8
CARHR025440 Cardamine hirsuta HOM05D004276 ORTHO05D005126 1.1e-19 99.8 77 68.8
Gohir.A06G141040 Gossypium hirsutum HOM05D004276 ORTHO05D005126 1.1e-19 99.8 65 81.5
arahy.Tifrunner.gnm1.ann1.4FI6MM Arachis hypogaea HOM05D004276 ORTHO05D005126 3.2e-19 98.2 66 72.7
Thhalv10001643m.g Eutrema salsugineum HOM05D004276 ORTHO05D005126 4.2e-19 97.8 77 67.5
Sp4g28280 Schrenkiella parvula HOM05D004276 ORTHO05D005126 9.4e-19 96.7 77 67.5
MCO11G412 Micromonas commoda HOM05D004276 ORTHO05D005126 3.6e-18 94.7 69 68.1
SalBow3G3563 Salvia bowleyana HOM05D004276 ORTHO05D005126 6.1e-18 94.0 114 49.1
BcaC02g07027 Brassica carinata HOM05D004276 ORTHO05D005126 1.4e-17 92.8 77 64.9
BcaC02g12509 Brassica carinata HOM05D004276 ORTHO05D005126 1.4e-17 92.8 77 64.9
A04p34320 Brassica napus HOM05D004276 ORTHO05D005126 1.4e-17 92.8 77 64.9
A05p01570 Brassica napus HOM05D004276 ORTHO05D005126 1.4e-17 92.8 77 64.9
C04p01790 Brassica napus HOM05D004276 ORTHO05D005126 1.4e-17 92.8 77 64.9
C04p72140 Brassica napus HOM05D004276 ORTHO05D005126 1.4e-17 92.8 77 64.9
BraA04t18893Z Brassica rapa HOM05D004276 ORTHO05D005126 1.4e-17 92.8 77 64.9
BraA05t19152Z Brassica rapa HOM05D004276 ORTHO05D005126 1.4e-17 92.8 77 64.9
Cre16.g679450 Chlamydomonas reinhardtii HOM05D004276 ORTHO05D005126 3.0e-17 91.7 66 66.7
BcaB06g29435 Brassica carinata HOM05D004276 ORTHO05D005126 8.8e-17 90.1 77 63.6
BcaC02g12702 Brassica carinata HOM05D004276 ORTHO05D005126 8.8e-17 90.1 77 63.6
Haze_27571 Corylus avellana HOM05D004276 ORTHO05D005126 1.3e-15 86.3 66 59.1
Lsat_1_v5_gn_2_67120 Lactuca sativa HOM05D004276 ORTHO05D005126 1.3e-15 86.3 55 76.4
Ah.05g180030 Amaranthus hybridus HOM05D004276 ORTHO05D005126 8.3e-15 83.6 110 48.2
Sabra02G0145400 Salix brachista HOM05D004276 ORTHO05D005126 3.1e-14 81.6 90 54.4
PRCOL_00001531 Prasinoderma coloniale HOM05D004276 ORTHO05D005126 4.5e-13 77.8 69 59.4
SGA_v2.0_scaffold95G28798 Striga asiatica HOM05D004276 ORTHO05D005126 2.1e-10 68.9 50 70.0
QL08p061068 Quercus lobata HOM05D004276 ORTHO05D013412 6.1e-10 67.4 46 71.7
AagrBONN_evm.TU.Sc2ySwM_368.2613 Anthoceros agrestis HOM05D004276 ORTHO05D005126 5.2e-09 64.3 49 69.4
RcHm_v2.0_Chr3g0464711 Rosa chinensis HOM05D004276 ORTHO05D005126 1.5e-08 62.8 37 75.7
MBI07_g03903_MAGBIO Magnolia biondii HOM05D004276 ORTHO05D005126 3.4e-08 61.6 49 67.3
Glyma.03G254200 Glycine max HOM05D004276 ORTHO05D005126 1.8e-06 55.8 33 81.8
AT1G26530 Arabidopsis thaliana HOM05D004276 ORTHO05D005126 4.1e-06 54.7 36 72.2
ATR0585G106 Amborella trichopoda HOM05D004276 ORTHO05D005126 9.2e-06 53.5 42 69.0


User provided reference genes

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