Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0016621 Rosa chinensis HOM05D004510 ORTHO05D005302 7.5e-38 159.8 71 100.0
FvH4_3g24980 Fragaria vesca HOM05D004510 ORTHO05D005302 6.1e-32 140.2 66 95.5
FAN11G3425 Fragaria x ananassa HOM05D004510 ORTHO05D005302 6.1e-32 140.2 66 95.5
FAN16G1814 Fragaria x ananassa HOM05D004510 ORTHO05D005302 6.1e-32 140.2 66 95.5
FAN21G2427 Fragaria x ananassa HOM05D004510 ORTHO05D005302 6.1e-32 140.2 66 95.5
FAN25G2046 Fragaria x ananassa HOM05D004510 ORTHO05D005302 6.1e-32 140.2 66 95.5
RcHm_v2.0_Chr5g0044841 Rosa chinensis HOM05D004510 ORTHO05D005302 1.4e-31 139.0 66 93.9
RcHm_v2.0_Chr5g0044481 Rosa chinensis HOM05D004510 ORTHO05D005302 2.3e-31 138.3 65 95.4
MD03G1145900 Malus domestica HOM05D004510 ORTHO05D005302 2.0e-30 135.2 66 92.4
MD11G1164800 Malus domestica HOM05D004510 ORTHO05D005302 2.0e-30 135.2 66 92.4
Prupe.6G130700 Prunus persica HOM05D004510 ORTHO05D005302 4.4e-30 134.0 66 90.9
RcHm_v2.0_Chr1g0324351 Rosa chinensis HOM05D004510 ORTHO05D005302 7.5e-30 133.3 66 90.9
Manes.11G162300 Manihot esculenta HOM05D004510 ORTHO05D005302 1.6e-27 125.6 66 81.8
vmacro03323 Vaccinium macrocarpon HOM05D004510 ORTHO05D005302 2.7e-27 124.8 69 78.3
HPP92_011904 Vanilla planifolia HOM05D004510 ORTHO05D005302 6.0e-27 123.6 66 81.8
Aqoxy4G02763 Aquilegia oxysepala HOM05D004510 ORTHO05D005302 1.3e-26 122.5 66 81.8
ClCG01G011910 Citrullus lanatus HOM05D004510 ORTHO05D005302 1.3e-26 122.5 66 81.8
Dinv42548 Davidia involucrata HOM05D004510 ORTHO05D005302 1.3e-26 122.5 66 80.3
Hund18760 Selenicereus undatus HOM05D004510 ORTHO05D005302 1.3e-26 122.5 66 81.8
Actinidia24221 Actinidia chinensis HOM05D004510 ORTHO05D005302 1.7e-26 122.1 66 80.3
AUR62036195 Chenopodium quinoa HOM05D004510 ORTHO05D005302 1.7e-26 122.1 66 80.3
PSO339G0142 Papaver somniferum HOM05D004510 ORTHO05D005302 1.7e-26 122.1 66 80.3
PSO384G2406 Papaver somniferum HOM05D004510 ORTHO05D005302 1.7e-26 122.1 66 80.3
Potri.004G201800 Populus trichocarpa HOM05D004510 ORTHO05D005302 1.7e-26 122.1 66 78.8
Potri.009G163300 Populus trichocarpa HOM05D004510 ORTHO05D005302 1.7e-26 122.1 66 78.8
Sabra04G0136400 Salix brachista HOM05D004510 ORTHO05D005302 1.7e-26 122.1 66 78.8
Sabra09G0127400 Salix brachista HOM05D004510 ORTHO05D005302 1.7e-26 122.1 66 78.8
AUR62009750 Chenopodium quinoa HOM05D004510 ORTHO05D005302 3.0e-26 121.3 66 78.8
Dinv22838 Davidia involucrata HOM05D004510 ORTHO05D005302 3.9e-26 120.9 66 80.3
Hma1.2p1_0587F.1_g184290 Hydrangea macrophylla HOM05D004510 ORTHO05D005302 3.9e-26 120.9 66 78.8
TAR623G1468 Trochodendron aralioides HOM05D004510 ORTHO05D005302 3.9e-26 120.9 66 80.3
EL10Ac7g15829 Beta vulgaris HOM05D004510 ORTHO05D005302 5.0e-26 120.6 66 78.8
CSS0020343 Camellia sinensis var. sinensis HOM05D004510 ORTHO05D005302 5.0e-26 120.6 66 78.8
CiPaw.13G135100 Carya illinoinensis HOM05D004510 ORTHO05D005302 5.0e-26 120.6 66 80.3
Ciclev10027862m.g Citrus clementina HOM05D004510 ORTHO05D005302 5.0e-26 120.6 66 78.8
PGR102G0622 Punica granatum HOM05D004510 ORTHO05D005302 5.0e-26 120.6 66 78.8
QL01p012154 Quercus lobata HOM05D004510 ORTHO05D005302 5.0e-26 120.6 66 80.3
Gohir.A08G005400 Gossypium hirsutum HOM05D004510 ORTHO05D005302 6.6e-26 120.2 66 80.3
Gohir.D08G015800 Gossypium hirsutum HOM05D004510 ORTHO05D005302 6.6e-26 120.2 66 80.3
Gorai.004G010100 Gossypium raimondii HOM05D004510 ORTHO05D005302 6.6e-26 120.2 66 80.3
TWI31G0469 Tripterygium wilfordii HOM05D004510 ORTHO05D005302 6.6e-26 120.2 66 80.3
ATR0776G017 Amborella trichopoda HOM05D004510 ORTHO05D005302 8.6e-26 119.8 66 77.3
CANSAT54G0764 Cannabis sativa HOM05D004510 ORTHO05D005302 8.6e-26 119.8 66 77.3
arahy.Tifrunner.gnm1.ann1.CJK6JS Arachis hypogaea HOM05D004510 ORTHO05D005302 1.1e-25 119.4 66 80.3
arahy.Tifrunner.gnm1.ann1.G66SVD Arachis hypogaea HOM05D004510 ORTHO05D005302 1.1e-25 119.4 66 80.3
Haze_23369 Corylus avellana HOM05D004510 ORTHO05D005302 1.1e-25 119.4 66 78.8
MELO3C004700.2 Cucumis melo HOM05D004510 ORTHO05D005302 1.1e-25 119.4 66 80.3
CsaV3_1G014870 Cucumis sativus L. HOM05D004510 ORTHO05D005302 1.1e-25 119.4 66 80.3
Glyma.12G089700 Glycine max HOM05D004510 ORTHO05D005302 1.1e-25 119.4 66 80.3
Oeu035565.1 Olea europaea HOM05D004510 ORTHO05D005302 1.1e-25 119.4 66 78.8
Sed0027037 Sechium edule HOM05D004510 ORTHO05D005302 1.1e-25 119.4 66 80.3
COL.COLO4_19854 Corchorus olitorius HOM05D004510 ORTHO05D005302 1.5e-25 119.0 66 78.8
Duzib150G0176 Durio zibethinus HOM05D004510 ORTHO05D005302 1.5e-25 119.0 66 78.8
Lj3g0009034 Lotus japonicus HOM05D004510 ORTHO05D005302 1.5e-25 119.0 66 80.3
Rhsim13G0112600 Rhododendron simsii HOM05D004510 ORTHO05D005302 1.5e-25 119.0 58 87.9
Thecc.09G282400 Theobroma cacao HOM05D004510 ORTHO05D005302 1.5e-25 119.0 66 78.8
GSVIVG01036116001 Vitis vinifera HOM05D004510 ORTHO05D005302 1.5e-25 119.0 66 77.3
Ca_19411_v3 Cicer arietinum L. HOM05D004510 ORTHO05D005302 1.9e-25 118.6 66 78.8
HanXRQChr16g0526961 Helianthus annuus HOM05D004510 ORTHO05D005302 1.9e-25 118.6 66 77.3
Lj1C236G5 Lonicera japonica HOM05D004510 ORTHO05D005302 1.9e-25 118.6 66 77.3
Lalb_Chr03g0028121 Lupinus albus HOM05D004510 ORTHO05D005302 1.9e-25 118.6 66 78.8
Lalb_Chr19g0136431 Lupinus albus HOM05D004510 ORTHO05D005302 1.9e-25 118.6 66 78.8
Phvul.011G094800 Phaseolus vulgaris HOM05D004510 ORTHO05D005302 1.9e-25 118.6 66 78.8
Psat7g187800 Pisum sativum HOM05D004510 ORTHO05D005302 1.9e-25 118.6 66 78.8
VMungo1127G0197 Vigna mungo HOM05D004510 ORTHO05D005302 1.9e-25 118.6 66 78.8
DCAR_010345 Daucus carota HOM05D004510 ORTHO05D005302 2.5e-25 118.2 66 77.3
THA.LOC104826427 Tarenaya hassleriana HOM05D004510 ORTHO05D005302 2.5e-25 118.2 66 77.3
Atru.chr3.3236 Acer truncatum HOM05D004510 ORTHO05D005302 3.3e-25 117.9 66 77.3
SEGI_33849 Sequoiadendron giganteum HOM05D004510 ORTHO05D005302 3.3e-25 117.9 66 75.8
Sc21g0007070 Simmondsia chinensis HOM05D004510 ORTHO05D005302 3.3e-25 117.9 66 78.8
Ah.08g215670 Amaranthus hybridus HOM05D004510 ORTHO05D005302 4.3e-25 117.5 66 77.3
Glyma.11G182800 Glycine max HOM05D004510 ORTHO05D005302 4.3e-25 117.5 66 78.8
Nitab4.5_0012235g0010 Nicotiana tabacum HOM05D004510 ORTHO05D005302 4.3e-25 117.5 66 78.8
TPR.G17233 Trifolium pratense HOM05D004510 ORTHO05D005302 4.3e-25 117.5 66 77.3
Gorai.007G089400 Gossypium raimondii HOM05D004510 ORTHO05D005302 5.6e-25 117.1 58 86.2
SGA_v2.0_scaffold295G47522 Striga asiatica HOM05D004510 ORTHO05D005302 5.6e-25 117.1 66 77.3
unitig_8.g2975 Utricularia gibba HOM05D001558 ORTHO05D005302 5.6e-25 117.1 66 75.8
Cc01_g09050 Coffea canephora HOM05D004510 ORTHO05D005302 7.3e-25 116.7 66 77.3
Eucgr.B03845 Eucalyptus grandis HOM05D004510 ORTHO05D005302 7.3e-25 116.7 66 77.3
Medtr4g052930 Medicago truncatula HOM05D004510 ORTHO05D005302 7.3e-25 116.7 66 77.3
HanXRQChr13g0397471 Helianthus annuus HOM05D004510 ORTHO05D005302 9.5e-25 116.3 66 75.8
Solyc11g068500.2 Solanum lycopersicum HOM05D004510 ORTHO05D005302 9.5e-25 116.3 66 77.3
PGSC0003DMG400026338 Solanum tuberosum HOM05D004510 ORTHO05D005302 9.5e-25 116.3 66 77.3
CAN.G1524.4 Capsicum annuum HOM05D004510 ORTHO05D005302 1.2e-24 115.9 66 77.3
Sopen11g027210 Solanum pennellii HOM05D004510 ORTHO05D005302 1.2e-24 115.9 66 77.3
Zm00001eb348320 Zea mays HOM05D004510 ORTHO05D005302 1.2e-24 115.9 66 75.8
Aa31LG5G8800 Aethionema arabicum HOM05D004510 ORTHO05D005302 1.6e-24 115.5 64 75.0
CDE06G1114 Ceratophyllum demersum HOM05D004510 ORTHO05D005302 1.6e-24 115.5 66 77.3
ECA233G5657 Erigeron canadensis HOM05D004510 ORTHO05D005302 2.1e-24 115.2 66 74.2
Migut.N02488 Erythranthe guttata HOM05D004510 ORTHO05D005302 2.1e-24 115.2 58 84.5
Nitab4.5_0000755g0090 Nicotiana tabacum HOM05D004510 ORTHO05D005302 2.8e-24 114.8 64 78.1
Zm00001eb288910 Zea mays HOM05D004510 ORTHO05D005302 2.8e-24 114.8 66 74.2
Cpa.g.sc32.21 Carica papaya HOM05D004510 ORTHO05D005302 3.6e-24 114.4 66 75.8
Nn6g34880 Nelumbo nucifera HOM05D004510 ORTHO05D005302 6.2e-24 113.6 73 71.2
A04p20970 Brassica napus HOM05D004510 ORTHO05D005302 8.0e-24 113.2 64 76.6
BraA04t17666Z Brassica rapa HOM05D004510 ORTHO05D005302 8.0e-24 113.2 64 76.6
Cpa.g.sc3326.1 Carica papaya HOM05D004510 ORTHO05D005302 8.0e-24 113.2 64 76.6
Lsat_1_v5_gn_6_38881 Lactuca sativa HOM05D004510 ORTHO05D005302 8.0e-24 113.2 66 71.2
SGA_v2.0_scaffold177G39411 Striga asiatica HOM05D004510 ORTHO05D005302 8.0e-24 113.2 67 73.1
AT2G27460 Arabidopsis thaliana HOM05D004510 ORTHO05D005302 1.1e-23 112.8 64 75.0
Os05g0443300 Oryza sativa ssp. japonica HOM05D004510 ORTHO05D005302 1.1e-23 112.8 66 72.7
Peaxi162Scf00040g00020 Petunia axillaris HOM05D004510 ORTHO05D005302 1.1e-23 112.8 66 75.8
CDE08G1408 Ceratophyllum demersum HOM05D004510 ORTHO05D005302 1.4e-23 112.5 64 75.0
THA.LOC104815723 Tarenaya hassleriana HOM05D004510 ORTHO05D005302 1.4e-23 112.5 64 75.0
AL4G21450 Arabidopsis lyrata HOM05D004510 ORTHO05D005302 1.8e-23 112.1 64 73.4
C04p56760 Brassica napus HOM05D004510 ORTHO05D005302 1.8e-23 112.1 64 75.0
BolC4t27208H Brassica oleracea HOM05D004510 ORTHO05D005302 1.8e-23 112.1 64 75.0
Gohir.D05G083300 Gossypium hirsutum HOM05D004510 ORTHO05D005302 1.8e-23 112.1 66 74.2
Gohir.D11G227001 Gossypium hirsutum HOM05D004510 ORTHO05D005302 1.8e-23 112.1 56 83.9
Carub.0004s0808 Capsella rubella HOM05D004510 ORTHO05D005302 2.3e-23 111.7 64 73.4
CARHR120110 Cardamine hirsuta HOM05D004510 ORTHO05D005302 2.3e-23 111.7 64 73.4
Thhalv10016271m.g Eutrema salsugineum HOM05D004510 ORTHO05D005302 2.3e-23 111.7 64 75.0
SHI33806 Sapria himalayana HOM05D000105 ORTHO05D000023 2.3e-23 111.7 68 73.5
RcHm_v2.0_Chr5g0040971 Rosa chinensis HOM05D004510 ORTHO05D005302 3.1e-23 111.3 49 98.0
SalBow3G0413 Salvia bowleyana HOM05D004510 ORTHO05D005302 3.1e-23 111.3 66 72.7
Os04g0412900 Oryza sativa ssp. japonica HOM05D004510 ORTHO05D005302 4.0e-23 110.9 66 72.7
Sp4g10250 Schrenkiella parvula HOM05D004510 ORTHO05D005302 5.2e-23 110.5 64 73.4
BcaC02g10877 Brassica carinata HOM05D004510 ORTHO05D005302 8.9e-23 109.8 64 71.9
A07p18220 Brassica napus HOM05D004510 ORTHO05D005302 8.9e-23 109.8 64 71.9
C04p24140 Brassica napus HOM05D004510 ORTHO05D005302 8.9e-23 109.8 64 71.9
BolC4t23911H Brassica oleracea HOM05D004510 ORTHO05D005302 8.9e-23 109.8 64 71.9
BraA07t29538Z Brassica rapa HOM05D004510 ORTHO05D005302 8.9e-23 109.8 64 71.9
Zm00001eb421940 Zea mays HOM05D004510 ORTHO05D005302 1.2e-22 109.4 66 71.2
BcaB02g10090 Brassica carinata HOM05D004510 ORTHO05D005302 2.0e-22 108.6 64 70.3
Gohir.A05G080300 Gossypium hirsutum HOM05D004510 ORTHO05D005302 2.0e-22 108.6 51 90.2
Gohir.D06G076550 Gossypium hirsutum HOM05D004510 ORTHO05D005302 3.4e-22 107.8 58 82.8
Mapoly0020s0029 Marchantia polymorpha HOM05D004510 ORTHO05D005302 4.9e-21 104.0 66 66.7
Pp3c9_6480 Physcomitrium patens HOM05D004510 ORTHO05D005302 4.9e-21 104.0 66 62.1
Pp3c9_12900 Physcomitrium patens HOM05D004510 ORTHO05D005302 5.4e-20 100.5 66 62.1
SMO119G0407 Selaginella moellendorffii HOM05D004510 ORTHO05D005302 7.0e-20 100.1 66 68.2
AagrBONN_evm.TU.Sc2ySwM_369.588 Anthoceros agrestis HOM05D004510 ORTHO05D005302 2.1e-19 98.6 66 62.1
Gohir.D06G132050 Gossypium hirsutum HOM05D004510 ORTHO05D005302 6.6e-18 93.6 47 87.2
Gorai.009G085000 Gossypium raimondii HOM05D004510 ORTHO05D005302 2.1e-16 88.6 61 65.6
CBR_g98 Chara braunii HOM05D004510 ORTHO05D005302 3.6e-16 87.8 66 59.1
Gohir.D11G083850 Gossypium hirsutum HOM05D004510 ORTHO05D005302 1.4e-15 85.9 44 86.4
PRCOL_00001783 Prasinoderma coloniale HOM05D004510 ORTHO05D005302 1.1e-07 59.7 60 41.7


User provided reference genes

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