Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0007801 Rosa chinensis HOM05D003743 ORTHO05D004311 0.0e+00 1196.8 658 100.0
FAN14G3620 Fragaria x ananassa HOM05D003743 ORTHO05D004311 0.0e+00 1138.6 658 94.8
FAN16G2290 Fragaria x ananassa HOM05D003743 ORTHO05D004311 0.0e+00 1134.0 658 94.4
FAN21G0113 Fragaria x ananassa HOM05D003743 ORTHO05D004311 0.0e+00 1133.2 658 94.2
FvH4_3g04783 Fragaria vesca HOM05D003743 ORTHO05D004311 0.0e+00 1127.9 658 93.9
FAN03G0627 Fragaria x ananassa HOM05D003743 ORTHO05D004311 0.0e+00 1100.1 658 92.4
Prupe.3G050300 Prunus persica HOM05D003743 ORTHO05D004311 9.6e-297 1023.1 659 85.0
MD10G1061800 Malus domestica HOM05D003743 ORTHO05D004311 7.1e-292 1006.9 660 85.0
FAN25G1603 Fragaria x ananassa HOM05D003743 ORTHO05D004311 4.6e-283 977.6 614 89.4
Manes.16G024900 Manihot esculenta HOM05D003743 ORTHO05D004311 1.0e-245 853.6 662 74.2
CsaV3_4G005020 Cucumis sativus L. HOM05D003743 ORTHO05D004311 1.1e-244 850.1 663 71.9
Potri.004G039500 Populus trichocarpa HOM05D003743 ORTHO05D004311 5.5e-244 847.8 664 73.3
CiPaw.10G046600 Carya illinoinensis HOM05D003743 ORTHO05D004311 2.1e-243 845.9 662 74.6
Cpa.g.sc27.76 Carica papaya HOM05D003743 ORTHO05D004311 2.2e-240 835.9 668 72.9
Glyma.07G194200 Glycine max HOM05D003743 ORTHO05D004311 2.4e-239 832.4 662 72.4
Glyma.13G182500 Glycine max HOM05D003743 ORTHO05D004311 2.4e-239 832.4 663 72.9
Thecc.06G191600 Theobroma cacao HOM05D003743 ORTHO05D004311 3.1e-239 832.0 666 72.4
Sed0012938 Sechium edule HOM05D003743 ORTHO05D004311 9.1e-239 830.5 663 73.3
Haze_06507 Corylus avellana HOM05D003743 ORTHO05D004311 1.6e-238 829.7 664 73.2
MELO3C017564.2 Cucumis melo HOM05D003743 ORTHO05D004311 3.5e-238 828.6 663 70.7
Duzib160G0164 Durio zibethinus HOM05D003743 ORTHO05D004311 1.3e-237 826.6 668 72.3
VMungo0251G3484 Vigna mungo HOM05D003743 ORTHO05D004311 2.3e-237 825.9 663 73.0
Phvul.002G226300 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 3.8e-237 825.1 663 72.9
Psat7g112160 Pisum sativum HOM05D003743 ORTHO05D004311 5.0e-237 824.7 663 71.6
Eucgr.E03353 Eucalyptus grandis HOM05D003743 ORTHO05D004311 1.5e-236 823.2 664 72.1
Sabra11G0033300 Salix brachista HOM05D003743 ORTHO05D004311 1.9e-236 822.8 665 71.4
COL.COLO4_31510 Corchorus olitorius HOM05D003743 ORTHO05D004311 5.5e-236 821.2 664 72.4
Lalb_Chr05g0218341 Lupinus albus HOM05D003743 ORTHO05D004311 1.6e-235 819.7 662 72.7
Gohir.D10G024500 Gossypium hirsutum HOM05D003743 ORTHO05D004311 2.1e-235 819.3 673 71.5
Gorai.011G025800 Gossypium raimondii HOM05D003743 ORTHO05D004311 3.6e-235 818.5 672 71.3
Medtr4g089070 Medicago truncatula HOM05D003743 ORTHO05D004311 1.4e-234 816.6 662 70.7
Duzib235G1026 Durio zibethinus HOM05D003743 ORTHO05D004311 1.8e-234 816.2 671 71.4
Gohir.A10G023800 Gossypium hirsutum HOM05D003743 ORTHO05D004311 4.4e-233 811.6 673 70.9
Potri.011G047900 Populus trichocarpa HOM05D003743 ORTHO05D004311 2.9e-232 808.9 666 71.0
PGR042G1300 Punica granatum HOM05D003743 ORTHO05D004311 3.7e-232 808.5 671 68.0
Dinv07531 Davidia involucrata HOM05D003743 ORTHO05D004311 1.1e-231 807.0 664 70.3
Ca_25733_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 7.0e-231 804.3 664 71.2
Sabra04G0024300 Salix brachista HOM05D003743 ORTHO05D004311 2.3e-229 799.3 664 70.5
QL05p039342 Quercus lobata HOM05D003743 ORTHO05D004311 4.3e-228 795.0 662 70.8
QL10p057179 Quercus lobata HOM05D003743 ORTHO05D004311 4.3e-228 795.0 662 70.8
CANSAT35G0257 Cannabis sativa HOM05D003743 ORTHO05D004311 8.9e-226 787.3 673 69.2
Hma1.2p1_0126F.1_g059170 Hydrangea macrophylla HOM05D003743 ORTHO05D004311 2.9e-224 782.3 661 70.2
TPR.G12063 Trifolium pratense HOM05D003743 ORTHO05D004311 2.9e-224 782.3 662 68.9
TWI23G0181 Tripterygium wilfordii HOM05D003743 ORTHO05D004311 4.9e-224 781.6 663 67.0
TAR627G0572 Trochodendron aralioides HOM05D003743 ORTHO05D004311 7.0e-223 777.7 666 67.6
arahy.Tifrunner.gnm1.ann1.I4CLDN Arachis hypogaea HOM05D003743 ORTHO05D004311 5.0e-221 771.5 666 67.0
Lj4g0023106 Lotus japonicus HOM05D003743 ORTHO05D004311 9.5e-220 767.3 664 69.3
THA.LOC104819165 Tarenaya hassleriana HOM05D003743 ORTHO05D004311 2.1e-219 766.1 659 66.0
Ciclev10028000m.g Citrus clementina HOM05D003743 ORTHO05D004311 2.8e-219 765.8 667 67.3
CSS0028072 Camellia sinensis var. sinensis HOM05D003743 ORTHO05D004311 3.4e-217 758.8 640 68.0
Aa31LG2G9550 Aethionema arabicum HOM05D003743 ORTHO05D004311 2.1e-214 749.6 661 67.5
Carub.0002s0416 Capsella rubella HOM05D003743 ORTHO05D004311 2.1e-214 749.6 659 66.8
QL03p016879 Quercus lobata HOM05D003743 ORTHO05D004311 3.0e-213 745.7 662 66.6
Thhalv10023338m.g Eutrema salsugineum HOM05D003743 ORTHO05D004311 4.3e-212 741.9 659 65.4
TAR629G2996 Trochodendron aralioides HOM05D003743 ORTHO05D004311 5.6e-212 741.5 670 66.3
BcaC06g31829 Brassica carinata HOM05D003743 ORTHO05D004311 1.1e-210 737.3 666 65.0
AL2G15400 Arabidopsis lyrata HOM05D003743 ORTHO05D004311 4.0e-210 735.3 659 66.2
AT1G61040 Arabidopsis thaliana HOM05D003743 ORTHO05D004311 8.9e-210 734.2 659 66.0
Atru.chr7.2377 Acer truncatum HOM05D003743 ORTHO05D004311 1.6e-206 723.4 663 66.8
Prupe.6G309900 Prunus persica HOM05D003743 ORTHO05D004311 5.1e-205 718.4 660 63.5
Sp2g03480 Schrenkiella parvula HOM05D003743 ORTHO05D004311 1.9e-204 716.5 660 62.9
RcHm_v2.0_Chr3g0457571 Rosa chinensis HOM05D003743 ORTHO05D004311 1.6e-203 713.4 662 62.7
FvH4_6g07870 Fragaria vesca HOM05D003743 ORTHO05D004311 6.2e-203 711.4 661 61.7
CARHR052180 Cardamine hirsuta HOM05D003743 ORTHO05D004311 8.1e-203 711.1 657 64.7
Aqoxy1G03805 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 1.4e-202 710.3 660 64.7
FAN14G1138 Fragaria x ananassa HOM05D003743 ORTHO05D004311 2.4e-202 709.5 661 61.7
Lsat_1_v5_gn_2_40361 Lactuca sativa HOM05D003743 ORTHO05D004311 2.4e-202 709.5 664 63.1
Nitab4.5_0003668g0110 Nicotiana tabacum HOM05D003743 ORTHO05D004311 5.2e-202 708.4 658 62.3
RhsimUnG0044100 Rhododendron simsii HOM05D003743 ORTHO05D004311 5.2e-202 708.4 676 65.7
FAN09G3903 Fragaria x ananassa HOM05D003743 ORTHO05D004311 2.6e-201 706.1 661 61.3
Cc02_g12930 Coffea canephora HOM05D003743 ORTHO05D004311 5.8e-201 704.9 660 62.0
C01p37700 Brassica napus HOM05D003743 ORTHO05D004311 2.2e-200 703.0 664 63.1
Rhsim07G0025200 Rhododendron simsii HOM05D003743 ORTHO05D004311 2.9e-200 702.6 675 65.2
FAN05G4405 Fragaria x ananassa HOM05D003743 ORTHO05D004311 2.4e-199 699.5 661 60.8
Peaxi162Scf00379g00092 Petunia axillaris HOM05D003743 ORTHO05D004311 5.4e-199 698.4 659 63.4
BcaC02g10594 Brassica carinata HOM05D003743 ORTHO05D004311 6.0e-198 694.9 663 62.4
C04p25600 Brassica napus HOM05D003743 ORTHO05D004311 6.0e-198 694.9 663 62.4
BcaC09g49339 Brassica carinata HOM05D003743 ORTHO05D004311 7.8e-198 694.5 660 62.9
Nitab4.5_0003347g0010 Nicotiana tabacum HOM05D003743 ORTHO05D004311 1.7e-197 693.3 658 61.2
PSO170G2796 Papaver somniferum HOM05D003743 ORTHO05D004311 3.0e-197 692.6 660 64.2
Oeu050830.1 Olea europaea HOM05D003743 ORTHO05D004311 1.1e-196 690.6 660 60.6
PSO210G5871 Papaver somniferum HOM05D003743 ORTHO05D004311 3.3e-196 689.1 661 64.6
PGSC0003DMG400022434 Solanum tuberosum HOM05D003743 ORTHO05D004311 4.3e-196 688.7 660 61.4
Glyma.19G170200 Glycine max HOM05D003743 ORTHO05D004311 5.6e-196 688.3 674 62.5
HanXRQChr10g0285841 Helianthus annuus HOM05D003743 ORTHO05D004311 5.6e-196 688.3 668 60.9
Nn1g07800 Nelumbo nucifera HOM05D003743 ORTHO05D004311 2.4e-194 682.9 662 61.3
Sopen02g023440 Solanum pennellii HOM05D003743 ORTHO05D004311 5.3e-194 681.8 660 60.9
Solyc02g078580.1 Solanum lycopersicum HOM05D003743 ORTHO05D004311 6.9e-194 681.4 660 60.8
Glyma.03G168800 Glycine max HOM05D003743 ORTHO05D004311 5.8e-193 678.3 663 61.8
BcaB04g20309 Brassica carinata HOM05D003743 ORTHO05D004311 2.9e-192 676.0 672 60.9
DCAR_008049 Daucus carota HOM05D003743 ORTHO05D004311 1.1e-191 674.1 665 61.5
Phvul.001G167200 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 1.4e-191 673.7 664 61.1
FvH4_6g03621 Fragaria vesca HOM05D003743 ORTHO05D004311 1.9e-191 673.3 399 93.7
CSS0027200 Camellia sinensis var. sinensis HOM05D003743 ORTHO05D004311 4.2e-191 672.2 664 60.2
A01p29850 Brassica napus HOM05D003743 ORTHO05D004311 2.7e-190 669.5 664 61.4
Lalb_Chr16g0383591 Lupinus albus HOM05D003743 ORTHO05D004311 7.9e-190 667.9 661 61.4
MBI04_g36401_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 2.3e-189 666.4 663 63.2
CAN.G1627.16 Capsicum annuum HOM05D003743 ORTHO05D004311 8.7e-189 664.5 666 59.5
FAN02G2028 Fragaria x ananassa HOM05D003743 ORTHO05D004311 3.3e-188 662.5 660 58.6
Ah.09g235750 Amaranthus hybridus HOM05D003743 ORTHO05D004311 2.8e-187 659.4 667 61.0
Migut.M01180 Erythranthe guttata HOM05D003743 ORTHO05D004311 4.8e-187 658.7 663 59.1
Psat3g052160 Pisum sativum HOM05D003743 ORTHO05D004311 4.8e-187 658.7 667 63.6
SGA_v2.0_scaffold100G29640 Striga asiatica HOM05D003743 ORTHO05D004311 1.8e-186 656.8 659 58.7
DCAR_004097 Daucus carota HOM05D003743 ORTHO05D004311 6.9e-186 654.8 666 60.1
Sc05g0007850 Simmondsia chinensis HOM05D003743 ORTHO05D004311 1.5e-185 653.7 664 61.9
Lj8P171T25 Lonicera japonica HOM05D003743 ORTHO05D004311 1.7e-184 650.2 547 68.6
HPP92_024423 Vanilla planifolia HOM05D003743 ORTHO05D004311 8.4e-184 647.9 673 57.5
BraA01t03113Z Brassica rapa HOM05D003743 ORTHO05D004311 1.9e-183 646.7 663 59.7
Lj1g0019037 Lotus japonicus HOM05D003743 ORTHO05D004311 4.2e-183 645.6 663 60.9
EL10Ac8g20336 Beta vulgaris HOM05D003743 ORTHO05D004311 5.5e-183 645.2 665 59.7
SHI01836 Sapria himalayana HOM05D003743 ORTHO05D004311 2.5e-180 636.3 668 57.3
ECA240G0220 Erigeron canadensis HOM05D003743 ORTHO05D004311 4.3e-180 635.6 680 57.6
Ca_08759_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 4.8e-179 632.1 548 68.1
Ca_30219_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 4.8e-179 632.1 548 68.1
VMungo1383G3375 Vigna mungo HOM05D003743 ORTHO05D004311 4.0e-178 629.0 660 58.0
ATR0763G146 Amborella trichopoda HOM05D003743 ORTHO05D004311 7.6e-177 624.8 662 57.3
MBI16_g34925_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 1.0e-176 624.4 663 60.5
CDE02G2043 Ceratophyllum demersum HOM05D003743 ORTHO05D004311 1.3e-176 624.0 667 59.5
Aqoxy3G03252 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 8.4e-176 621.3 669 56.7
MD04G1191400 Malus domestica HOM05D003743 ORTHO05D004311 1.4e-175 620.5 656 56.4
Ah.04g152550 Amaranthus hybridus HOM05D003743 ORTHO05D004311 5.5e-175 618.6 664 55.3
AUR62016972 Chenopodium quinoa HOM05D003743 ORTHO05D004311 1.8e-173 613.6 676 57.4
Phvul.001G224300 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 1.6e-171 607.1 678 57.1
unitig_748.g8020 Utricularia gibba HOM05D003743 ORTHO05D004311 1.1e-170 604.4 665 55.6
CANSAT54G1490 Cannabis sativa HOM05D003743 ORTHO05D004311 3.1e-170 602.8 665 55.3
VMungo1383G2741 Vigna mungo HOM05D003743 ORTHO05D004311 1.5e-169 600.5 675 56.4
TPR.G30857 Trifolium pratense HOM05D003743 ORTHO05D004311 6.5e-168 595.1 665 57.6
SalBow8G3648 Salvia bowleyana HOM05D003743 ORTHO05D004311 8.4e-168 594.7 662 55.1
Lalb_Chr04g0260391 Lupinus albus HOM05D003743 ORTHO05D004311 4.2e-167 592.4 677 53.2
AUR62020979 Chenopodium quinoa HOM05D003743 ORTHO05D004311 2.7e-166 589.7 658 55.3
DCAR_004099 Daucus carota HOM05D003743 ORTHO05D004311 7.9e-166 588.2 664 56.8
Medtr7g099060 Medicago truncatula HOM05D003743 ORTHO05D004311 9.7e-164 581.3 661 56.9
SEGI_13209 Sequoiadendron giganteum HOM05D003743 ORTHO05D004311 1.8e-162 577.0 662 53.3
AUR62014784 Chenopodium quinoa HOM05D003743 ORTHO05D004311 1.6e-158 563.9 656 55.5
MBI16_g34928_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 3.0e-157 559.7 645 57.4
Ca_20186_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 4.8e-155 552.4 684 53.9
Glyma.03G230500 Glycine max HOM05D003743 ORTHO05D004311 8.2e-155 551.6 680 52.5
TPR.G34103 Trifolium pratense HOM05D003743 ORTHO05D004311 1.4e-154 550.8 686 52.9
Zm00001eb410600 Zea mays HOM05D003743 ORTHO05D004311 1.2e-153 547.7 681 52.6
Zm00001eb137720 Zea mays HOM05D003743 ORTHO05D004311 4.5e-153 545.8 666 52.0
AUR62043193 Chenopodium quinoa HOM05D003743 ORTHO05D004311 8.5e-152 541.6 662 51.5
Psat7g225840 Pisum sativum HOM05D003743 ORTHO05D004311 5.5e-151 538.9 688 52.2
arahy.Tifrunner.gnm1.ann1.58ANB0 Arachis hypogaea HOM05D003743 ORTHO05D004311 7.9e-150 535.0 658 53.8
Lj1g0026238 Lotus japonicus HOM05D003743 ORTHO05D004311 8.8e-149 531.6 667 50.7
Os12g0535900 Oryza sativa ssp. japonica HOM05D003743 ORTHO05D004311 9.7e-148 528.1 618 53.1
Sc06g0009130 Simmondsia chinensis HOM05D003743 ORTHO05D004311 1.1e-146 524.6 661 52.6
Medtr4g032885 Medicago truncatula HOM05D003743 ORTHO05D004311 8.0e-142 508.4 681 49.6
EL10Ac8g18529 Beta vulgaris HOM05D003743 ORTHO05D004311 1.3e-136 491.1 550 56.7
Glyma.13G060000 Glycine max HOM05D003743 ORTHO05D004311 2.2e-128 463.8 402 69.4
Mapoly0001s0024 Marchantia polymorpha HOM05D003743 ORTHO05D004311 4.0e-125 453.0 677 46.1
AagrBONN_evm.TU.Sc2ySwM_368.1522 Anthoceros agrestis HOM05D003743 ORTHO05D004311 3.1e-122 443.4 664 45.0
Pp3c12_17420 Physcomitrium patens HOM05D003743 ORTHO05D004311 2.0e-121 440.7 682 44.7
BolC1t03734H Brassica oleracea HOM05D003743 ORTHO05D004311 2.3e-120 437.2 426 63.6
Actinidia05611 Actinidia chinensis HOM05D003743 ORTHO05D004311 2.8e-118 430.3 404 64.9
A03p68920 Brassica napus HOM05D003743 ORTHO05D004311 1.4e-117 427.9 663 46.8
Mapoly0009s0176 Marchantia polymorpha HOM05D003743 ORTHO05D004311 4.6e-97 359.8 674 41.7
BraSC39t46172Z Brassica rapa HOM05D003743 ORTHO05D004311 1.4e-90 338.2 542 44.3
SMO118G0429 Selaginella moellendorffii HOM05D003743 ORTHO05D004311 1.0e-88 332.0 557 44.7
Lj1P877T22 Lonicera japonica HOM05D003743 ORTHO05D004311 1.4e-82 311.6 320 58.1
GSVIVG01006453001 Vitis vinifera HOM05D003743 ORTHO05D004311 6.0e-81 306.2 235 71.5
ECA248G2279 Erigeron canadensis HOM05D003743 ORTHO05D004311 1.6e-70 271.6 400 45.0
Oeu016117.1 Olea europaea HOM05D003743 ORTHO05D004311 1.0e-64 252.3 657 35.8
CBR_g30024 Chara braunii HOM05D003743 ORTHO05D004311 3.8e-59 233.8 652 33.6
Zm00001eb087640 Zea mays HOM05D003743 ORTHO05D004311 1.8e-53 214.9 274 44.9
MBI04_g35990_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 5.5e-42 176.8 223 56.1
MD05G1317500 Malus domestica HOM05D003743 ORTHO05D004311 1.2e-41 175.6 125 78.4
FvH4_6g03622 Fragaria vesca HOM05D003743 ORTHO05D004311 1.3e-35 155.6 78 97.4
Lalb_Chr20g0113451 Lupinus albus HOM05D003743 ORTHO05D004311 1.8e-32 145.2 114 64.0
Aqoxy3G03215 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 1.7e-27 128.6 109 56.0
EL10Ac4g08952 Beta vulgaris HOM05D003743 ORTHO05D004311 1.2e-25 122.5 159 50.9
ECA246G3327 Erigeron canadensis HOM05D001482 ORTHO05D001499 5.7e-23 113.6 81 70.4
SGA_v2.0_scaffold49G18283 Striga asiatica HOM05D003743 ORTHO05D004311 4.5e-20 104.0 391 25.1
Aqoxy3G03213 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 2.5e-18 98.2 74 64.9
Rhsim02G0125200 Rhododendron simsii HOM05D003743 ORTHO05D004311 3.2e-18 97.8 61 73.8
Aqoxy3G03214 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 6.1e-17 93.6 78 65.4
PRCOL_00005809 Prasinoderma coloniale HOM05D003743 ORTHO05D004311 6.5e-11 73.6 312 26.9
EL10Ac5g12107 Beta vulgaris HOM05D003743 ORTHO05D004311 8.6e-11 73.2 61 62.3
Cre03.g196450 Chlamydomonas reinhardtii HOM05D003743 ORTHO05D004311 8.6e-11 73.2 484 25.4
Nitab4.5_0000556g0130 Nicotiana tabacum HOM05D002396 ORTHO05D002779 2.8e-09 68.2 112 49.1
SEGI_28495 Sequoiadendron giganteum HOM05D003743 ORTHO05D004311 7.5e-07 60.1 79 50.6
Cfa025708 Carpinus fangiana HOM05D003743 ORTHO05D004311 3.7e-06 57.8 413 22.5
Lj8E171T0 Lonicera japonica HOM05D003743 ORTHO05D004311 8.3e-06 56.6 83 50.6


User provided reference genes

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