Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0446551 Rosa chinensis HOM05D004276 ORTHO05D005126 1.2e-20 102.1 46 100.0
Atru.chr5.606 Acer truncatum HOM05D004276 ORTHO05D005126 3.0e-11 70.9 34 94.1
Actinidia10089 Actinidia chinensis HOM05D004276 ORTHO05D005126 3.0e-11 70.9 34 94.1
Actinidia20176 Actinidia chinensis HOM05D004276 ORTHO05D005126 3.0e-11 70.9 34 94.1
Aa31LG1G27620 Aethionema arabicum HOM05D004276 ORTHO05D005126 3.0e-11 70.9 34 94.1
Ah.05g180030 Amaranthus hybridus HOM05D004276 ORTHO05D005126 3.0e-11 70.9 34 94.1
ATR0580G146 Amborella trichopoda HOM05D000306 ORTHO05D005993 3.0e-11 70.9 34 94.1
AL1G39200 Arabidopsis lyrata HOM05D004276 ORTHO05D005126 3.0e-11 70.9 34 94.1
MSTRG.17308 Avicennia marina HOM05D004276 ORTHO05D005126 3.0e-11 70.9 34 94.1
EL10Ac1g00335 Beta vulgaris HOM05D004276 ORTHO05D005126 3.0e-11 70.9 34 94.1
CSS0045220 Camellia sinensis var. sinensis HOM05D004276 ORTHO05D005126 3.0e-11 70.9 34 94.1
Cpa.g.sc184.11 Carica papaya HOM05D004276 ORTHO05D005126 3.0e-11 70.9 34 94.1
Cfa003820 Carpinus fangiana HOM05D004276 ORTHO05D005126 3.0e-11 70.9 34 94.1
CiPaw.01G069700 Carya illinoinensis HOM05D004276 ORTHO05D005126 3.0e-11 70.9 34 94.1
CDE05G0403 Ceratophyllum demersum HOM05D004276 ORTHO05D005126 3.0e-11 70.9 34 94.1
CDE11G0794 Ceratophyllum demersum HOM05D004276 ORTHO05D005126 3.0e-11 70.9 34 94.1
Ca_09481_v3 Cicer arietinum L. HOM05D004276 ORTHO05D005126 3.0e-11 70.9 34 94.1
Ca_25855_v3 Cicer arietinum L. HOM05D004276 ORTHO05D005126 3.0e-11 70.9 34 94.1
Ciclev10022345m.g Citrus clementina HOM05D004276 ORTHO05D005126 3.0e-11 70.9 34 94.1
COL.COLO4_06361 Corchorus olitorius HOM05D004276 ORTHO05D005126 3.0e-11 70.9 34 94.1
Haze_15633 Corylus avellana HOM05D004276 ORTHO05D005126 3.0e-11 70.9 34 94.1
DCAR_017055 Daucus carota HOM05D004276 ORTHO05D005126 3.0e-11 70.9 34 94.1
Dinv32536 Davidia involucrata HOM05D004276 ORTHO05D005126 3.0e-11 70.9 34 94.1
Duzib133G1515 Durio zibethinus HOM05D004276 ORTHO05D005126 3.0e-11 70.9 34 94.1
Duzib138G1911 Durio zibethinus HOM05D004276 ORTHO05D005126 3.0e-11 70.9 34 94.1
ECA234G2670 Erigeron canadensis HOM05D004276 ORTHO05D005126 3.0e-11 70.9 34 94.1
FvH4_7g15670 Fragaria vesca HOM05D004276 ORTHO05D005126 3.0e-11 70.9 34 94.1
FAN01G1870 Fragaria x ananassa HOM05D004276 ORTHO05D005126 3.0e-11 70.9 34 94.1
FAN06G0043 Fragaria x ananassa HOM05D004276 ORTHO05D005126 3.0e-11 70.9 34 94.1
FAN06G3034 Fragaria x ananassa HOM05D004276 ORTHO05D005126 3.0e-11 70.9 34 94.1
FAN10G0892 Fragaria x ananassa HOM05D004276 ORTHO05D005126 3.0e-11 70.9 34 94.1
FAN10G4166 Fragaria x ananassa HOM05D004276 ORTHO05D005126 3.0e-11 70.9 34 94.1
Glyma.12G191100 Glycine max HOM05D004276 ORTHO05D005126 3.0e-11 70.9 34 94.1
Glyma.13G310600 Glycine max HOM05D004276 ORTHO05D005126 3.0e-11 70.9 34 94.1
Gohir.A11G093300 Gossypium hirsutum HOM05D004276 ORTHO05D005126 3.0e-11 70.9 34 94.1
Gohir.D11G098300 Gossypium hirsutum HOM05D004276 ORTHO05D005126 3.0e-11 70.9 34 94.1
Gorai.007G104500 Gossypium raimondii HOM05D004276 ORTHO05D005126 3.0e-11 70.9 34 94.1
HanXRQChr17g0562231 Helianthus annuus HOM05D004276 ORTHO05D005126 3.0e-11 70.9 34 94.1
Lsat_1_v5_gn_4_34121 Lactuca sativa HOM05D004276 ORTHO05D005126 3.0e-11 70.9 34 94.1
Lj9C594T5 Lonicera japonica HOM05D004276 ORTHO05D005126 3.0e-11 70.9 34 94.1
Lj1g0009566 Lotus japonicus HOM05D004276 ORTHO05D005126 3.0e-11 70.9 34 94.1
Lj3g0009308 Lotus japonicus HOM05D004276 ORTHO05D005126 3.0e-11 70.9 34 94.1
Lalb_Chr04g0261801 Lupinus albus HOM05D004276 ORTHO05D005126 3.0e-11 70.9 34 94.1
MBI06_g29321_MAGBIO Magnolia biondii HOM05D004276 ORTHO05D005126 3.0e-11 70.9 34 94.1
MD01G1073500 Malus domestica HOM05D004276 ORTHO05D005126 3.0e-11 70.9 34 94.1
Nn5g30298 Nelumbo nucifera HOM05D004276 ORTHO05D005126 3.0e-11 70.9 34 94.1
Nitab4.5_0000305g0280 Nicotiana tabacum HOM05D004276 ORTHO05D005126 3.0e-11 70.9 34 94.1
Os06g0158600 Oryza sativa ssp. japonica HOM05D004276 ORTHO05D005126 3.0e-11 70.9 34 94.1
Peaxi162Scf01254g00021 Petunia axillaris HOM05D004276 ORTHO05D005126 3.0e-11 70.9 34 94.1
Phvul.005G117100 Phaseolus vulgaris HOM05D004276 ORTHO05D005126 3.0e-11 70.9 34 94.1
Psat3g005280 Pisum sativum HOM05D004276 ORTHO05D005126 3.0e-11 70.9 34 94.1
Rhsim01G0168500 Rhododendron simsii HOM05D004276 ORTHO05D005126 3.0e-11 70.9 34 94.1
Rhsim11G0144600 Rhododendron simsii HOM05D004276 ORTHO05D005126 3.0e-11 70.9 34 94.1
RcHm_v2.0_Chr1g0358391 Rosa chinensis HOM05D004276 ORTHO05D005126 3.0e-11 70.9 34 94.1
Hund16683 Selenicereus undatus HOM05D004276 ORTHO05D005126 3.0e-11 70.9 34 94.1
Sc23g0002430 Simmondsia chinensis HOM05D004276 ORTHO05D005126 3.0e-11 70.9 34 94.1
Solyc03g121130.3 Solanum lycopersicum HOM05D004276 ORTHO05D005126 3.0e-11 70.9 34 94.1
Sopen03g039960 Solanum pennellii HOM05D004276 ORTHO05D005126 3.0e-11 70.9 34 94.1
PGSC0003DMG402002606 Solanum tuberosum HOM05D004276 ORTHO05D005126 3.0e-11 70.9 34 94.1
SGA_v2.0_scaffold95G28798 Striga asiatica HOM05D004276 ORTHO05D005126 3.0e-11 70.9 34 94.1
THA.LOC104802050 Tarenaya hassleriana HOM05D004276 ORTHO05D005126 3.0e-11 70.9 34 94.1
Thecc.01G349900 Theobroma cacao HOM05D004276 ORTHO05D005126 3.0e-11 70.9 34 94.1
TWI14G0490 Tripterygium wilfordii HOM05D004276 ORTHO05D005126 3.0e-11 70.9 34 94.1
TWI59G1141 Tripterygium wilfordii HOM05D004276 ORTHO05D005126 3.0e-11 70.9 34 94.1
unitig_736.g22824 Utricularia gibba HOM05D004276 ORTHO05D005126 3.0e-11 70.9 34 94.1
HPP92_002823 Vanilla planifolia HOM05D004276 ORTHO05D005126 3.0e-11 70.9 34 94.1
HPP92_002881 Vanilla planifolia HOM05D004276 ORTHO05D005126 3.0e-11 70.9 34 94.1
HPP92_002892 Vanilla planifolia HOM05D004276 ORTHO05D005126 3.0e-11 70.9 34 94.1
VMungo1080G0287 Vigna mungo HOM05D004276 ORTHO05D005126 3.0e-11 70.9 34 94.1
GSVIVG01026915001 Vitis vinifera HOM05D004276 ORTHO05D005126 3.0e-11 70.9 34 94.1
GSVIVG01027024001 Vitis vinifera HOM05D004276 ORTHO05D005126 3.0e-11 70.9 34 94.1
Zm00001eb376200 Zea mays HOM05D004276 ORTHO05D005126 3.0e-11 70.9 34 94.1
Zm00001eb376230 Zea mays HOM05D004276 ORTHO05D005126 3.0e-11 70.9 34 94.1
Zm00001eb376270 Zea mays HOM05D004276 ORTHO05D005126 3.0e-11 70.9 34 94.1
Zm00001eb376300 Zea mays HOM05D004276 ORTHO05D005126 3.0e-11 70.9 34 94.1
Zm00001eb376330 Zea mays HOM05D004276 ORTHO05D005126 3.0e-11 70.9 34 94.1
Cc02_g38790 Coffea canephora HOM05D004276 ORTHO05D005126 3.9e-11 70.5 34 91.2
CANSAT78G1628 Cannabis sativa HOM05D004276 ORTHO05D005126 6.6e-11 69.7 34 91.2
ClCG10G016120 Citrullus lanatus HOM05D004276 ORTHO05D005126 6.6e-11 69.7 34 91.2
MELO3C009766.2 Cucumis melo HOM05D004276 ORTHO05D005126 6.6e-11 69.7 34 91.2
CsaV3_3G040290 Cucumis sativus L. HOM05D004276 ORTHO05D005126 6.6e-11 69.7 34 91.2
Migut.B01814 Erythranthe guttata HOM05D004276 ORTHO05D005126 6.6e-11 69.7 34 91.2
Migut.N01579 Erythranthe guttata HOM05D004276 ORTHO05D005126 6.6e-11 69.7 34 91.2
Thhalv10001643m.g Eutrema salsugineum HOM05D004276 ORTHO05D005126 6.6e-11 69.7 34 91.2
Sed0018576 Sechium edule HOM05D004276 ORTHO05D005126 6.6e-11 69.7 34 91.2
Eucgr.E00082 Eucalyptus grandis HOM05D004276 ORTHO05D005126 8.6e-11 69.3 34 91.2
CARHR025440 Cardamine hirsuta HOM05D004276 ORTHO05D005126 1.1e-10 68.9 34 91.2
Oeu004920.1 Olea europaea HOM05D004276 ORTHO05D005126 1.1e-10 68.9 34 91.2
Oeu048599.1 Olea europaea HOM05D004276 ORTHO05D005126 1.1e-10 68.9 34 91.2
Medtr7g116720 Medicago truncatula HOM05D004276 ORTHO05D005126 1.5e-10 68.6 34 91.2
QL04p058903 Quercus lobata HOM05D004276 ORTHO05D005126 1.5e-10 68.6 34 91.2
QL06p021685 Quercus lobata HOM05D004276 ORTHO05D005126 1.5e-10 68.6 34 91.2
TPR.G4704 Trifolium pratense HOM05D004276 ORTHO05D005126 1.5e-10 68.6 34 91.2
Aqoxy7G00185 Aquilegia oxysepala HOM05D004276 ORTHO05D005126 1.9e-10 68.2 33 93.9
CAN.G1143.25 Capsicum annuum HOM05D004276 ORTHO05D005126 1.9e-10 68.2 33 93.9
AUR62004429 Chenopodium quinoa HOM05D004276 ORTHO05D005126 1.9e-10 68.2 33 93.9
AUR62022636 Chenopodium quinoa HOM05D004276 ORTHO05D005126 1.9e-10 68.2 33 93.9
Glyma.03G254200 Glycine max HOM05D004276 ORTHO05D005126 1.9e-10 68.2 33 93.9
PSO135G0697 Papaver somniferum HOM05D004276 ORTHO05D005126 1.9e-10 68.2 33 93.9
PSO210G0614 Papaver somniferum HOM05D004276 ORTHO05D005126 1.9e-10 68.2 33 93.9
PSO302G0143 Papaver somniferum HOM05D004276 ORTHO05D005126 1.9e-10 68.2 33 93.9
PSO384G3706 Papaver somniferum HOM05D004276 ORTHO05D005126 1.9e-10 68.2 33 93.9
Pp3c11_12810 Physcomitrium patens HOM05D004276 ORTHO05D005126 1.9e-10 68.2 33 93.9
Pp3c7_15560 Physcomitrium patens HOM05D004276 ORTHO05D005126 1.9e-10 68.2 33 93.9
Prupe.2G181300 Prunus persica HOM05D004276 ORTHO05D005126 1.9e-10 68.2 33 93.9
SalBow3G3563 Salvia bowleyana HOM05D004276 ORTHO05D005126 1.9e-10 68.2 33 93.9
SEGI_17768 Sequoiadendron giganteum HOM05D004276 ORTHO05D005126 1.9e-10 68.2 33 93.9
TAR374G1118 Trochodendron aralioides HOM05D004276 ORTHO05D005126 1.9e-10 68.2 33 93.9
TAR375G0154 Trochodendron aralioides HOM05D004276 ORTHO05D005126 1.9e-10 68.2 33 93.9
Gohir.A06G141040 Gossypium hirsutum HOM05D004276 ORTHO05D005126 3.3e-10 67.4 33 93.9
AagrBONN_evm.TU.Sc2ySwM_368.2613 Anthoceros agrestis HOM05D004276 ORTHO05D005126 4.3e-10 67.0 33 90.9
Manes.11G086700 Manihot esculenta HOM05D004276 ORTHO05D005126 4.3e-10 67.0 33 90.9
Medtr6g086290 Medicago truncatula HOM05D004276 ORTHO05D005126 4.3e-10 67.0 34 88.2
Potri.002G166200 Populus trichocarpa HOM05D004276 ORTHO05D005126 4.3e-10 67.0 33 90.9
Potri.014G092600 Populus trichocarpa HOM05D004276 ORTHO05D005126 4.3e-10 67.0 33 90.9
PGR031G2222 Punica granatum HOM05D004276 ORTHO05D005126 4.3e-10 67.0 34 88.2
Sabra14G0067200 Salix brachista HOM05D004276 ORTHO05D005126 4.3e-10 67.0 33 90.9
ATR0585G106 Amborella trichopoda HOM05D004276 ORTHO05D005126 5.6e-10 66.6 32 93.8
AL4G45500 Arabidopsis lyrata HOM05D004276 ORTHO05D005126 5.6e-10 66.6 34 88.2
AT2G46230 Arabidopsis thaliana HOM05D004276 ORTHO05D005126 5.6e-10 66.6 34 88.2
Carub.0004s2893 Capsella rubella HOM05D004276 ORTHO05D005126 5.6e-10 66.6 34 88.2
CBR_g20329 Chara braunii HOM05D004276 ORTHO05D005126 5.6e-10 66.6 33 90.9
Mapoly0007s0029 Marchantia polymorpha HOM05D004276 ORTHO05D005126 9.5e-10 65.9 33 87.9
SMO117G0002 Selaginella moellendorffii HOM05D004276 ORTHO05D005126 2.1e-09 64.7 33 87.9
arahy.Tifrunner.gnm1.ann1.4FI6MM Arachis hypogaea HOM05D004276 ORTHO05D005126 2.8e-09 64.3 33 87.9
arahy.Tifrunner.gnm1.ann1.BP50A3 Arachis hypogaea HOM05D004276 ORTHO05D005126 2.8e-09 64.3 33 87.9
arahy.Tifrunner.gnm1.ann1.K2BJ17 Arachis hypogaea HOM05D004276 ORTHO05D005126 2.8e-09 64.3 33 87.9
arahy.Tifrunner.gnm1.ann1.X3APAR Arachis hypogaea HOM05D004276 ORTHO05D005126 2.8e-09 64.3 33 87.9
BcaC02g07027 Brassica carinata HOM05D004276 ORTHO05D005126 3.6e-09 63.9 34 88.2
BcaC02g12509 Brassica carinata HOM05D004276 ORTHO05D005126 3.6e-09 63.9 34 88.2
A04p34320 Brassica napus HOM05D004276 ORTHO05D005126 3.6e-09 63.9 34 88.2
A05p01570 Brassica napus HOM05D004276 ORTHO05D005126 3.6e-09 63.9 34 88.2
C04p01790 Brassica napus HOM05D004276 ORTHO05D005126 3.6e-09 63.9 34 88.2
C04p72140 Brassica napus HOM05D004276 ORTHO05D005126 3.6e-09 63.9 34 88.2
BraA04t18893Z Brassica rapa HOM05D004276 ORTHO05D005126 3.6e-09 63.9 34 88.2
BraA05t19152Z Brassica rapa HOM05D004276 ORTHO05D005126 3.6e-09 63.9 34 88.2
MBI07_g03903_MAGBIO Magnolia biondii HOM05D004276 ORTHO05D005126 3.6e-09 63.9 34 85.3
Sp4g28280 Schrenkiella parvula HOM05D004276 ORTHO05D005126 3.6e-09 63.9 34 88.2
Cre16.g679450 Chlamydomonas reinhardtii HOM05D004276 ORTHO05D005126 6.2e-09 63.2 34 79.4
SalBow1G3478 Salvia bowleyana HOM05D004276 ORTHO05D005126 6.2e-09 63.2 31 87.1
MCO11G412 Micromonas commoda HOM05D004276 ORTHO05D005126 8.1e-09 62.8 34 85.3
BcaB06g29435 Brassica carinata HOM05D004276 ORTHO05D005126 1.8e-08 61.6 34 85.3
BcaC02g12702 Brassica carinata HOM05D004276 ORTHO05D005126 1.8e-08 61.6 34 85.3
RcHm_v2.0_Chr1g0326781 Rosa chinensis HOM05D004276 ORTHO05D005126 3.4e-07 57.4 33 81.8
Haze_27571 Corylus avellana HOM05D004276 ORTHO05D005126 8.4e-06 52.8 33 72.7
RcHm_v2.0_Chr3g0464711 Rosa chinensis HOM05D004276 ORTHO05D005126 8.4e-06 52.8 33 78.8


User provided reference genes

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