Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0426211 Rosa chinensis HOM05D004611 ORTHO05D005794 0.0e+00 2181.0 1134 100.0
FAN07G0444 Fragaria x ananassa HOM05D004611 ORTHO05D005794 0.0e+00 2012.3 1180 90.3
FvH4_4g20770 Fragaria vesca HOM05D004611 ORTHO05D005794 0.0e+00 2001.1 1139 92.4
FAN12G0652 Fragaria x ananassa HOM05D004611 ORTHO05D005794 0.0e+00 1980.3 1180 89.2
Prupe.1G111500 Prunus persica HOM05D004611 ORTHO05D005794 0.0e+00 1846.6 1143 84.4
MD16G1147800 Malus domestica HOM05D004611 ORTHO05D005794 0.0e+00 1780.4 1167 80.5
MD13G1148000 Malus domestica HOM05D004611 ORTHO05D005794 0.0e+00 1771.5 1167 80.3
CiPaw.02G072100 Carya illinoinensis HOM05D004611 ORTHO05D005794 0.0e+00 1622.8 1145 75.1
Cfa015689 Carpinus fangiana HOM05D004611 ORTHO05D005794 0.0e+00 1612.8 1150 75.5
Manes.03G208700 Manihot esculenta HOM05D004611 ORTHO05D005794 0.0e+00 1602.0 1141 75.4
Sabra08G0076500 Salix brachista HOM05D004611 ORTHO05D005794 0.0e+00 1590.9 1137 75.1
Lj6A696G31 Lonicera japonica HOM05D004611 ORTHO05D005794 0.0e+00 1590.1 1161 73.8
QL06p013322 Quercus lobata HOM05D004611 ORTHO05D005794 0.0e+00 1587.4 1149 74.0
Potri.008G101200 Populus trichocarpa HOM05D004611 ORTHO05D005794 0.0e+00 1582.8 1158 73.7
Gohir.A02G056200 Gossypium hirsutum HOM05D004611 ORTHO05D005794 0.0e+00 1577.4 1146 74.5
COL.COLO4_34558 Corchorus olitorius HOM05D004611 ORTHO05D005794 0.0e+00 1564.7 1141 73.9
Thecc.04G307400 Theobroma cacao HOM05D004611 ORTHO05D005794 0.0e+00 1557.0 1142 74.3
FAN17G1213 Fragaria x ananassa HOM05D004611 ORTHO05D005794 0.0e+00 1556.6 903 91.3
PGR004G0015 Punica granatum HOM05D004611 ORTHO05D005794 0.0e+00 1550.4 1138 73.0
ClCG06G004360 Citrullus lanatus HOM05D004611 ORTHO05D005794 0.0e+00 1549.6 1139 74.0
TWI73G0848 Tripterygium wilfordii HOM05D004611 ORTHO05D005794 0.0e+00 1544.6 1134 72.7
Eucgr.H04083 Eucalyptus grandis HOM05D004611 ORTHO05D005794 0.0e+00 1539.2 1152 72.2
Glyma.09G031900 Glycine max HOM05D004611 ORTHO05D005794 0.0e+00 1537.7 1153 72.2
Duzib151G0109 Durio zibethinus HOM05D004611 ORTHO05D005794 0.0e+00 1536.5 1144 72.9
arahy.Tifrunner.gnm1.ann1.VX19JK Arachis hypogaea HOM05D004611 ORTHO05D005794 0.0e+00 1534.2 1147 72.5
arahy.Tifrunner.gnm1.ann1.J0E0JD Arachis hypogaea HOM05D004611 ORTHO05D005794 0.0e+00 1531.5 1147 72.3
Sed0020756 Sechium edule HOM05D004611 ORTHO05D005794 0.0e+00 1531.5 1139 72.7
Gohir.D02G061400 Gossypium hirsutum HOM05D004611 ORTHO05D005794 0.0e+00 1529.6 1145 72.8
Gorai.005G069100 Gossypium raimondii HOM05D004611 ORTHO05D005794 0.0e+00 1529.6 1145 72.8
CSS0006805 Camellia sinensis var. sinensis HOM05D004611 ORTHO05D005794 0.0e+00 1526.9 1148 71.2
Atru.chr4.3104 Acer truncatum HOM05D004611 ORTHO05D005794 0.0e+00 1516.9 1147 72.4
Ciclev10004185m.g Citrus clementina HOM05D004611 ORTHO05D005794 0.0e+00 1515.0 1170 70.7
Lj6g0013514 Lotus japonicus HOM05D004611 ORTHO05D005794 0.0e+00 1513.0 1149 71.7
Psat1g162720 Pisum sativum HOM05D004611 ORTHO05D005794 0.0e+00 1504.6 1151 70.8
CANSAT78G0742 Cannabis sativa HOM05D004611 ORTHO05D005794 0.0e+00 1503.8 1173 70.4
Lalb_Chr18g0058501 Lupinus albus HOM05D004611 ORTHO05D005794 0.0e+00 1497.3 1145 71.5
DCAR_030442 Daucus carota HOM05D004611 ORTHO05D005794 0.0e+00 1495.3 1137 70.4
MELO3C021251.2 Cucumis melo HOM05D004611 ORTHO05D005794 0.0e+00 1491.5 1141 71.6
Glyma.15G136900 Glycine max HOM05D004611 ORTHO05D005794 0.0e+00 1491.1 1154 70.5
Nitab4.5_0000062g0520 Nicotiana tabacum HOM05D004611 ORTHO05D005794 0.0e+00 1484.9 1143 70.2
Ca_00946_v3 Cicer arietinum L. HOM05D004611 ORTHO05D005794 0.0e+00 1484.5 1145 70.8
Ca_00952_v3 Cicer arietinum L. HOM05D004611 ORTHO05D005794 0.0e+00 1484.5 1145 70.8
Haze_00831 Corylus avellana HOM05D004611 ORTHO05D005794 0.0e+00 1483.8 1168 70.3
Actinidia02513 Actinidia chinensis HOM05D004611 ORTHO05D005794 0.0e+00 1483.0 1154 69.9
VMungo0540G0237 Vigna mungo HOM05D004611 ORTHO05D005794 0.0e+00 1483.0 1149 70.5
Phvul.006G121000 Phaseolus vulgaris HOM05D004611 ORTHO05D005794 0.0e+00 1481.8 1148 70.2
Nn8g40813 Nelumbo nucifera HOM05D004611 ORTHO05D005794 0.0e+00 1480.7 1149 69.8
Rhsim02G0001700 Rhododendron simsii HOM05D004611 ORTHO05D005794 0.0e+00 1480.7 1147 69.7
CsaV3_6G000020 Cucumis sativus L. HOM05D004611 ORTHO05D005794 0.0e+00 1467.6 1140 71.2
vmacro15164 Vaccinium macrocarpon HOM05D004611 ORTHO05D005794 0.0e+00 1466.4 1151 69.8
Migut.N00024 Erythranthe guttata HOM05D004611 ORTHO05D005794 0.0e+00 1462.6 1138 69.3
PSO541G3737 Papaver somniferum HOM05D004611 ORTHO05D005794 0.0e+00 1457.6 1150 68.8
AUR62030016 Chenopodium quinoa HOM05D004611 ORTHO05D005794 0.0e+00 1453.3 1151 68.0
PSO675G3276 Papaver somniferum HOM05D004611 ORTHO05D005794 0.0e+00 1452.2 1150 68.8
CAN.G179.3 Capsicum annuum HOM05D004611 ORTHO05D005794 0.0e+00 1447.2 1144 68.8
MSTRG.21753 Avicennia marina HOM05D004611 ORTHO05D005794 0.0e+00 1446.0 1138 68.5
Cc03_g00470 Coffea canephora HOM05D004611 ORTHO05D005794 0.0e+00 1445.6 1135 69.3
SGA_v2.0_scaffold123G33405 Striga asiatica HOM05D004611 ORTHO05D005794 0.0e+00 1444.9 1205 67.5
THA.LOC104818864 Tarenaya hassleriana HOM05D004611 ORTHO05D005794 0.0e+00 1437.9 1138 69.3
AL8G23880 Arabidopsis lyrata HOM05D004611 ORTHO05D005794 0.0e+00 1434.5 1142 68.3
Aqoxy2G02628 Aquilegia oxysepala HOM05D004611 ORTHO05D005794 0.0e+00 1433.3 1169 67.2
CARHR258790 Cardamine hirsuta HOM05D004611 ORTHO05D005794 0.0e+00 1427.5 1140 68.5
Carub.0008s0980 Capsella rubella HOM05D004611 ORTHO05D005794 0.0e+00 1426.4 1141 68.3
AT5G49930 Arabidopsis thaliana HOM05D004611 ORTHO05D005794 0.0e+00 1424.1 1140 68.2
GSVIVG01034941001 Vitis vinifera HOM05D004611 ORTHO05D005794 0.0e+00 1422.9 1135 68.9
Aa31LG3G6800 Aethionema arabicum HOM05D004611 ORTHO05D005794 0.0e+00 1420.2 1134 68.6
Sp6g11490 Schrenkiella parvula HOM05D004611 ORTHO05D005794 0.0e+00 1417.1 1163 67.1
Lsat_1_v5_gn_1_40220 Lactuca sativa HOM05D004611 ORTHO05D005794 0.0e+00 1415.2 1145 67.2
Thhalv10012510m.g Eutrema salsugineum HOM05D004611 ORTHO05D005794 0.0e+00 1414.4 1166 67.4
C03p33270 Brassica napus HOM05D004611 ORTHO05D005794 0.0e+00 1410.6 1162 67.0
BcaC01g04844 Brassica carinata HOM05D004611 ORTHO05D005794 0.0e+00 1407.9 1162 66.9
BcaB01g02933 Brassica carinata HOM05D004611 ORTHO05D005794 0.0e+00 1406.0 1165 66.5
BolC3t15649H Brassica oleracea HOM05D004611 ORTHO05D005794 0.0e+00 1405.6 1164 66.8
BraA03t11969Z Brassica rapa HOM05D004611 ORTHO05D005794 0.0e+00 1403.7 1164 66.8
A03p27560 Brassica napus HOM05D004611 ORTHO05D005794 0.0e+00 1401.7 1165 66.6
Sc25g0001590 Simmondsia chinensis HOM05D004611 ORTHO05D005794 0.0e+00 1385.5 1108 67.8
TPR.G10113 Trifolium pratense HOM05D004611 ORTHO05D005794 0.0e+00 1385.2 1136 67.1
ATR0693G069 Amborella trichopoda HOM05D004611 ORTHO05D005794 0.0e+00 1384.0 1146 66.3
Ah.07g203900 Amaranthus hybridus HOM05D004611 ORTHO05D005794 0.0e+00 1379.0 1160 64.7
HanXRQChr11g0353941 Helianthus annuus HOM05D004611 ORTHO05D005794 0.0e+00 1379.0 1168 66.0
AUR62002591 Chenopodium quinoa HOM05D004611 ORTHO05D005794 0.0e+00 1376.7 1148 65.8
MBI19_g32689_MAGBIO Magnolia biondii HOM05D004611 ORTHO05D005794 0.0e+00 1374.4 1144 66.4
EL10Ac3g06291 Beta vulgaris HOM05D004611 ORTHO05D005794 0.0e+00 1366.7 1154 65.3
DCAR_002526 Daucus carota HOM05D004611 ORTHO05D005794 0.0e+00 1351.3 1151 64.6
ECA247G1486 Erigeron canadensis HOM05D004611 ORTHO05D005794 0.0e+00 1307.0 1151 63.4
Os12g0564600 Oryza sativa ssp. japonica HOM05D004611 ORTHO05D005794 0.0e+00 1298.5 1173 61.5
Zm00001eb136770 Zea mays HOM05D004611 ORTHO05D005794 0.0e+00 1296.6 1215 59.9
Dinv15127 Davidia involucrata HOM05D004611 ORTHO05D005794 0.0e+00 1269.2 888 75.7
TAR362G1323 Trochodendron aralioides HOM05D004611 ORTHO05D005794 0.0e+00 1256.1 935 72.1
Nitab4.5_0003678g0010 Nicotiana tabacum HOM05D004611 ORTHO05D005794 0.0e+00 1184.5 1021 64.3
Pp3c6_29680 Physcomitrium patens HOM05D004611 ORTHO05D005794 0.0e+00 1092.0 1236 51.9
CDE02G0179 Ceratophyllum demersum HOM05D004611 ORTHO05D005794 0.0e+00 1079.7 728 75.4
AagrBONN_evm.TU.Sc2ySwM_344.977 Anthoceros agrestis HOM05D004611 ORTHO05D005794 3.9e-311 1071.6 1206 50.6
Mapoly0029s0152 Marchantia polymorpha HOM05D004611 ORTHO05D005794 7.7e-310 1067.4 1224 50.7
SMO356G0321 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 4.4e-289 998.4 1153 51.3
GSVIVG01017617001 Vitis vinifera HOM05D004611 ORTHO05D005794 5.2e-274 948.3 741 68.6
CBR_g49302 Chara braunii HOM05D004611 ORTHO05D005794 3.1e-258 896.0 1399 42.0
Peaxi162Scf00126g01513 Petunia axillaris HOM05D004611 ORTHO05D005794 4.9e-248 862.1 589 77.6
Solyc01g057850.4 Solanum lycopersicum HOM05D004611 ORTHO05D005794 1.6e-243 847.0 589 75.7
Sopen01g023180 Solanum pennellii HOM05D004611 ORTHO05D005794 3.9e-229 799.3 545 76.9
PGSC0003DMG401001235 Solanum tuberosum HOM05D004611 ORTHO05D005794 1.5e-228 797.3 538 78.1
Oeu045272.1 Olea europaea HOM05D004611 ORTHO05D005794 1.1e-223 781.2 537 76.5
unitig_746.g26903 Utricularia gibba HOM05D004611 ORTHO05D005794 1.9e-220 770.4 620 67.1
Sopen01g023170 Solanum pennellii HOM05D004611 ORTHO05D005794 6.5e-208 728.8 613 64.8
Oeu045271.1 Olea europaea HOM05D004611 ORTHO05D005794 5.3e-186 656.0 600 61.7
PRCOL_00000926 Prasinoderma coloniale HOM05D004611 ORTHO05D005794 3.5e-177 626.7 1162 38.1
Solyc01g057840.3 Solanum lycopersicum HOM05D004611 ORTHO05D005794 1.7e-171 607.8 551 61.7
HPP92_010928 Vanilla planifolia HOM05D004611 ORTHO05D005794 3.5e-169 600.1 548 60.9
PGSC0003DMG402001235 Solanum tuberosum HOM05D004611 ORTHO05D005794 1.5e-167 594.7 534 62.0
Peaxi162Scf00126g01512 Petunia axillaris HOM05D004611 ORTHO05D005794 1.6e-142 511.5 530 56.0
HPP92_010927 Vanilla planifolia HOM05D004611 ORTHO05D005794 3.1e-141 507.3 389 67.6
Actinidia14243 Actinidia chinensis HOM05D004611 ORTHO05D005794 6.8e-141 506.1 463 63.3
GSVIVG01017631001 Vitis vinifera HOM05D004611 ORTHO05D005794 6.8e-133 479.6 347 73.8
Cpa.g.sc146.72 Carica papaya HOM05D004611 ORTHO05D005794 3.4e-132 477.2 331 74.9
MCO13G239 Micromonas commoda HOM05D004611 ORTHO05D005794 3.4e-116 424.1 776 36.3
unitig_746.g26902 Utricularia gibba HOM05D004611 ORTHO05D005794 1.8e-109 401.7 480 52.5
GSVIVG01017626001 Vitis vinifera HOM05D004611 ORTHO05D005794 2.5e-103 381.3 373 60.6
GSVIVG01017613001 Vitis vinifera HOM05D004611 ORTHO05D005794 1.6e-102 378.6 374 59.9
SEGI_12646 Sequoiadendron giganteum HOM05D004611 ORTHO05D005794 1.1e-101 375.9 540 45.6
arahy.Tifrunner.gnm1.ann1.JPBR4U Arachis hypogaea HOM05D004611 ORTHO05D005794 8.7e-96 356.3 240 79.6
SEGI_02813 Sequoiadendron giganteum HOM05D004611 ORTHO05D005794 7.6e-92 343.2 358 53.6
Cfa025106 Carpinus fangiana HOM05D004611 ORTHO05D005794 9.3e-90 336.3 1177 28.8
Cre17.g734961 Chlamydomonas reinhardtii HOM05D004611 ORTHO05D005794 1.0e-80 306.2 270 57.8
Oeu046590.2 Olea europaea HOM05D004611 ORTHO05D005794 1.5e-79 302.4 424 49.5
CDE02G2799 Ceratophyllum demersum HOM05D004611 ORTHO05D005794 9.1e-77 293.1 245 66.9
TAR362G0625 Trochodendron aralioides HOM05D004611 ORTHO05D005794 7.0e-69 266.9 216 67.6
Cpa.g.sc146.70 Carica papaya HOM05D004611 ORTHO05D005794 7.2e-66 256.9 236 61.0
GSVIVG01017633001 Vitis vinifera HOM05D004611 ORTHO05D005794 1.5e-63 249.2 177 71.8
SEGI_18823 Sequoiadendron giganteum HOM05D004611 ORTHO05D005794 2.6e-63 248.4 147 82.3
Lsat_1_v5_gn_5_111761 Lactuca sativa HOM05D004611 ORTHO05D029976 1.7e-62 245.7 365 45.5
arahy.Tifrunner.gnm1.ann1.PAF7VJ Arachis hypogaea HOM05D004611 ORTHO05D005794 2.8e-62 245.0 149 83.9
Lsat_1_v5_gn_3_85221 Lactuca sativa HOM05D004611 ORTHO05D029976 1.7e-59 235.7 365 44.4
Lsat_1_v5_gn_2_109460 Lactuca sativa HOM05D004611 ORTHO05D029976 1.1e-58 233.0 365 43.8
Lsat_1_v5_gn_1_27520 Lactuca sativa HOM05D004611 ORTHO05D029976 3.2e-58 231.5 365 43.8
Actinidia07518 Actinidia chinensis HOM05D004611 ORTHO05D005794 2.7e-57 228.4 198 63.6
Actinidia07517 Actinidia chinensis HOM05D004611 ORTHO05D005794 8.0e-49 200.3 106 93.4
arahy.Tifrunner.gnm1.ann1.MSK2EL Arachis hypogaea HOM05D004611 ORTHO05D005794 2.6e-47 195.3 113 85.8
CANSAT35G0087 Cannabis sativa HOM05D004611 ORTHO05D005794 1.4e-45 189.5 180 63.3
arahy.Tifrunner.gnm1.ann1.631YT7 Arachis hypogaea HOM05D004611 ORTHO05D005794 9.1e-45 186.8 111 83.8
arahy.Tifrunner.gnm1.ann1.N4MQ0H Arachis hypogaea HOM05D004611 ORTHO05D005794 2.0e-44 185.7 113 82.3
arahy.Tifrunner.gnm1.ann1.G1FZ3Z Arachis hypogaea HOM05D004611 ORTHO05D005794 3.8e-43 181.4 113 80.5
arahy.Tifrunner.gnm1.ann1.80REVR Arachis hypogaea HOM05D004611 ORTHO05D005794 5.0e-43 181.0 113 80.5
arahy.Tifrunner.gnm1.ann1.F9ANIH Arachis hypogaea HOM05D004611 ORTHO05D005794 4.7e-41 174.5 106 84.0
arahy.Tifrunner.gnm1.ann1.KEPZ3C Arachis hypogaea HOM05D004611 ORTHO05D005794 6.8e-40 170.6 109 79.8
SMO356G0537 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 1.5e-39 169.5 590 29.2
Atru.chr6.2576 Acer truncatum HOM05D004611 ORTHO05D005794 2.6e-39 168.7 97 85.6
arahy.Tifrunner.gnm1.ann1.LTB099 Arachis hypogaea HOM05D004611 ORTHO05D005794 7.0e-37 160.6 99 80.8
Actinidia25067 Actinidia chinensis HOM05D004611 ORTHO05D005794 1.2e-36 159.8 89 87.6
Cpa.g.sc146.71 Carica papaya HOM05D004611 ORTHO05D005794 1.3e-35 156.4 82 95.1
SMO356G0656 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 2.6e-31 142.1 123 60.2
SMO356G0045 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 6.0e-28 131.0 147 46.3
TPR.G40539 Trifolium pratense HOM05D004611 ORTHO05D005794 2.3e-24 119.0 174 47.7
TPR.G31403 Trifolium pratense HOM05D004611 ORTHO05D005794 4.0e-24 118.2 70 88.6
HanXRQChr06g0164931 Helianthus annuus HOM05D004611 ORTHO05D005794 4.9e-22 111.3 85 67.1
COL.COLO4_13521 Corchorus olitorius HOM05D004611 ORTHO05D005794 4.1e-21 108.2 152 46.1
arahy.Tifrunner.gnm1.ann1.0CQZ6Z Arachis hypogaea HOM05D000862 ORTHO05D000003 7.1e-21 107.5 75 73.3
arahy.Tifrunner.gnm1.ann1.R4H24K Arachis hypogaea HOM05D000862 ORTHO05D000003 2.1e-20 105.9 75 72.0
HanXRQChr04g0096671 Helianthus annuus HOM05D004611 ORTHO05D005794 1.0e-19 103.6 73 71.2


User provided reference genes

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