Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0419091 Rosa chinensis HOM05D000528 ORTHO05D341608 5.6e-33 143.7 72 100.0
RcHm_v2.0_Chr2g0130521 Rosa chinensis HOM05D000528 ORTHO05D344787 1.8e-23 112.1 61 91.8
RcHm_v2.0_Chr2g0138841 Rosa chinensis HOM05D000528 ORTHO05D025577 5.3e-23 110.5 58 96.6
RcHm_v2.0_Chr6g0280591 Rosa chinensis HOM05D000528 ORTHO05D345493 2.2e-21 105.1 60 86.7
Prupe.7G189500 Prunus persica HOM05D000528 ORTHO05D000999 2.2e-16 88.6 67 74.6
RcHm_v2.0_Chr2g0096511 Rosa chinensis HOM05D000528 ORTHO05D000999 3.7e-16 87.8 67 73.1
FvH4_1g09670 Fragaria vesca HOM05D000528 ORTHO05D000999 8.2e-16 86.7 67 73.1
FAN19G1221 Fragaria x ananassa HOM05D000528 ORTHO05D000999 8.2e-16 86.7 67 73.1
FAN26G1955 Fragaria x ananassa HOM05D000528 ORTHO05D000999 8.2e-16 86.7 67 73.1
FAN26G3208 Fragaria x ananassa HOM05D000528 ORTHO05D000999 8.2e-16 86.7 67 73.1
MBI13_g05971_MAGBIO Magnolia biondii HOM05D000528 ORTHO05D000999 1.1e-15 86.3 67 74.6
FAN28G2663 Fragaria x ananassa HOM05D000528 ORTHO05D000999 1.8e-15 85.5 67 73.1
Potri.006G216900 Populus trichocarpa HOM05D000528 ORTHO05D000999 1.8e-15 85.5 67 70.1
COL.COLO4_21179 Corchorus olitorius HOM05D000528 ORTHO05D000999 2.4e-15 85.1 67 68.7
FAN23G1517 Fragaria x ananassa HOM05D000528 ORTHO05D000999 2.4e-15 85.1 67 71.6
Cpa.g.sc82.34 Carica papaya HOM05D000528 ORTHO05D000999 9.0e-15 83.2 67 68.7
FAN23G1603 Fragaria x ananassa HOM05D000528 ORTHO05D000999 9.0e-15 83.2 42 92.9
MD02G1105600 Malus domestica HOM05D000528 ORTHO05D000999 9.0e-15 83.2 67 70.1
Sed0018294 Sechium edule HOM05D000528 ORTHO05D000999 9.0e-15 83.2 67 67.2
PSO017G2681 Papaver somniferum HOM05D000528 ORTHO05D000999 2.0e-14 82.0 65 72.3
PSO170G1988 Papaver somniferum HOM05D000528 ORTHO05D000999 2.0e-14 82.0 65 72.3
Sabra06G0167300 Salix brachista HOM05D000528 ORTHO05D000999 2.0e-14 82.0 67 67.2
Sed0012879 Sechium edule HOM05D000528 ORTHO05D000999 2.0e-14 82.0 67 67.2
ClCG05G002580 Citrullus lanatus HOM05D000528 ORTHO05D000999 2.6e-14 81.6 67 65.7
Thhalv10002369m.g Eutrema salsugineum HOM05D000528 ORTHO05D000999 2.6e-14 81.6 67 65.7
MD15G1225500 Malus domestica HOM05D000528 ORTHO05D000999 2.6e-14 81.6 67 68.7
GSVIVG01014993001 Vitis vinifera HOM05D000528 ORTHO05D000999 2.6e-14 81.6 67 67.2
Dinv42440 Davidia involucrata HOM05D000528 ORTHO05D000999 3.4e-14 81.3 67 65.7
Thecc.09G067600 Theobroma cacao HOM05D000528 ORTHO05D000999 3.4e-14 81.3 67 65.7
AT3G43300 Arabidopsis thaliana HOM05D000528 ORTHO05D000999 4.5e-14 80.9 67 65.7
A06p26630 Brassica napus HOM05D000528 ORTHO05D000999 4.5e-14 80.9 67 65.7
C03p67850 Brassica napus HOM05D000528 ORTHO05D000999 4.5e-14 80.9 67 65.7
BolSC21t60253H Brassica oleracea HOM05D000528 ORTHO05D000999 4.5e-14 80.9 67 65.7
BraA06t25597Z Brassica rapa HOM05D000528 ORTHO05D000999 4.5e-14 80.9 67 65.7
Carub.0005s0916 Capsella rubella HOM05D000528 ORTHO05D000999 4.5e-14 80.9 67 65.7
Sp5g17840 Schrenkiella parvula HOM05D000528 ORTHO05D000999 4.5e-14 80.9 67 65.7
Aa31LG4G12930 Aethionema arabicum HOM05D000528 ORTHO05D000999 5.9e-14 80.5 67 65.7
MELO3C006224.2 Cucumis melo HOM05D000528 ORTHO05D000999 5.9e-14 80.5 67 64.2
Aqoxy6G02695 Aquilegia oxysepala HOM05D000528 ORTHO05D000999 7.7e-14 80.1 67 68.7
Ca_21350_v3 Cicer arietinum L. HOM05D000528 ORTHO05D000999 7.7e-14 80.1 67 70.1
TAR626G1794 Trochodendron aralioides HOM05D000528 ORTHO05D000999 7.7e-14 80.1 67 64.2
AL5G21370 Arabidopsis lyrata HOM05D000528 ORTHO05D000999 1.0e-13 79.7 67 64.2
CANSAT56G4237 Cannabis sativa HOM05D000528 ORTHO05D000999 1.0e-13 79.7 67 65.7
Cfa021584 Carpinus fangiana HOM05D000528 ORTHO05D000999 1.0e-13 79.7 67 65.7
Haze_21237 Corylus avellana HOM05D000528 ORTHO05D000999 1.0e-13 79.7 67 65.7
PGR142G1496 Punica granatum HOM05D000528 ORTHO05D000999 1.0e-13 79.7 67 64.2
THA.LOC104810976 Tarenaya hassleriana HOM05D000528 ORTHO05D000999 1.0e-13 79.7 67 64.2
CARHR153370 Cardamine hirsuta HOM05D000528 ORTHO05D000999 1.3e-13 79.3 67 65.7
AUR62038332 Chenopodium quinoa HOM05D000528 ORTHO05D000999 1.3e-13 79.3 67 64.2
Dinv25491 Davidia involucrata HOM05D000528 ORTHO05D000999 1.3e-13 79.3 67 64.2
Gohir.D07G018100 Gossypium hirsutum HOM05D000528 ORTHO05D000999 1.3e-13 79.3 67 62.7
Gorai.001G018700 Gossypium raimondii HOM05D000528 ORTHO05D000999 1.3e-13 79.3 67 62.7
AUR62023914 Chenopodium quinoa HOM05D000528 ORTHO05D000999 1.7e-13 79.0 67 64.2
Gohir.A07G018300 Gossypium hirsutum HOM05D000528 ORTHO05D000999 1.7e-13 79.0 67 62.7
Rhsim05G0000700 Rhododendron simsii HOM05D000528 ORTHO05D000999 1.7e-13 79.0 67 65.7
EL10Ac9g21127 Beta vulgaris HOM05D000528 ORTHO05D000999 2.2e-13 78.6 67 65.7
Ciclev10007246m.g Citrus clementina HOM05D000528 ORTHO05D000999 2.2e-13 78.6 67 62.7
CsaV3_3G010020 Cucumis sativus L. HOM05D000528 ORTHO05D000999 2.2e-13 78.6 67 62.7
Glyma.17G044000 Glycine max HOM05D000528 ORTHO05D000999 2.2e-13 78.6 67 68.7
TPR.G12643 Trifolium pratense HOM05D000528 ORTHO05D000999 2.2e-13 78.6 67 68.7
Cc09_g04400 Coffea canephora HOM05D000528 ORTHO05D000999 2.9e-13 78.2 67 67.2
Lj1A1154G40 Lonicera japonica HOM05D000528 ORTHO05D000999 2.9e-13 78.2 67 64.2
Lj4g0008783 Lotus japonicus HOM05D000528 ORTHO05D000999 2.9e-13 78.2 67 67.2
Manes.16G088500 Manihot esculenta HOM05D000528 ORTHO05D000999 2.9e-13 78.2 66 60.6
Glyma.13G115800 Glycine max HOM05D000528 ORTHO05D000999 3.8e-13 77.8 67 67.2
Psat4g020000 Pisum sativum HOM05D000528 ORTHO05D000999 3.8e-13 77.8 67 67.2
Rhsim02G0256900 Rhododendron simsii HOM05D000528 ORTHO05D000999 3.8e-13 77.8 67 64.2
DCAR_027484 Daucus carota HOM05D000528 ORTHO05D000999 5.0e-13 77.4 67 62.7
Medtr4g124430 Medicago truncatula HOM05D000528 ORTHO05D000999 5.0e-13 77.4 67 67.2
CiPaw.08G000100 Carya illinoinensis HOM05D000528 ORTHO05D000999 6.5e-13 77.0 66 63.6
Duzib150G1295 Durio zibethinus HOM05D000528 ORTHO05D000999 6.5e-13 77.0 67 61.2
Gohir.A05G037300 Gossypium hirsutum HOM05D000528 ORTHO05D000999 6.5e-13 77.0 67 62.7
Gohir.D05G038800 Gossypium hirsutum HOM05D000528 ORTHO05D000999 6.5e-13 77.0 67 62.7
Oeu007685.1 Olea europaea HOM05D000528 ORTHO05D000999 6.5e-13 77.0 67 64.2
Ah.01g016930 Amaranthus hybridus HOM05D000528 ORTHO05D000999 8.5e-13 76.6 67 61.2
Manes.03G054900 Manihot esculenta HOM05D000528 ORTHO05D000999 8.5e-13 76.6 67 61.2
ATR0006G069 Amborella trichopoda HOM05D000528 ORTHO05D000999 1.1e-12 76.3 67 65.7
arahy.Tifrunner.gnm1.ann1.JF9XSQ Arachis hypogaea HOM05D000528 ORTHO05D000999 1.1e-12 76.3 67 65.7
arahy.Tifrunner.gnm1.ann1.Z2MV1Y Arachis hypogaea HOM05D000528 ORTHO05D000999 1.1e-12 76.3 67 65.7
Lalb_Chr12g0200411 Lupinus albus HOM05D000528 ORTHO05D000999 1.1e-12 76.3 67 64.2
Phvul.003G126000 Phaseolus vulgaris HOM05D000528 ORTHO05D000999 1.4e-12 75.9 67 65.7
vmacro06377 Vaccinium macrocarpon HOM05D000528 ORTHO05D000999 1.4e-12 75.9 67 61.2
VMungo1215G1674 Vigna mungo HOM05D000528 ORTHO05D000999 1.4e-12 75.9 67 65.7
THA.LOC104799601 Tarenaya hassleriana HOM05D000528 ORTHO05D000999 1.9e-12 75.5 67 61.2
TWI34G0978 Tripterygium wilfordii HOM05D000528 ORTHO05D000999 1.9e-12 75.5 67 59.7
Zm00001eb324440 Zea mays HOM05D000528 ORTHO05D000999 1.9e-12 75.5 67 61.2
CSS0027335 Camellia sinensis var. sinensis HOM05D000528 ORTHO05D000999 2.5e-12 75.1 67 62.7
Eucgr.C00756 Eucalyptus grandis HOM05D000528 ORTHO05D000999 2.5e-12 75.1 67 59.7
Gorai.009G039300 Gossypium raimondii HOM05D000528 ORTHO05D000999 2.5e-12 75.1 67 61.2
Solyc12g017830.3 Solanum lycopersicum HOM05D000528 ORTHO05D000999 7.2e-12 73.6 67 59.7
Sopen12g008630 Solanum pennellii HOM05D000528 ORTHO05D000999 7.2e-12 73.6 67 59.7
Zm00001eb107040 Zea mays HOM05D000528 ORTHO05D000999 9.4e-12 73.2 67 59.7
DCAR_023798 Daucus carota HOM05D000528 ORTHO05D000999 1.2e-11 72.8 67 61.2
Hma1.2p1_0179F.1_g079070 Hydrangea macrophylla HOM05D000528 ORTHO05D000999 1.6e-11 72.4 67 59.7
Lsat_1_v5_gn_4_40140 Lactuca sativa HOM05D000528 ORTHO05D000999 1.6e-11 72.4 67 61.2
Sc03g0004600 Simmondsia chinensis HOM05D000528 ORTHO05D000999 1.6e-11 72.4 67 58.2
Actinidia39603 Actinidia chinensis HOM05D000528 ORTHO05D000999 2.1e-11 72.0 66 60.6
ECA234G2762 Erigeron canadensis HOM05D000528 ORTHO05D000999 2.7e-11 71.6 67 58.2
Oeu062025.1 Olea europaea HOM05D000528 ORTHO05D000999 2.7e-11 71.6 67 61.2
HPP92_012348 Vanilla planifolia HOM05D000528 ORTHO05D000999 3.6e-11 71.2 67 59.7
Nn6g31501 Nelumbo nucifera HOM05D000528 ORTHO05D000999 6.1e-11 70.5 67 62.7
HanXRQChr16g0521011 Helianthus annuus HOM05D000528 ORTHO05D000999 1.0e-10 69.7 67 58.2
SalBow1G1474 Salvia bowleyana HOM05D000528 ORTHO05D000999 1.0e-10 69.7 66 59.1
ECA248G1999 Erigeron canadensis HOM05D000528 ORTHO05D000999 1.4e-10 69.3 67 55.2
HanXRQChr01g0017721 Helianthus annuus HOM05D000528 ORTHO05D000999 1.4e-10 69.3 66 54.5
Lalb_Chr07g0181491 Lupinus albus HOM05D000528 ORTHO05D000999 1.4e-10 69.3 67 59.7
MSTRG.8180 Avicennia marina HOM05D000528 ORTHO05D000999 2.3e-10 68.6 67 59.7
CDE06G1912 Ceratophyllum demersum HOM05D000528 ORTHO05D000999 2.3e-10 68.6 67 59.7
Hund00753 Selenicereus undatus HOM05D000528 ORTHO05D000999 3.0e-10 68.2 67 58.2
Migut.F01825 Erythranthe guttata HOM05D000528 ORTHO05D000999 5.1e-10 67.4 67 58.2
Pp3c18_8290 Physcomitrium patens HOM05D000528 ORTHO05D000999 8.8e-10 66.6 67 58.2
TWI63G0826 Tripterygium wilfordii HOM05D000528 ORTHO05D000999 8.8e-10 66.6 67 53.7
MSTRG.27425 Avicennia marina HOM05D000528 ORTHO05D000999 1.1e-09 66.2 67 53.7
Migut.F02072 Erythranthe guttata HOM05D000528 ORTHO05D000999 1.5e-09 65.9 67 58.2
SalBow3G2418 Salvia bowleyana HOM05D000528 ORTHO05D000999 2.5e-09 65.1 67 56.7
unitig_699.g19739 Utricularia gibba HOM05D000528 ORTHO05D000999 2.5e-09 65.1 67 56.7
Pp3c21_12020 Physcomitrium patens HOM05D000528 ORTHO05D000999 3.3e-09 64.7 67 55.2
Pp3c21_12080 Physcomitrium patens HOM05D000528 ORTHO05D000999 3.3e-09 64.7 67 55.2
Lsat_1_v5_gn_1_84121 Lactuca sativa HOM05D000528 ORTHO05D000999 4.3e-09 64.3 67 49.3
SGA_v2.0_scaffold122G33228 Striga asiatica HOM05D000528 ORTHO05D000999 5.7e-09 63.9 85 48.2
SMO347G0425 Selaginella moellendorffii HOM05D000528 ORTHO05D000999 9.7e-09 63.2 71 52.1
SGA_v2.0_scaffold13G06349 Striga asiatica HOM05D000528 ORTHO05D000999 3.7e-08 61.2 67 55.2
Mapoly0003s0171 Marchantia polymorpha HOM05D000528 ORTHO05D000999 4.8e-08 60.8 67 49.3
Peaxi162Scf00006g03411 Petunia axillaris HOM05D000528 ORTHO05D000999 1.1e-07 59.7 32 78.1
Nitab4.5_0000219g0110 Nicotiana tabacum HOM05D000528 ORTHO05D000999 1.4e-07 59.3 32 78.1
Nitab4.5_0006028g0020 Nicotiana tabacum HOM05D000528 ORTHO05D000999 1.4e-07 59.3 32 78.1
SHI27962 Sapria himalayana HOM05D000528 ORTHO05D000001 1.8e-07 58.9 63 49.2
unitig_736.g22501 Utricularia gibba HOM05D000528 ORTHO05D000999 4.1e-07 57.8 66 48.5
Pp3c8_19790 Physcomitrium patens HOM05D000528 ORTHO05D000999 6.9e-07 57.0 69 46.4
AagrBONN_evm.TU.Sc2ySwM_117.2708 Anthoceros agrestis HOM05D000528 ORTHO05D000999 9.1e-07 56.6 66 45.5
AagrBONN_evm.TU.Sc2ySwM_117.2712 Anthoceros agrestis HOM05D000528 ORTHO05D000999 9.1e-07 56.6 66 45.5
CBR_g5727 Chara braunii HOM05D000528 ORTHO05D000999 1.5e-06 55.8 67 46.3
HPP92_021916 Vanilla planifolia HOM05D000528 ORTHO05D000999 1.5e-06 55.8 67 41.8
Zm00001eb206130 Zea mays HOM05D000528 ORTHO05D000999 2.6e-06 55.1 32 62.5
CAN.G8.14 Capsicum annuum HOM05D000528 ORTHO05D000999 4.5e-06 54.3 68 41.2
Oeu025016.1 Olea europaea HOM05D000528 ORTHO05D000999 5.9e-06 53.9 50 50.0
RcHm_v2.0_Chr4g0442741 Rosa chinensis HOM05D000528 ORTHO05D342268 5.9e-06 53.9 29 93.1


User provided reference genes

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