Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0414401 Rosa chinensis HOM05D002899 ORTHO05D010192 3.9e-137 491.5 255 100.0
RcHm_v2.0_Chr4g0414501 Rosa chinensis HOM05D002899 ORTHO05D010192 2.0e-85 319.7 207 82.1
FvH4_4g13670 Fragaria vesca HOM05D002899 ORTHO05D010192 4.3e-59 232.3 268 58.2
FAN12G4041 Fragaria x ananassa HOM05D002899 ORTHO05D010192 2.9e-39 166.4 242 51.7
MD15G1445100 Malus domestica HOM05D002899 ORTHO05D003850 2.1e-13 80.5 162 37.0
MD08G1250100 Malus domestica HOM05D002899 ORTHO05D003850 3.0e-12 76.6 201 33.3
FAN07G1578 Fragaria x ananassa HOM05D002899 ORTHO05D010192 3.9e-12 76.3 83 57.8
Prupe.5G048700 Prunus persica HOM05D002899 ORTHO05D003850 3.3e-11 73.2 161 34.8
Medtr8g010350 Medicago truncatula HOM05D002899 ORTHO05D003850 7.4e-11 72.0 62 58.1
Sc06g0010130 Simmondsia chinensis HOM05D002899 ORTHO05D003850 1.3e-10 71.2 194 30.9
Psat4g207720 Pisum sativum HOM05D002899 ORTHO05D003850 2.8e-10 70.1 61 59.0
Sc11g0002190 Simmondsia chinensis HOM05D002899 ORTHO05D003850 2.8e-10 70.1 194 30.9
PSO339G6595 Papaver somniferum HOM05D002899 ORTHO05D003850 3.7e-10 69.7 160 36.2
Ca_23166_v3 Cicer arietinum L. HOM05D002899 ORTHO05D003850 4.8e-10 69.3 55 61.8
Cc05_g11170 Coffea canephora HOM05D002899 ORTHO05D003850 4.8e-10 69.3 94 45.7
Hma1.2p1_1059F.1_g253030 Hydrangea macrophylla HOM05D002899 ORTHO05D003850 4.8e-10 69.3 158 38.0
CsaV3_2G035840 Cucumis sativus L. HOM05D002899 ORTHO05D003850 6.3e-10 68.9 104 45.2
MSTRG.22435 Avicennia marina HOM05D002899 ORTHO05D003850 8.2e-10 68.6 175 34.9
CAN.G492.37 Capsicum annuum HOM05D002899 ORTHO05D003850 8.2e-10 68.6 164 37.2
AUR62024879 Chenopodium quinoa HOM05D002899 ORTHO05D003850 8.2e-10 68.6 174 31.0
AUR62030668 Chenopodium quinoa HOM05D002899 ORTHO05D003850 1.1e-09 68.2 166 32.5
MBI02_g25679_MAGBIO Magnolia biondii HOM05D002899 ORTHO05D003850 1.1e-09 68.2 173 34.1
EL10Ac2g02592 Beta vulgaris HOM05D002899 ORTHO05D003850 1.4e-09 67.8 158 35.4
Gohir.D10G191600 Gossypium hirsutum HOM05D002899 ORTHO05D003850 1.4e-09 67.8 173 32.9
Gorai.011G214400 Gossypium raimondii HOM05D002899 ORTHO05D003850 1.4e-09 67.8 160 33.8
Lj5P331T27 Lonicera japonica HOM05D002899 ORTHO05D003850 1.4e-09 67.8 58 62.1
Lju926C12T4 Lonicera japonica HOM05D002899 ORTHO05D003850 1.4e-09 67.8 160 36.9
RcHm_v2.0_Chr7g0218481 Rosa chinensis HOM05D002899 ORTHO05D003850 1.4e-09 67.8 163 33.1
unitig_21.g20691 Utricularia gibba HOM05D002899 ORTHO05D003850 1.4e-09 67.8 102 44.1
ECA247G1085 Erigeron canadensis HOM05D002899 ORTHO05D003850 1.8e-09 67.4 165 34.5
FvH4_5g27320 Fragaria vesca HOM05D002899 ORTHO05D003850 1.8e-09 67.4 161 34.2
FAN04G0489 Fragaria x ananassa HOM05D002899 ORTHO05D003850 1.8e-09 67.4 161 32.9
FAN18G3509 Fragaria x ananassa HOM05D002899 ORTHO05D003850 1.8e-09 67.4 161 34.2
Gohir.A11G221200 Gossypium hirsutum HOM05D002899 ORTHO05D003850 1.8e-09 67.4 160 35.6
Gohir.D11G234700 Gossypium hirsutum HOM05D002899 ORTHO05D003850 1.8e-09 67.4 160 35.6
Gorai.007G247300 Gossypium raimondii HOM05D002899 ORTHO05D003850 1.8e-09 67.4 160 35.6
Nitab4.5_0009225g0010 Nicotiana tabacum HOM05D002899 ORTHO05D003850 1.8e-09 67.4 60 65.0
Duzib128G1532 Durio zibethinus HOM05D002899 ORTHO05D003850 2.4e-09 67.0 159 36.5
Thhalv10006789m.g Eutrema salsugineum HOM05D002899 ORTHO05D003850 3.1e-09 66.6 162 36.4
Lj9C24T10 Lonicera japonica HOM05D002899 ORTHO05D003850 3.1e-09 66.6 163 35.0
Potri.019G043200 Populus trichocarpa HOM05D002899 ORTHO05D003850 3.1e-09 66.6 60 58.3
Prupe.1G587200 Prunus persica HOM05D002899 ORTHO05D003850 3.1e-09 66.6 156 34.0
Atru.chr12.1814 Acer truncatum HOM05D002899 ORTHO05D003850 4.1e-09 66.2 243 32.9
CDE02G4151 Ceratophyllum demersum HOM05D000614 ORTHO05D000463 5.3e-09 65.9 72 50.0
Eucgr.G00845 Eucalyptus grandis HOM05D002899 ORTHO05D003850 5.3e-09 65.9 165 37.6
Phvul.004G082100 Phaseolus vulgaris HOM05D002899 ORTHO05D003850 5.3e-09 65.9 117 40.2
Sed0003802 Sechium edule HOM05D002899 ORTHO05D003850 5.3e-09 65.9 60 56.7
PSO384G0661 Papaver somniferum HOM05D002899 ORTHO05D003850 6.9e-09 65.5 207 30.4
Sed0007587 Sechium edule HOM05D002899 ORTHO05D003850 6.9e-09 65.5 177 35.0
SEGI_23967 Sequoiadendron giganteum HOM05D002899 ORTHO05D003850 6.9e-09 65.5 162 37.0
AagrBONN_evm.TU.Sc2ySwM_340.341 Anthoceros agrestis HOM05D002899 ORTHO05D003850 9.0e-09 65.1 162 37.7
Cpa.g.sc43.153 Carica papaya HOM05D002899 ORTHO05D003850 9.0e-09 65.1 61 59.0
FAN08G1317 Fragaria x ananassa HOM05D002899 ORTHO05D003850 9.0e-09 65.1 161 34.2
Peaxi162Scf01026g00001 Petunia axillaris HOM05D002899 ORTHO05D003850 9.0e-09 65.1 55 61.8
Atru.chr6.914 Acer truncatum HOM05D002899 ORTHO05D003850 1.2e-08 64.7 115 44.3
BcaB02g06683 Brassica carinata HOM05D002899 ORTHO05D003850 1.2e-08 64.7 94 45.7
BcaC07g41394 Brassica carinata HOM05D002899 ORTHO05D003850 1.2e-08 64.7 86 51.2
Sc09g0008520 Simmondsia chinensis HOM05D002899 ORTHO05D003850 1.2e-08 64.7 82 47.6
Thecc.05G227100 Theobroma cacao HOM05D002899 ORTHO05D003850 1.2e-08 64.7 171 34.5
Actinidia08787 Actinidia chinensis HOM05D002899 ORTHO05D003850 1.5e-08 64.3 158 35.4
Cfa016110 Carpinus fangiana HOM05D002899 ORTHO05D003850 1.5e-08 64.3 179 35.2
DCAR_022992 Daucus carota HOM05D002899 ORTHO05D003850 1.5e-08 64.3 175 34.3
HanXRQChr15g0463941 Helianthus annuus HOM05D002899 ORTHO05D003850 1.5e-08 64.3 176 33.5
AUR62031081 Chenopodium quinoa HOM05D002899 ORTHO05D003850 2.0e-08 63.9 85 47.1
Lalb_Chr09g0328871 Lupinus albus HOM05D002899 ORTHO05D003850 2.0e-08 63.9 115 39.1
Sabra19G0053900 Salix brachista HOM05D002899 ORTHO05D003850 2.0e-08 63.9 56 60.7
MELO3C024757.2 Cucumis melo HOM05D002899 ORTHO05D003850 2.6e-08 63.5 175 33.1
Lsat_1_v5_gn_9_37520 Lactuca sativa HOM05D002899 ORTHO05D003850 2.6e-08 63.5 133 36.8
Oeu028990.1 Olea europaea HOM05D002899 ORTHO05D003850 2.6e-08 63.5 187 31.0
Rhsim06G0232100 Rhododendron simsii HOM05D002899 ORTHO05D003850 2.6e-08 63.5 169 33.7
BcaC07g41444 Brassica carinata HOM05D002899 ORTHO05D003850 3.4e-08 63.2 86 50.0
C08p44090 Brassica napus HOM05D002899 ORTHO05D003850 3.4e-08 63.2 86 50.0
BolC8t51957H Brassica oleracea HOM05D002899 ORTHO05D003850 3.4e-08 63.2 86 50.0
CDE05G1238 Ceratophyllum demersum HOM05D002899 ORTHO05D003850 3.4e-08 63.2 177 31.6
Haze_00347 Corylus avellana HOM05D002899 ORTHO05D003850 3.4e-08 63.2 183 33.3
Nn3g21896 Nelumbo nucifera HOM05D002899 ORTHO05D003850 3.4e-08 63.2 227 31.7
Ah.12g063970 Amaranthus hybridus HOM05D002899 ORTHO05D003850 4.5e-08 62.8 167 31.7
CSS0044416 Camellia sinensis var. sinensis HOM05D002899 ORTHO05D003850 4.5e-08 62.8 159 35.8
AUR62014872 Chenopodium quinoa HOM05D002899 ORTHO05D003850 4.5e-08 62.8 265 30.2
Lsat_1_v5_gn_9_37500 Lactuca sativa HOM05D002899 ORTHO05D003850 4.5e-08 62.8 187 32.6
Solyc10g005990.4 Solanum lycopersicum HOM05D002899 ORTHO05D003850 4.5e-08 62.8 164 34.8
Sopen10g001950 Solanum pennellii HOM05D002899 ORTHO05D003850 4.5e-08 62.8 164 34.8
GSVIVG01024262001 Vitis vinifera HOM05D002899 ORTHO05D003850 4.5e-08 62.8 229 32.3
COL.COLO4_33467 Corchorus olitorius HOM05D002899 ORTHO05D003850 5.8e-08 62.4 182 31.9
Manes.09G130600 Manihot esculenta HOM05D002899 ORTHO05D003850 5.8e-08 62.4 160 33.1
Pp3c19_6430 Physcomitrium patens HOM05D002899 ORTHO05D003850 5.8e-08 62.4 200 28.5
Dinv04696 Davidia involucrata HOM05D002899 ORTHO05D003850 7.6e-08 62.0 157 33.1
Oeu027900.2 Olea europaea HOM05D002899 ORTHO05D003850 7.6e-08 62.0 67 53.7
CiPaw.05G210800 Carya illinoinensis HOM05D002899 ORTHO05D003850 1.0e-07 61.6 166 34.3
ClCG02G007900 Citrullus lanatus HOM05D002899 ORTHO05D003850 1.0e-07 61.6 158 33.5
TAR633G0361 Trochodendron aralioides HOM05D002899 ORTHO05D003850 1.0e-07 61.6 159 38.4
Aa31LG11G5630 Aethionema arabicum HOM05D002899 ORTHO05D003850 1.3e-07 61.2 160 33.1
Glyma.02G073100 Glycine max HOM05D002899 ORTHO05D003850 1.3e-07 61.2 120 40.0
Aqoxy2G00924 Aquilegia oxysepala HOM05D002899 ORTHO05D003850 1.7e-07 60.8 58 53.4
SHI02598 Sapria himalayana HOM05D002899 ORTHO05D003850 1.7e-07 60.8 85 45.9
THA.LOC104805726 Tarenaya hassleriana HOM05D002899 ORTHO05D003850 1.7e-07 60.8 217 31.3
TAR375G0529 Trochodendron aralioides HOM05D002899 ORTHO05D003850 1.7e-07 60.8 158 34.2
ATR1098G071 Amborella trichopoda HOM05D002899 ORTHO05D003850 2.2e-07 60.5 162 30.9
Aqoxy6G01664 Aquilegia oxysepala HOM05D002899 ORTHO05D003850 2.2e-07 60.5 53 62.3
MSTRG.8559 Avicennia marina HOM05D002899 ORTHO05D003850 2.9e-07 60.1 177 33.3
AL1G29240 Arabidopsis lyrata HOM05D002899 ORTHO05D003850 3.8e-07 59.7 158 34.2
HanXRQChr10g0291501 Helianthus annuus HOM05D002899 ORTHO05D003850 5.0e-07 59.3 172 32.0
QL03p062749 Quercus lobata HOM05D002899 ORTHO05D003850 5.0e-07 59.3 50 60.0
Rhsim03G0225400 Rhododendron simsii HOM05D002899 ORTHO05D003850 5.0e-07 59.3 57 57.9
SGA_v2.0_scaffold39G15236 Striga asiatica HOM05D002899 ORTHO05D003850 5.0e-07 59.3 164 33.5
TWI38G1169 Tripterygium wilfordii HOM05D002899 ORTHO05D003850 5.0e-07 59.3 163 33.7
Actinidia27037 Actinidia chinensis HOM05D002899 ORTHO05D003850 6.5e-07 58.9 158 33.5
AT1G17070 Arabidopsis thaliana HOM05D002899 ORTHO05D003850 6.5e-07 58.9 158 32.9
A09p60630 Brassica napus HOM05D002899 ORTHO05D003850 6.5e-07 58.9 159 34.6
Mapoly0085s0035 Marchantia polymorpha HOM05D002899 ORTHO05D003850 6.5e-07 58.9 165 30.9
MCO06G176 Micromonas commoda HOM05D002899 ORTHO05D003850 6.5e-07 58.9 85 44.7
Potri.013G076000 Populus trichocarpa HOM05D002899 ORTHO05D003850 6.5e-07 58.9 59 57.6
PGR142G0302 Punica granatum HOM05D002899 ORTHO05D003850 8.4e-07 58.5 158 31.6
VMungo0464G0921 Vigna mungo HOM05D002899 ORTHO05D003850 8.4e-07 58.5 49 63.3
CARHR017600 Cardamine hirsuta HOM05D002899 ORTHO05D003850 1.1e-06 58.2 161 34.2
Carub.0001s1679 Capsella rubella HOM05D002899 ORTHO05D003850 1.4e-06 57.8 157 34.4
Lalb_Chr16g0385381 Lupinus albus HOM05D002899 ORTHO05D003850 1.9e-06 57.4 36 69.4
Pp3c22_1760 Physcomitrium patens HOM05D002899 ORTHO05D003850 1.9e-06 57.4 200 28.0
QL03p062784 Quercus lobata HOM05D002899 ORTHO05D003850 1.9e-06 57.4 50 60.0
QL03p066723 Quercus lobata HOM05D002899 ORTHO05D003850 1.9e-06 57.4 50 60.0
PGSC0003DMG400014409 Solanum tuberosum HOM05D002899 ORTHO05D003850 2.5e-06 57.0 203 30.5
BolC5t30252H Brassica oleracea HOM05D002899 ORTHO05D010192 3.2e-06 56.6 149 34.9
THA.LOC104823791 Tarenaya hassleriana HOM05D002899 ORTHO05D003850 3.2e-06 56.6 215 27.9
BcaC05g25671 Brassica carinata HOM05D002899 ORTHO05D003850 5.5e-06 55.8 53 58.5
C05p15440 Brassica napus HOM05D002899 ORTHO05D003850 5.5e-06 55.8 84 41.7
SEGI_19651 Sequoiadendron giganteum HOM05D008617 ORTHO05D010792 5.5e-06 55.8 50 56.0
TPR.G6614 Trifolium pratense HOM05D002899 ORTHO05D003850 5.5e-06 55.8 93 43.0


User provided reference genes

Program Settings