Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0413751 Rosa chinensis HOM05D005307 ORTHO05D006695 0.0e+00 1490.3 1038 100.0
FAN07G1190 Fragaria x ananassa HOM05D005307 ORTHO05D006695 0.0e+00 1158.3 1047 81.1
FAN17G0194 Fragaria x ananassa HOM05D005307 ORTHO05D006695 0.0e+00 1151.3 1047 80.4
FvH4_4g13380 Fragaria vesca HOM05D005307 ORTHO05D006695 0.0e+00 1147.5 1047 79.7
FAN12G2903 Fragaria x ananassa HOM05D005307 ORTHO05D006695 0.0e+00 1142.1 1047 80.2
FAN22G0006 Fragaria x ananassa HOM05D005307 ORTHO05D006695 0.0e+00 1080.9 1047 79.8
MD04G1016500 Malus domestica HOM05D005307 ORTHO05D006695 1.3e-260 903.7 1068 68.3
Prupe.1G163200 Prunus persica HOM05D005307 ORTHO05D006695 1.8e-241 840.1 1081 63.5
Haze_11645 Corylus avellana HOM05D005307 ORTHO05D006695 3.7e-218 762.7 672 74.0
QL06p026221 Quercus lobata HOM05D005307 ORTHO05D006695 9.4e-214 748.0 680 70.9
Actinidia35846 Actinidia chinensis HOM05D005307 ORTHO05D006695 8.8e-212 741.5 679 68.8
CSS0004168 Camellia sinensis var. sinensis HOM05D005307 ORTHO05D006695 4.4e-211 739.2 645 71.5
Potri.017G058300 Populus trichocarpa HOM05D005307 ORTHO05D006695 7.5e-211 738.4 691 70.2
Atru.chr3.1814 Acer truncatum HOM05D005307 ORTHO05D006695 3.1e-209 733.0 712 68.5
Manes.03G144900 Manihot esculenta HOM05D005307 ORTHO05D006695 3.8e-207 726.1 672 73.1
Sabra16G0201900 Salix brachista HOM05D005307 ORTHO05D006695 6.5e-207 725.3 684 70.2
Dinv38181 Davidia involucrata HOM05D005307 ORTHO05D006695 1.0e-204 718.0 699 66.5
MELO3C006297.2 Cucumis melo HOM05D005307 ORTHO05D006695 8.8e-204 714.9 665 69.8
Ciclev10004448m.g Citrus clementina HOM05D005307 ORTHO05D006695 1.3e-202 711.1 667 69.4
Glyma.05G152900 Glycine max HOM05D005307 ORTHO05D006695 1.7e-202 710.7 677 68.2
Cfa014955 Carpinus fangiana HOM05D005307 ORTHO05D006695 2.8e-202 709.9 589 75.9
CsaV3_3G010790 Cucumis sativus L. HOM05D005307 ORTHO05D006695 5.4e-201 705.7 677 68.4
Ca_17978_v3 Cicer arietinum L. HOM05D005307 ORTHO05D006695 1.2e-200 704.5 593 76.2
Gohir.A10G128100 Gossypium hirsutum HOM05D005307 ORTHO05D006695 1.2e-200 704.5 664 71.1
Sabra17G0051900 Salix brachista HOM05D005307 ORTHO05D006695 1.6e-200 704.1 706 65.6
Gorai.011G153100 Gossypium raimondii HOM05D005307 ORTHO05D006695 2.0e-200 703.7 625 73.4
Glyma.08G109600 Glycine max HOM05D005307 ORTHO05D006695 5.9e-200 702.2 683 67.8
Gohir.D10G137900 Gossypium hirsutum HOM05D005307 ORTHO05D006695 5.9e-200 702.2 625 73.4
TPR.G11920 Trifolium pratense HOM05D005307 ORTHO05D006695 2.3e-199 700.3 675 69.2
TAR636G0868 Trochodendron aralioides HOM05D005307 ORTHO05D006695 2.3e-199 700.3 655 67.5
Lalb_Chr12g0205581 Lupinus albus HOM05D005307 ORTHO05D006695 9.5e-198 694.9 672 66.4
DCAR_005485 Daucus carota HOM05D005307 ORTHO05D006695 1.2e-197 694.5 680 64.3
Psat7g074720 Pisum sativum HOM05D005307 ORTHO05D006695 1.2e-197 694.5 678 71.1
Medtr8g081640 Medicago truncatula HOM05D005307 ORTHO05D006695 5.2e-196 689.1 634 71.3
HanXRQChr01g0022201 Helianthus annuus HOM05D005307 ORTHO05D006695 6.8e-196 688.7 672 64.9
Sed0024269 Sechium edule HOM05D005307 ORTHO05D006695 1.3e-194 684.5 622 67.7
VMungo0251G3181 Vigna mungo HOM05D005307 ORTHO05D006695 4.9e-194 682.6 620 69.7
Eucgr.H02691 Eucalyptus grandis HOM05D005307 ORTHO05D006695 2.0e-192 677.2 691 62.8
arahy.Tifrunner.gnm1.ann1.GBN5SF Arachis hypogaea HOM05D005307 ORTHO05D006695 4.5e-192 676.0 677 67.9
GSVIVG01001478001 Vitis vinifera HOM05D005307 ORTHO05D006695 2.9e-191 673.3 632 72.0
arahy.Tifrunner.gnm1.ann1.C718TQ Arachis hypogaea HOM05D005307 ORTHO05D006695 1.9e-190 670.6 594 73.6
ECA248G0158 Erigeron canadensis HOM05D005307 ORTHO05D006695 1.9e-190 670.6 676 64.3
Lj4g0027601 Lotus japonicus HOM05D005307 ORTHO05D006695 8.0e-189 665.2 676 65.1
Potri.001G319000 Populus trichocarpa HOM05D005307 ORTHO05D006695 1.4e-188 664.5 570 71.8
Lj3C779T0 Lonicera japonica HOM05D005307 ORTHO05D006695 2.9e-186 656.8 687 62.2
Nitab4.5_0000697g0080 Nicotiana tabacum HOM05D005307 ORTHO05D006695 6.4e-186 655.6 709 65.0
Nitab4.5_0002223g0040 Nicotiana tabacum HOM05D005307 ORTHO05D006695 6.4e-186 655.6 690 65.8
Sc13g0000330 Simmondsia chinensis HOM05D005307 ORTHO05D006695 6.4e-186 655.6 757 58.4
Lsat_1_v5_gn_1_73301 Lactuca sativa HOM05D005307 ORTHO05D006695 8.3e-186 655.2 611 67.4
COL.COLO4_20217 Corchorus olitorius HOM05D005307 ORTHO05D006695 1.1e-185 654.8 636 67.5
TAR365G0199 Trochodendron aralioides HOM05D005307 ORTHO05D006695 1.4e-185 654.4 652 64.9
SHI06461 Sapria himalayana HOM05D005307 ORTHO05D006695 6.0e-184 649.0 695 59.4
PGSC0003DMG400024356 Solanum tuberosum HOM05D005307 ORTHO05D006695 1.1e-182 644.8 696 65.5
Thecc.04G196200 Theobroma cacao HOM05D005307 ORTHO05D006695 3.6e-181 639.8 654 65.0
Migut.G00755 Erythranthe guttata HOM05D005307 ORTHO05D006695 8.9e-180 635.2 709 62.2
Eucgr.L00037 Eucalyptus grandis HOM05D005307 ORTHO05D006695 8.9e-180 635.2 690 60.3
Gorai.005G028400 Gossypium raimondii HOM05D005307 ORTHO05D006695 3.4e-179 633.3 651 64.7
ClCG05G003160 Citrullus lanatus HOM05D005307 ORTHO05D006695 7.5e-179 632.1 717 62.3
Gohir.D02G023000 Gossypium hirsutum HOM05D005307 ORTHO05D006695 6.4e-178 629.0 651 64.4
Aqoxy2G03944 Aquilegia oxysepala HOM05D005307 ORTHO05D006695 4.1e-177 626.3 611 68.7
Sp3g21580 Schrenkiella parvula HOM05D005307 ORTHO05D006695 2.7e-176 623.6 586 66.7
Solyc09g092250.3 Solanum lycopersicum HOM05D005307 ORTHO05D006695 6.0e-176 622.5 702 66.0
Sopen09g035180 Solanum pennellii HOM05D005307 ORTHO05D006695 1.0e-175 621.7 702 66.4
Thhalv10002398m.g Eutrema salsugineum HOM05D005307 ORTHO05D006695 1.7e-175 620.9 579 66.0
SalBow8G0791 Salvia bowleyana HOM05D005307 ORTHO05D006695 1.9e-174 617.5 714 59.9
Oeu002923.1 Olea europaea HOM05D005307 ORTHO05D006695 2.5e-174 617.1 669 60.2
Phvul.003G050400 Phaseolus vulgaris HOM05D005307 ORTHO05D006695 3.3e-174 616.7 706 61.0
MSTRG.4240 Avicennia marina HOM05D005307 ORTHO05D006695 2.0e-171 607.4 678 62.7
THA.LOC104808701 Tarenaya hassleriana HOM05D005307 ORTHO05D006695 7.6e-171 605.5 659 63.3
ATR0561G218 Amborella trichopoda HOM05D005307 ORTHO05D006695 1.7e-170 604.4 663 61.5
Gohir.A02G019700 Gossypium hirsutum HOM05D005307 ORTHO05D006695 1.7e-170 604.4 651 62.4
BraA07t28636Z Brassica rapa HOM05D005307 ORTHO05D006695 2.2e-170 604.0 521 68.3
A07p08510 Brassica napus HOM05D005307 ORTHO05D006695 3.7e-170 603.2 521 69.3
vmacro00443 Vaccinium macrocarpon HOM05D005307 ORTHO05D006695 3.2e-169 600.1 619 64.5
HPP92_024208 Vanilla planifolia HOM05D005307 ORTHO05D006695 5.4e-169 599.4 698 58.5
AT3G23900 Arabidopsis thaliana HOM05D005307 ORTHO05D006695 2.7e-168 597.0 631 62.4
CARHR099860 Cardamine hirsuta HOM05D005307 ORTHO05D006695 3.5e-168 596.7 644 61.0
Cc03_g08380 Coffea canephora HOM05D005307 ORTHO05D006695 6.0e-168 595.9 610 64.8
C07p13250 Brassica napus HOM05D005307 ORTHO05D006695 2.3e-167 594.0 629 63.9
BolC7t41817H Brassica oleracea HOM05D005307 ORTHO05D006695 2.3e-167 594.0 629 63.9
BcaC06g35584 Brassica carinata HOM05D005307 ORTHO05D006695 6.6e-167 592.4 629 63.8
EL10Ac3g07462 Beta vulgaris HOM05D005307 ORTHO05D006695 8.6e-167 592.0 684 56.6
AUR62018565 Chenopodium quinoa HOM05D005307 ORTHO05D006695 8.6e-167 592.0 682 58.2
Sed0018547 Sechium edule HOM05D005307 ORTHO05D006695 8.6e-167 592.0 556 66.7
AL3G38890 Arabidopsis lyrata HOM05D005307 ORTHO05D006695 1.2e-165 588.2 621 62.6
BcaB06g26551 Brassica carinata HOM05D005307 ORTHO05D006695 1.2e-165 588.2 611 61.9
Carub.0003s2420 Capsella rubella HOM05D005307 ORTHO05D006695 1.2e-165 588.2 648 61.9
Peaxi162Scf00047g00141 Petunia axillaris HOM05D005307 ORTHO05D006695 1.6e-165 587.8 723 61.0
CDE05G2932 Ceratophyllum demersum HOM05D005307 ORTHO05D006695 1.1e-164 585.1 610 64.6
AUR62020854 Chenopodium quinoa HOM05D005307 ORTHO05D006695 1.4e-164 584.7 694 58.4
SGA_v2.0_scaffold19G08778 Striga asiatica HOM05D005307 ORTHO05D006695 5.8e-163 579.3 675 60.4
CAN.G1155.22 Capsicum annuum HOM05D005307 ORTHO05D006695 9.9e-163 578.6 621 65.1
Nn1g08214 Nelumbo nucifera HOM05D005307 ORTHO05D006695 8.4e-162 575.5 689 59.1
CDE05G3407 Ceratophyllum demersum HOM05D005307 ORTHO05D006695 2.1e-160 570.9 689 58.8
Oeu043443.2 Olea europaea HOM05D005307 ORTHO05D006695 1.0e-159 568.5 604 61.6
PSO017G6801 Papaver somniferum HOM05D005307 ORTHO05D006695 1.9e-153 547.7 628 59.7
PSO063G4654 Papaver somniferum HOM05D005307 ORTHO05D006695 4.2e-153 546.6 628 59.6
Lalb_Chr07g0186791 Lupinus albus HOM05D005307 ORTHO05D006695 2.1e-152 544.3 652 59.7
Aa31LG8G10470 Aethionema arabicum HOM05D005307 ORTHO05D006695 6.6e-151 539.3 691 54.6
unitig_899.g14865 Utricularia gibba HOM05D005307 ORTHO05D006695 3.1e-148 530.4 492 66.3
CiPaw.01G117700 Carya illinoinensis HOM05D005307 ORTHO05D006695 2.6e-139 500.7 479 70.1
Cpa.g.sc83.42 Carica papaya HOM05D005307 ORTHO05D006695 2.9e-130 470.7 512 66.2
Zm00001eb334080 Zea mays HOM05D005307 ORTHO05D006695 7.7e-115 419.5 491 54.8
Os01g0101600 Oryza sativa ssp. japonica HOM05D005307 ORTHO05D006695 1.6e-112 411.8 609 51.7
MBI07_g27653_MAGBIO Magnolia biondii HOM05D005307 ORTHO05D006695 2.8e-109 401.0 326 71.8
Zm00001eb127130 Zea mays HOM05D005307 ORTHO05D006695 8.5e-106 389.4 492 51.4
SalBow8G0142 Salvia bowleyana HOM05D005307 ORTHO05D006695 1.7e-101 375.2 333 65.8
TAR625G1365 Trochodendron aralioides HOM05D005307 ORTHO05D006695 2.9e-90 337.8 225 76.0
CBR_g48000 Chara braunii HOM05D005307 ORTHO05D006695 1.4e-87 328.9 534 44.8
Mapoly0002s0028 Marchantia polymorpha HOM05D005307 ORTHO05D006695 3.7e-85 320.9 502 45.6
Actinidia33177 Actinidia chinensis HOM05D005307 ORTHO05D006695 3.6e-80 304.3 382 65.2
Lj3A756G29 Lonicera japonica HOM05D005307 ORTHO05D006695 1.4e-76 292.4 331 67.7
C01p39750 Brassica napus HOM05D005307 ORTHO05D006695 1.2e-75 289.3 429 47.8
BolC1t03929H Brassica oleracea HOM05D005307 ORTHO05D006695 2.3e-74 285.0 286 62.6
Pp3c24_4280 Physcomitrium patens HOM05D005307 ORTHO05D006695 1.9e-73 282.0 500 42.8
Pp3c8_5960 Physcomitrium patens HOM05D005307 ORTHO05D006695 2.1e-72 278.5 500 42.6
SalBow8G1782 Salvia bowleyana HOM05D005307 ORTHO05D006695 2.9e-69 268.1 350 60.9
Hund24403 Selenicereus undatus HOM05D005307 ORTHO05D006695 4.1e-68 264.2 188 72.3
A01p31200 Brassica napus HOM05D005307 ORTHO05D006695 3.0e-66 258.1 275 61.8
SEGI_03012 Sequoiadendron giganteum HOM05D005307 ORTHO05D006695 2.1e-64 251.9 314 48.1
Cpa.g.sc83.41 Carica papaya HOM05D005307 ORTHO05D006695 4.4e-62 244.2 180 80.6
arahy.Tifrunner.gnm1.ann1.K4I8TV Arachis hypogaea HOM05D005307 ORTHO05D006695 6.0e-59 233.8 199 67.8
Actinidia33176 Actinidia chinensis HOM05D005307 ORTHO05D006695 2.1e-24 119.0 144 54.2
BcaC03g15749 Brassica carinata HOM05D005307 ORTHO05D006695 6.5e-21 107.5 89 62.9
arahy.Tifrunner.gnm1.ann1.H01PAW Arachis hypogaea HOM05D005307 ORTHO05D006695 8.4e-21 107.1 71 76.1
BolC2t09503H Brassica oleracea HOM05D005307 ORTHO05D006695 2.5e-20 105.5 299 33.4
Psat7g074680 Pisum sativum HOM05D005307 ORTHO05D006695 1.8e-18 99.4 264 38.6
Lj3A756G30 Lonicera japonica HOM05D005307 ORTHO05D006695 5.7e-17 94.4 68 69.1
Lj3C756T3 Lonicera japonica HOM05D005307 ORTHO05D006695 5.7e-17 94.4 90 74.4
MCO02G402 Micromonas commoda HOM05D005307 ORTHO05D006695 1.6e-16 92.8 425 30.6
BraA02t07152Z Brassica rapa HOM05D005307 ORTHO05D006695 1.8e-15 89.4 101 52.5
BolC2t09502H Brassica oleracea HOM05D005307 ORTHO05D006695 2.0e-14 85.9 95 52.6
C02p34830 Brassica napus HOM05D005307 ORTHO05D006695 8.4e-13 80.5 101 50.5
Cre16.g672150 Chlamydomonas reinhardtii HOM05D005307 ORTHO05D006695 8.4e-13 80.5 412 25.7
arahy.Tifrunner.gnm1.ann1.V8QUIX Arachis hypogaea HOM05D000659 ORTHO05D006695 1.6e-11 76.3 71 74.6
BraA01t03245Z Brassica rapa HOM05D005307 ORTHO05D006695 1.6e-11 76.3 83 53.0
BraA02t07151Z Brassica rapa HOM05D005307 ORTHO05D027550 3.6e-11 75.1 398 33.4
arahy.Tifrunner.gnm1.ann1.6LH71N Arachis hypogaea HOM05D005307 ORTHO05D006695 1.3e-08 66.6 139 59.0
AagrBONN_evm.TU.Sc2ySwM_344.2987 Anthoceros agrestis HOM05D005307 ORTHO05D006695 2.8e-08 65.5 101 51.5
A01p24780 Brassica napus HOM05D001023 ORTHO05D000912 2.6e-06 58.9 91 37.4
MCO16G044 Micromonas commoda HOM05D014086 ORTHO05D006295 3.4e-06 58.5 118 36.4
Aa31LG10G1640 Aethionema arabicum HOM05D001023 ORTHO05D000912 4.5e-06 58.2 103 36.9
BcaC04g23542 Brassica carinata HOM05D001023 ORTHO05D000912 4.5e-06 58.2 84 41.7
C09p07240 Brassica napus HOM05D001023 ORTHO05D000912 4.5e-06 58.2 84 41.7
arahy.Tifrunner.gnm1.ann1.6FDN0X Arachis hypogaea HOM05D001023 ORTHO05D000912 5.9e-06 57.8 92 38.0
arahy.Tifrunner.gnm1.ann1.8WSJ5E Arachis hypogaea HOM05D001023 ORTHO05D000912 5.9e-06 57.8 92 38.0
Carub.0001s4292 Capsella rubella HOM05D001023 ORTHO05D000912 5.9e-06 57.8 96 37.5
Migut.M00654 Erythranthe guttata HOM05D001023 ORTHO05D000912 5.9e-06 57.8 104 37.5


User provided reference genes

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