Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0410491 Rosa chinensis HOM05D004786 ORTHO05D005582 9.0e-67 256.9 142 100.0
FAN13G1587 Fragaria x ananassa HOM05D004786 ORTHO05D005582 4.5e-66 254.6 142 98.6
RcHm_v2.0_Chr7g0241821 Rosa chinensis HOM05D004786 ORTHO05D005582 1.7e-65 252.7 142 98.6
FvH4_5g39500 Fragaria vesca HOM05D004786 ORTHO05D005582 3.2e-64 248.4 142 97.9
FAN18G2645 Fragaria x ananassa HOM05D004786 ORTHO05D005582 3.2e-64 248.4 142 97.9
Prupe.2G036200 Prunus persica HOM05D004786 ORTHO05D005582 8.7e-54 213.8 118 91.5
FAN14G2614 Fragaria x ananassa HOM05D004786 ORTHO05D005582 3.3e-53 211.8 116 98.3
CiPaw.08G091100 Carya illinoinensis HOM05D004786 ORTHO05D005582 5.7e-53 211.1 118 88.1
Glyma.10G001200 Glycine max HOM05D004786 ORTHO05D005582 1.1e-51 206.8 126 85.7
Haze_05017 Corylus avellana HOM05D004786 ORTHO05D005582 1.4e-51 206.5 123 84.6
CANSAT01G0603 Cannabis sativa HOM05D004786 ORTHO05D005582 2.4e-51 205.7 118 89.0
Glyma.10G014500 Glycine max HOM05D004786 ORTHO05D005582 3.1e-51 205.3 126 84.9
QL12p029078 Quercus lobata HOM05D004786 ORTHO05D005582 5.3e-51 204.5 116 87.9
arahy.Tifrunner.gnm1.ann1.BSR60Q Arachis hypogaea HOM05D004786 ORTHO05D005582 6.9e-51 204.1 123 84.6
QL02p082487 Quercus lobata HOM05D004786 ORTHO05D005582 6.9e-51 204.1 126 84.1
arahy.Tifrunner.gnm1.ann1.QQF2XI Arachis hypogaea HOM05D004786 ORTHO05D005582 1.2e-50 203.4 123 85.4
TWI18G0747 Tripterygium wilfordii HOM05D004786 ORTHO05D005582 1.2e-50 203.4 126 83.3
Lj5g0024614 Lotus japonicus HOM05D004786 ORTHO05D005582 1.5e-50 203.0 126 83.3
Phvul.007G215700 Phaseolus vulgaris HOM05D004786 ORTHO05D005582 1.5e-50 203.0 123 83.7
Gorai.011G094200 Gossypium raimondii HOM05D004786 ORTHO05D005582 2.0e-50 202.6 123 82.1
arahy.Tifrunner.gnm1.ann1.7GX23T Arachis hypogaea HOM05D004786 ORTHO05D005582 2.6e-50 202.2 123 83.7
Ca_01909_v3 Cicer arietinum L. HOM05D004786 ORTHO05D005582 3.4e-50 201.8 126 84.1
Gohir.D10G086000 Gossypium hirsutum HOM05D004786 ORTHO05D005582 4.5e-50 201.4 123 81.3
COL.COLO4_29184 Corchorus olitorius HOM05D004786 ORTHO05D005582 1.0e-49 200.3 123 82.1
Ciclev10002837m.g Citrus clementina HOM05D004786 ORTHO05D005582 1.7e-49 199.5 127 82.7
Thecc.04G020200 Theobroma cacao HOM05D004786 ORTHO05D005582 2.2e-49 199.1 139 75.5
CSS0028094 Camellia sinensis var. sinensis HOM05D004786 ORTHO05D005582 3.8e-49 198.4 126 79.4
Duzib147G1635 Durio zibethinus HOM05D004786 ORTHO05D005582 3.8e-49 198.4 123 81.3
HanXRQChr01g0000811 Helianthus annuus HOM05D004786 ORTHO05D005582 3.8e-49 198.4 118 82.2
arahy.Tifrunner.gnm1.ann1.U8589F Arachis hypogaea HOM05D004786 ORTHO05D005582 5.0e-49 198.0 123 82.1
Manes.02G090900 Manihot esculenta HOM05D004786 ORTHO05D005582 5.0e-49 198.0 123 80.5
TPR.G19757 Trifolium pratense HOM05D004786 ORTHO05D005582 8.5e-49 197.2 123 80.5
Potri.014G122500 Populus trichocarpa HOM05D004786 ORTHO05D005582 1.4e-48 196.4 124 79.8
Ciclev10022845m.g Citrus clementina HOM05D004786 ORTHO05D005582 1.9e-48 196.1 124 82.3
Rhsim01G0289800 Rhododendron simsii HOM05D004786 ORTHO05D005582 1.9e-48 196.1 126 78.6
Cpa.g.sc18.18 Carica papaya HOM05D004786 ORTHO05D005582 2.5e-48 195.7 118 84.7
MELO3C015937.2 Cucumis melo HOM05D004786 ORTHO05D005582 3.2e-48 195.3 126 81.7
PGR142G0252 Punica granatum HOM05D004786 ORTHO05D005582 3.2e-48 195.3 122 77.9
Sabra14G0090900 Salix brachista HOM05D004786 ORTHO05D005582 3.2e-48 195.3 124 80.6
Hma1.2p1_0089F.1_g045460 Hydrangea macrophylla HOM05D004786 ORTHO05D005582 4.2e-48 194.9 116 82.8
Lalb_Chr11g0063261 Lupinus albus HOM05D004786 ORTHO05D005582 4.2e-48 194.9 126 81.7
Oeu047382.1 Olea europaea HOM05D004786 ORTHO05D005582 4.2e-48 194.9 118 81.4
Actinidia21008 Actinidia chinensis HOM05D004395 ORTHO05D005234 5.5e-48 194.5 126 77.0
CANSAT01G2201 Cannabis sativa HOM05D004786 ORTHO05D005582 7.2e-48 194.1 136 83.1
Cc06_g14210 Coffea canephora HOM05D004786 ORTHO05D005582 7.2e-48 194.1 118 81.4
Dinv27220 Davidia involucrata HOM05D004786 ORTHO05D005582 7.2e-48 194.1 126 79.4
CsaV3_7G029840 Cucumis sativus L. HOM05D004786 ORTHO05D005582 1.2e-47 193.4 126 81.0
Gorai.001G266700 Gossypium raimondii HOM05D004786 ORTHO05D005582 2.1e-47 192.6 123 78.0
Sed0001914 Sechium edule HOM05D004786 ORTHO05D005582 2.1e-47 192.6 118 81.4
Nn4g25644 Nelumbo nucifera HOM05D004786 ORTHO05D005582 2.7e-47 192.2 126 77.0
TAR636G2395 Trochodendron aralioides HOM05D004786 ORTHO05D005582 4.6e-47 191.4 122 77.9
Ca_10295_v3 Cicer arietinum L. HOM05D004786 ORTHO05D005582 6.1e-47 191.0 126 79.4
Eucgr.C00116 Eucalyptus grandis HOM05D004786 ORTHO05D005582 7.9e-47 190.7 118 79.7
CAN.G1164.25 Capsicum annuum HOM05D004786 ORTHO05D005582 1.0e-46 190.3 126 77.0
vmacro02412 Vaccinium macrocarpon HOM05D004786 ORTHO05D005582 1.0e-46 190.3 126 78.6
THA.LOC104801297 Tarenaya hassleriana HOM05D004786 ORTHO05D005582 1.4e-46 189.9 126 79.4
ClCG09G005230 Citrullus lanatus HOM05D004786 ORTHO05D005582 3.0e-46 188.7 125 79.2
Gohir.A10G101800 Gossypium hirsutum HOM05D004786 ORTHO05D005582 3.0e-46 188.7 123 79.7
Nitab4.5_0002158g0250 Nicotiana tabacum HOM05D004786 ORTHO05D005582 3.0e-46 188.7 118 78.0
Nitab4.5_0007940g0040 Nicotiana tabacum HOM05D004786 ORTHO05D005582 3.0e-46 188.7 118 78.0
MSTRG.21673 Avicennia marina HOM05D004786 ORTHO05D005582 3.9e-46 188.3 127 78.0
DCAR_002518 Daucus carota HOM05D004786 ORTHO05D005582 3.9e-46 188.3 123 75.6
Rhsim13G0006100 Rhododendron simsii HOM05D004786 ORTHO05D005582 3.9e-46 188.3 126 77.8
Aqoxy5G00800 Aquilegia oxysepala HOM05D004786 ORTHO05D005582 5.1e-46 188.0 122 76.2
ECA248G3582 Erigeron canadensis HOM05D004786 ORTHO05D005582 5.1e-46 188.0 115 80.0
FvH4_6g14960 Fragaria vesca HOM05D004786 ORTHO05D005582 8.8e-46 187.2 103 99.0
PSO478G0620 Papaver somniferum HOM05D004786 ORTHO05D005582 8.8e-46 187.2 126 73.8
Solyc02g078300.3 Solanum lycopersicum HOM05D004786 ORTHO05D005582 8.8e-46 187.2 126 75.4
Sopen02g023150 Solanum pennellii HOM05D004786 ORTHO05D005582 8.8e-46 187.2 126 75.4
PGSC0003DMG400029688 Solanum tuberosum HOM05D004786 ORTHO05D005582 8.8e-46 187.2 126 75.4
CSS0001467 Camellia sinensis var. sinensis HOM05D004786 ORTHO05D005582 2.0e-45 186.0 126 75.4
CSS0006628 Camellia sinensis var. sinensis HOM05D004786 ORTHO05D005582 2.0e-45 186.0 126 75.4
Migut.D00095 Erythranthe guttata HOM05D004786 ORTHO05D005582 2.0e-45 186.0 126 74.6
Atru.chr5.1041 Acer truncatum HOM05D004786 ORTHO05D005582 3.3e-45 185.3 124 78.2
Nn3g21644 Nelumbo nucifera HOM05D004786 ORTHO05D005582 4.4e-45 184.9 116 77.6
Peaxi162Scf00736g00421 Petunia axillaris HOM05D004786 ORTHO05D005582 4.4e-45 184.9 123 74.0
PSO017G1185 Papaver somniferum HOM05D004786 ORTHO05D005582 5.7e-45 184.5 126 73.0
Psat6g162520 Pisum sativum HOM05D004786 ORTHO05D005582 7.4e-45 184.1 99 90.9
vmacro15120 Vaccinium macrocarpon HOM05D004786 ORTHO05D005582 7.4e-45 184.1 126 75.4
Ah.11g049360 Amaranthus hybridus HOM05D004786 ORTHO05D005582 1.7e-44 183.0 124 75.0
Solyc02g078285.1 Solanum lycopersicum HOM05D004786 ORTHO05D005582 4.8e-44 181.4 126 73.8
GSVIVG01028095001 Vitis vinifera HOM05D004786 ORTHO05D005582 6.3e-44 181.0 141 67.4
Medtr1g087370 Medicago truncatula HOM05D004786 ORTHO05D005582 1.1e-43 180.3 97 90.7
SGA_v2.0_scaffold376G50268 Striga asiatica HOM05D004786 ORTHO05D005582 1.1e-43 180.3 130 71.5
PSO478G2484 Papaver somniferum HOM05D004786 ORTHO05D005582 1.4e-43 179.9 126 71.4
Actinidia21415 Actinidia chinensis HOM05D004786 ORTHO05D005582 3.1e-43 178.7 130 74.6
AUR62024675 Chenopodium quinoa HOM05D004786 ORTHO05D005582 3.1e-43 178.7 123 73.2
SEGI_16103 Sequoiadendron giganteum HOM05D004786 ORTHO05D005582 3.1e-43 178.7 122 72.1
Oeu005869.1 Olea europaea HOM05D004786 ORTHO05D005582 4.1e-43 178.3 123 70.7
EL10As5g23505 Beta vulgaris HOM05D004786 ORTHO05D005582 6.9e-43 177.6 124 73.4
Atru.chr2.1244 Acer truncatum HOM05D004786 ORTHO05D005582 1.2e-42 176.8 127 73.2
Aqoxy2G02794 Aquilegia oxysepala HOM05D004786 ORTHO05D005582 2.0e-42 176.0 117 73.5
unitig_736.g22945 Utricularia gibba HOM05D004786 ORTHO05D005582 3.4e-42 175.3 138 68.8
CDE02G4247 Ceratophyllum demersum HOM05D004786 ORTHO05D005582 7.7e-42 174.1 118 76.3
PSO384G2419 Papaver somniferum HOM05D004786 ORTHO05D005582 1.7e-41 172.9 127 69.3
Atru.chr2.1242 Acer truncatum HOM05D004786 ORTHO05D005582 5.0e-41 171.4 127 71.7
Glyma.10G002500 Glycine max HOM05D004786 ORTHO05D005582 6.5e-41 171.0 106 84.0
Zm00001eb131310 Zea mays HOM05D004786 ORTHO05D005582 1.1e-40 170.2 103 80.6
Os01g0338100 Oryza sativa ssp. japonica HOM05D004786 ORTHO05D005582 4.2e-40 168.3 103 79.6
Hund02934 Selenicereus undatus HOM05D004786 ORTHO05D005582 4.2e-40 168.3 161 59.0
Atru.chr5.1040 Acer truncatum HOM05D004786 ORTHO05D005582 5.5e-40 167.9 124 71.0
Thhalv10009111m.g Eutrema salsugineum HOM05D004786 ORTHO05D005582 5.5e-40 167.9 127 70.1
PSO339G0583 Papaver somniferum HOM05D004786 ORTHO05D005582 7.2e-40 167.5 127 67.7
CARHR001960 Cardamine hirsuta HOM05D004786 ORTHO05D005582 1.6e-39 166.4 122 70.5
Carub.0001s0173 Capsella rubella HOM05D004786 ORTHO05D005582 2.7e-39 165.6 122 70.5
SalBow3G4092 Salvia bowleyana HOM05D004786 ORTHO05D005582 2.7e-39 165.6 126 71.4
AL1G12010 Arabidopsis lyrata HOM05D004786 ORTHO05D005582 3.6e-39 165.2 126 69.0
AT1G02680 Arabidopsis thaliana HOM05D004786 ORTHO05D005582 3.6e-39 165.2 111 73.0
Sc05g0000530 Simmondsia chinensis HOM05D004786 ORTHO05D005582 3.6e-39 165.2 127 67.7
Sp1g01660 Schrenkiella parvula HOM05D004786 ORTHO05D005582 1.0e-38 163.7 127 67.7
BcaC07g36997 Brassica carinata HOM05D004786 ORTHO05D005582 3.0e-38 162.2 122 67.2
C08p00190 Brassica napus HOM05D004786 ORTHO05D005582 3.0e-38 162.2 122 67.2
BolC8t46821H Brassica oleracea HOM05D004786 ORTHO05D005582 3.0e-38 162.2 122 67.2
A10p01370 Brassica napus HOM05D004786 ORTHO05D005582 3.9e-38 161.8 122 68.9
A08p37600 Brassica napus HOM05D004786 ORTHO05D005582 8.8e-38 160.6 111 70.3
BraA08t35657Z Brassica rapa HOM05D004786 ORTHO05D005582 8.8e-38 160.6 111 70.3
C05p01350 Brassica napus HOM05D004786 ORTHO05D005582 1.1e-37 160.2 115 67.8
AUR62011833 Chenopodium quinoa HOM05D004786 ORTHO05D005582 2.0e-37 159.5 164 54.9
BolC5t28917H Brassica oleracea HOM05D004786 ORTHO05D005582 2.6e-37 159.1 115 69.6
BraA10t42413Z Brassica rapa HOM05D004786 ORTHO05D005582 3.3e-37 158.7 123 64.2
Aqoxy293s004 Aquilegia oxysepala HOM05D004786 ORTHO05D005582 5.7e-37 157.9 152 58.6
Aa31LG1G9890 Aethionema arabicum HOM05D004786 ORTHO05D005582 1.3e-36 156.8 158 56.3
AagrBONN_evm.TU.Sc2ySwM_228.4423 Anthoceros agrestis HOM05D004786 ORTHO05D005582 3.7e-36 155.2 113 64.6
SHI21583 Sapria himalayana HOM05D004786 ORTHO05D005582 1.4e-35 153.3 115 69.6
AagrBONN_evm.TU.Sc2ySwM_344.2318 Anthoceros agrestis HOM05D004786 ORTHO05D005582 4.1e-35 151.8 119 62.2
Gohir.A07G224200 Gossypium hirsutum HOM05D004786 ORTHO05D005582 7.0e-35 151.0 87 82.8
TAR633G1250 Trochodendron aralioides HOM05D004786 ORTHO05D005582 7.0e-35 151.0 90 82.2
Mapoly0033s0143 Marchantia polymorpha HOM05D004786 ORTHO05D005582 1.6e-34 149.8 134 59.7
Pp3c10_23650 Physcomitrium patens HOM05D004786 ORTHO05D005582 1.6e-34 149.8 108 63.9
AagrBONN_evm.TU.Sc2ySwM_362.2238 Anthoceros agrestis HOM05D004786 ORTHO05D005582 4.5e-34 148.3 123 57.7
Lsat_1_v5_gn_3_69620 Lactuca sativa HOM05D004786 ORTHO05D005582 5.9e-34 147.9 126 66.7
Pp3c20_20300 Physcomitrium patens HOM05D004786 ORTHO05D005582 1.0e-33 147.1 107 64.5
Mapoly0066s0092 Marchantia polymorpha HOM05D004786 ORTHO05D005582 3.8e-33 145.2 126 58.7
arahy.Tifrunner.gnm1.ann1.8ER521 Arachis hypogaea HOM05D004786 ORTHO05D005582 1.1e-32 143.7 123 65.0
DCAR_030468 Daucus carota HOM05D004786 ORTHO05D005582 2.5e-32 142.5 95 73.7
arahy.Tifrunner.gnm1.ann1.NH5DW8 Arachis hypogaea HOM05D004786 ORTHO05D005582 7.2e-32 141.0 123 65.0
VMungo0720G3029 Vigna mungo HOM05D003159 ORTHO05D005582 4.7e-31 138.3 81 85.2
ATR0068G032 Amborella trichopoda HOM05D004786 ORTHO05D005582 2.3e-30 136.0 96 70.8
CBR_g31434 Chara braunii HOM05D004977 ORTHO05D006454 3.0e-30 135.6 100 63.0
SMO172G0161 Selaginella moellendorffii HOM05D004786 ORTHO05D005582 6.7e-30 134.4 107 63.6
HPP92_025545 Vanilla planifolia HOM05D004786 ORTHO05D005582 2.6e-29 132.5 90 71.1
MD02G1287100 Malus domestica HOM05D004786 ORTHO05D005582 2.0e-26 122.9 69 85.5
Actinidia12745 Actinidia chinensis HOM05D004786 ORTHO05D005582 3.5e-26 122.1 77 79.2
HanXRQChr04g0094601 Helianthus annuus HOM05D004786 ORTHO05D005582 1.1e-24 117.1 78 74.4
PGSC0003DMG400028899 Solanum tuberosum HOM05D000457 ORTHO05D000560 1.1e-24 117.1 77 71.4
BcaB03g13505 Brassica carinata HOM05D004786 ORTHO05D005582 2.5e-24 115.9 73 74.0
BcaB03g15799 Brassica carinata HOM05D004786 ORTHO05D005582 2.5e-24 115.9 95 65.3
HPP92_025439 Vanilla planifolia HOM05D004786 ORTHO05D005582 1.4e-22 110.2 63 79.4
MCO05G258 Micromonas commoda HOM05D004786 ORTHO05D005582 1.2e-21 107.1 119 45.4
Solyc06g036200.2 Solanum lycopersicum HOM05D004786 ORTHO05D005582 2.8e-20 102.4 94 54.3
arahy.Tifrunner.gnm1.ann1.17AZVE Arachis hypogaea HOM05D004786 ORTHO05D005582 1.8e-19 99.8 123 50.4
Haze_27741 Corylus avellana HOM05D004786 ORTHO05D005582 5.9e-18 94.7 89 51.7
SGA_v2.0_scaffold334G49058 Striga asiatica HOM05D004395 ORTHO05D005234 1.7e-17 93.2 56 80.4
PRCOL_00006976 Prasinoderma coloniale HOM05D004786 ORTHO05D005582 3.8e-17 92.0 95 43.2
Dinv10078 Davidia involucrata HOM05D004786 ORTHO05D005582 8.0e-15 84.3 52 76.9
Cre04.g222100 Chlamydomonas reinhardtii HOM05D004786 ORTHO05D005582 1.2e-13 80.5 104 40.4
Cfa022415 Carpinus fangiana HOM05D004786 ORTHO05D005582 5.4e-11 71.6 93 35.5
Gohir.D07G231500 Gossypium hirsutum HOM05D004786 ORTHO05D005582 1.2e-10 70.5 57 61.4
MD02G1287200 Malus domestica HOM05D004786 ORTHO05D005582 1.2e-10 70.5 46 76.1
Cfa024923 Carpinus fangiana HOM05D005019 ORTHO05D126389 5.2e-06 55.1 90 28.9
SEGI_38506 Sequoiadendron giganteum HOM05D000004 ORTHO05D000002 6.8e-06 54.7 33 78.8


User provided reference genes

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