Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0410481 Rosa chinensis HOM05D004739 ORTHO05D005784 0.0e+00 1826.2 903 100.0
FvH4_4g12370 Fragaria vesca HOM05D004739 ORTHO05D005784 0.0e+00 1585.1 956 84.4
FAN12G0062 Fragaria x ananassa HOM05D004739 ORTHO05D005784 0.0e+00 1583.5 922 86.9
FAN07G0434 Fragaria x ananassa HOM05D004739 ORTHO05D005784 0.0e+00 1571.6 922 86.6
FAN12G0551 Fragaria x ananassa HOM05D004739 ORTHO05D005784 0.0e+00 1568.1 956 83.9
FAN22G0233 Fragaria x ananassa HOM05D004739 ORTHO05D005784 0.0e+00 1437.2 922 80.8
Duzib212G0770 Durio zibethinus HOM05D004739 ORTHO05D005784 0.0e+00 1189.9 953 64.5
GSVIVG01031656001 Vitis vinifera HOM05D004739 ORTHO05D005784 0.0e+00 1183.7 955 65.0
QL06p027729 Quercus lobata HOM05D004739 ORTHO05D005784 0.0e+00 1169.5 1000 62.3
TAR365G0018 Trochodendron aralioides HOM05D004739 ORTHO05D005784 0.0e+00 1166.8 971 62.9
Gorai.005G127900 Gossypium raimondii HOM05D004739 ORTHO05D005784 0.0e+00 1159.8 949 63.4
COL.COLO4_08079 Corchorus olitorius HOM05D004739 ORTHO05D005784 0.0e+00 1158.7 1001 61.1
Ciclev10004261m.g Citrus clementina HOM05D004739 ORTHO05D005784 0.0e+00 1153.3 935 64.1
CANSAT78G1796 Cannabis sativa HOM05D004739 ORTHO05D005784 0.0e+00 1150.2 975 62.1
Thecc.04G186700 Theobroma cacao HOM05D004739 ORTHO05D005784 0.0e+00 1139.4 887 65.7
MELO3C022216.2 Cucumis melo HOM05D004739 ORTHO05D005784 0.0e+00 1137.5 948 61.3
CsaV3_5G040440 Cucumis sativus L. HOM05D004739 ORTHO05D005784 0.0e+00 1132.9 949 60.9
Potri.002G233800 Populus trichocarpa HOM05D004739 ORTHO05D005784 0.0e+00 1130.9 1005 60.8
Manes.05G194701 Manihot esculenta HOM05D004739 ORTHO05D005784 0.0e+00 1126.3 948 63.4
Sabra02G0178500 Salix brachista HOM05D004739 ORTHO05D005784 0.0e+00 1115.9 1008 59.6
Gohir.D02G113000 Gossypium hirsutum HOM05D004739 ORTHO05D005784 0.0e+00 1113.2 949 61.9
Lalb_Chr10g0092061 Lupinus albus HOM05D004739 ORTHO05D005784 0.0e+00 1113.2 937 61.6
Eucgr.H00464 Eucalyptus grandis HOM05D004739 ORTHO05D005784 0.0e+00 1112.4 967 60.5
TWI73G0948 Tripterygium wilfordii HOM05D004739 ORTHO05D005784 0.0e+00 1111.7 913 62.1
CSS0046373 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 0.0e+00 1094.3 950 61.1
Lj6A353T83 Lonicera japonica HOM05D004739 ORTHO05D005784 0.0e+00 1087.0 980 59.5
Sed0003398 Sechium edule HOM05D004739 ORTHO05D005784 0.0e+00 1084.3 922 61.4
Psat3g188160 Pisum sativum HOM05D004739 ORTHO05D005784 0.0e+00 1083.9 924 60.9
AUR62021147 Chenopodium quinoa HOM05D004739 ORTHO05D005784 0.0e+00 1081.6 967 58.2
arahy.Tifrunner.gnm1.ann1.F9LJYJ Arachis hypogaea HOM05D004739 ORTHO05D005784 0.0e+00 1080.9 878 62.6
Aqoxy2G04008 Aquilegia oxysepala HOM05D004739 ORTHO05D005784 0.0e+00 1080.5 945 58.9
Medtr7g022220 Medicago truncatula HOM05D004739 ORTHO05D005784 0.0e+00 1075.8 938 59.4
vmacro15619 Vaccinium macrocarpon HOM05D004739 ORTHO05D005784 8.0e-310 1067.0 922 60.6
Ah.07g206800 Amaranthus hybridus HOM05D004739 ORTHO05D005784 1.2e-308 1063.1 970 58.2
Hma1.2p1_1286F.1_g273220 Hydrangea macrophylla HOM05D004739 ORTHO05D005784 4.8e-307 1057.7 742 70.6
Sc13g0008930 Simmondsia chinensis HOM05D004739 ORTHO05D005784 1.3e-304 1049.7 985 57.4
THA.LOC104805833 Tarenaya hassleriana HOM05D004739 ORTHO05D005784 1.9e-303 1045.8 936 59.7
HanXRQChr07g0204631 Helianthus annuus HOM05D004739 ORTHO05D005784 3.2e-303 1045.0 934 58.6
Lj1g0022138 Lotus japonicus HOM05D004739 ORTHO05D005784 5.5e-303 1044.3 969 57.0
MSTRG.24599 Avicennia marina HOM05D004739 ORTHO05D005784 4.7e-302 1041.2 950 58.1
Phvul.008G017600 Phaseolus vulgaris HOM05D004739 ORTHO05D005784 1.4e-301 1039.6 933 58.7
arahy.Tifrunner.gnm1.ann1.WHDV72 Arachis hypogaea HOM05D004739 ORTHO05D005784 4.4e-300 1034.6 878 60.8
Glyma.18G283900 Glycine max HOM05D004739 ORTHO05D005784 5.7e-300 1034.2 935 58.2
Actinidia38940 Actinidia chinensis HOM05D004739 ORTHO05D005784 7.5e-300 1033.9 924 60.2
AUR62031390 Chenopodium quinoa HOM05D004739 ORTHO05D005784 7.5e-300 1033.9 974 56.0
Lj6C358T14 Lonicera japonica HOM05D004739 ORTHO05D005784 1.1e-298 1030.0 894 61.1
Hund11729 Selenicereus undatus HOM05D004739 ORTHO05D005784 1.1e-298 1030.0 984 56.1
Lsat_1_v5_gn_1_69581 Lactuca sativa HOM05D004739 ORTHO05D005784 5.9e-297 1024.2 950 57.5
SalBow3G0652 Salvia bowleyana HOM05D004739 ORTHO05D005784 8.6e-296 1020.4 944 57.0
ECA248G0146 Erigeron canadensis HOM05D004739 ORTHO05D005784 1.9e-295 1019.2 952 56.9
PSO017G5363 Papaver somniferum HOM05D004739 ORTHO05D005784 2.8e-294 1015.4 968 56.1
Migut.N00187 Erythranthe guttata HOM05D004739 ORTHO05D005784 8.9e-293 1010.4 901 58.5
DCAR_023801 Daucus carota HOM05D004739 ORTHO05D005784 2.0e-292 1009.2 946 56.3
PSO675G2609 Papaver somniferum HOM05D004739 ORTHO05D005784 1.3e-291 1006.5 967 55.8
Sopen09g036290 Solanum pennellii HOM05D004739 ORTHO05D005784 4.1e-290 1001.5 999 54.9
Cc03_g10760 Coffea canephora HOM05D004739 ORTHO05D005784 1.0e-288 996.9 756 65.9
Prupe.1G176700 Prunus persica HOM05D004739 ORTHO05D005784 1.3e-288 996.5 738 72.5
Solyc09g098370.4 Solanum lycopersicum HOM05D004739 ORTHO05D005784 1.7e-288 996.1 998 54.4
Peaxi162Scf00286g00338 Petunia axillaris HOM05D004739 ORTHO05D005784 6.6e-288 994.2 998 54.2
VMungo1383G1195 Vigna mungo HOM05D004739 ORTHO05D005784 9.5e-287 990.3 931 56.5
AL1G54960 Arabidopsis lyrata HOM05D004739 ORTHO05D005784 8.9e-285 983.8 903 58.4
BolC8t47324H Brassica oleracea HOM05D004739 ORTHO05D005784 7.5e-284 980.7 917 57.5
ClCG08G000320 Citrullus lanatus HOM05D004739 ORTHO05D005784 9.8e-284 980.3 683 70.0
Sp1g35310 Schrenkiella parvula HOM05D004739 ORTHO05D005784 6.4e-283 977.6 918 57.3
BcaC07g37141 Brassica carinata HOM05D004739 ORTHO05D005784 1.4e-282 976.5 934 56.6
C08p05140 Brassica napus HOM05D004739 ORTHO05D005784 3.2e-282 975.3 918 57.1
PGR142G4233 Punica granatum HOM05D004739 ORTHO05D005784 3.5e-281 971.8 939 55.8
Carub.0001s3748 Capsella rubella HOM05D004739 ORTHO05D005784 4.6e-281 971.5 918 57.5
A08p04770 Brassica napus HOM05D004739 ORTHO05D005784 1.2e-278 963.4 916 56.3
Thhalv10011221m.g Eutrema salsugineum HOM05D004739 ORTHO05D005784 1.6e-278 963.0 938 56.6
Aa31LG10G5400 Aethionema arabicum HOM05D004739 ORTHO05D005784 3.6e-278 961.8 919 56.7
Nitab4.5_0007057g0010 Nicotiana tabacum HOM05D004739 ORTHO05D005784 1.4e-277 959.9 1008 52.8
ATR1145G086 Amborella trichopoda HOM05D004739 ORTHO05D005784 5.2e-277 958.0 976 51.3
BraA08t32506Z Brassica rapa HOM05D004739 ORTHO05D005784 5.8e-276 954.5 971 54.3
SGA_v2.0_scaffold550G52871 Striga asiatica HOM05D004739 ORTHO05D005784 2.5e-271 939.1 978 53.8
Oeu006039.1 Olea europaea HOM05D004739 ORTHO05D005784 4.3e-271 938.3 924 55.3
CiPaw.01G109700 Carya illinoinensis HOM05D004739 ORTHO05D005784 3.4e-268 928.7 810 61.1
Cpa.g.sc8.308 Carica papaya HOM05D004739 ORTHO05D005784 4.4e-268 928.3 968 53.4
EL10Ac3g05589 Beta vulgaris HOM05D004739 ORTHO05D005784 7.5e-268 927.5 891 56.6
HPP92_024268 Vanilla planifolia HOM05D004739 ORTHO05D005784 1.8e-261 906.4 947 52.5
Os06g0171800 Oryza sativa ssp. japonica HOM05D004739 ORTHO05D005784 1.2e-260 903.7 962 49.7
Nitab4.5_0008073g0020 Nicotiana tabacum HOM05D004739 ORTHO05D005784 2.2e-259 899.4 987 51.1
Rhsim02G0071300 Rhododendron simsii HOM05D004739 ORTHO05D005784 1.3e-256 890.2 896 55.4
Zm00001eb375390 Zea mays HOM05D004739 ORTHO05D005784 1.5e-252 876.7 937 50.5
Ca_07125_v3 Cicer arietinum L. HOM05D004739 ORTHO05D005784 4.3e-247 858.6 695 61.4
HPP92_024254 Vanilla planifolia HOM05D004739 ORTHO05D005784 2.4e-242 842.8 942 50.0
BcaB04g17436 Brassica carinata HOM05D004739 ORTHO05D005784 3.5e-233 812.4 907 50.2
MD09G1250400 Malus domestica HOM05D004739 ORTHO05D005784 4.9e-227 792.0 482 82.6
Hma1.2p1_1286F.1_g273230 Hydrangea macrophylla HOM05D004739 ORTHO05D005784 2.5e-226 789.6 527 75.1
MBI11_g12232_MAGBIO Magnolia biondii HOM05D004739 ORTHO05D005784 4.8e-222 775.4 567 66.8
CAN.G710.49 Capsicum annuum HOM05D004739 ORTHO05D005784 9.4e-218 761.1 553 68.2
AT1G48360 Arabidopsis thaliana HOM05D004739 ORTHO05D005784 1.0e-216 757.7 772 54.5
Gohir.A03G095900 Gossypium hirsutum HOM05D004739 ORTHO05D005784 2.5e-215 753.1 730 57.1
CDE02G3320 Ceratophyllum demersum HOM05D004739 ORTHO05D005784 5.9e-212 741.9 956 45.0
Atru.BG.162.p Acer truncatum HOM05D004739 ORTHO05D005784 1.4e-208 730.7 459 78.2
Mapoly0005s0042 Marchantia polymorpha HOM05D004739 ORTHO05D005784 5.5e-186 655.6 847 42.4
AagrBONN_evm.TU.Sc2ySwM_344.4128 Anthoceros agrestis HOM05D004739 ORTHO05D002352 7.2e-186 655.2 1041 39.0
Pp3c5_2670 Physcomitrium patens HOM05D004739 ORTHO05D005784 1.5e-183 647.5 820 43.4
SMO203G0018 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 2.8e-182 643.3 925 41.3
SEGI_11980 Sequoiadendron giganteum HOM05D004739 ORTHO05D005784 1.5e-167 594.3 603 52.1
SMO331G0089 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 3.7e-166 589.7 715 45.3
SMO327G0027 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.2e-161 574.7 829 40.9
unitig_8.g4743 Utricularia gibba HOM05D004739 ORTHO05D003440 3.6e-161 573.2 997 38.1
SMO327G0004 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.4e-149 534.6 784 41.5
MD00G1163900 Malus domestica HOM05D004739 ORTHO05D005784 2.4e-149 533.9 280 90.0
Dinv31047 Davidia involucrata HOM05D004739 ORTHO05D005784 5.1e-147 526.2 442 62.4
Dinv31053 Davidia involucrata HOM05D004739 ORTHO05D005784 5.1e-147 526.2 442 62.4
SMO110G0012 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.2e-143 515.0 916 36.5
TPR.G22177 Trifolium pratense HOM05D004739 ORTHO05D005784 4.2e-141 506.5 313 76.0
SMO331G0087 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.9e-138 497.7 477 52.4
CARHR037970 Cardamine hirsuta HOM05D004739 ORTHO05D005784 1.4e-133 481.5 591 48.2
SMO327G0008 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.6e-132 478.0 721 40.2
SMO110G0011 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 2.1e-124 451.1 619 42.3
Glyma.08G259832 Glycine max HOM05D004739 ORTHO05D005784 9.6e-122 442.2 359 63.0
Dinv31052 Davidia involucrata HOM05D004739 ORTHO05D005784 9.3e-117 425.6 478 50.6
MD09G1250200 Malus domestica HOM05D004739 ORTHO05D005784 2.5e-114 417.5 393 59.0
TAR365G0620 Trochodendron aralioides HOM05D004739 ORTHO05D005784 2.6e-103 380.9 439 49.7
CSS0028447 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 2.2e-102 377.9 315 64.1
SMO252G0014 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.4e-101 375.2 830 32.3
TPR.G2930 Trifolium pratense HOM05D004739 ORTHO05D005784 5.3e-96 356.7 361 53.2
SMO110G0002 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 3.4e-95 354.0 735 34.1
SHI06489 Sapria himalayana HOM05D004739 ORTHO05D000023 8.5e-94 349.4 449 45.4
SMO331G0064 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 3.9e-91 340.5 850 31.9
Cre16.g660350 Chlamydomonas reinhardtii HOM05D004739 ORTHO05D005784 1.8e-80 305.1 432 40.7
PRCOL_00003987 Prasinoderma coloniale HOM05D004739 ORTHO05D005784 2.9e-78 297.7 647 32.1
PGSC0003DMG400021624 Solanum tuberosum HOM05D004739 ORTHO05D005784 2.6e-74 284.6 160 81.2
CBR_g39432 Chara braunii HOM05D004739 ORTHO05D005784 6.1e-68 263.5 270 49.6
Haze_11712 Corylus avellana HOM05D004739 ORTHO05D005784 2.0e-66 258.5 139 84.9
FAN17G2248 Fragaria x ananassa HOM05D004739 ORTHO05D005784 3.6e-60 237.7 180 69.4
CAN.G710.48 Capsicum annuum HOM05D003943 ORTHO05D004753 4.3e-53 214.2 400 35.0
SMO252G0017 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 2.8e-52 211.5 191 54.5
Cfa022531 Carpinus fangiana HOM05D004739 ORTHO05D121730 1.8e-51 208.8 716 27.2
Cfa015247 Carpinus fangiana HOM05D004739 ORTHO05D005784 7.0e-48 196.8 109 89.0
TPR.G2943 Trifolium pratense HOM05D004739 ORTHO05D005784 6.0e-47 193.7 171 60.2
SMO331G0063 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.5e-45 189.1 159 55.3
SEGI_19061 Sequoiadendron giganteum HOM05D004739 ORTHO05D005784 6.8e-43 180.3 543 28.5
Lj6A353T82 Lonicera japonica HOM05D004739 ORTHO05D005784 7.5e-42 176.8 105 82.9
CSS0043638 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 2.4e-40 171.8 214 49.1
MCO01G753 Micromonas commoda HOM05D004739 ORTHO05D005784 2.7e-39 168.3 344 33.1
Actinidia34750 Actinidia chinensis HOM05D004739 ORTHO05D005784 3.5e-39 167.9 153 61.4
CBR_g7993 Chara braunii HOM05D004739 ORTHO05D005784 2.1e-36 158.7 269 32.3
SMO331G0066 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.4e-32 146.0 615 25.2
ClCG08G000310 Citrullus lanatus HOM05D004739 ORTHO05D005784 7.1e-32 143.7 253 42.7
Glyma.16G127800 Glycine max HOM05D004739 ORTHO05D005784 1.0e-30 139.8 89 70.8
Lj6P350T22 Lonicera japonica HOM05D004739 ORTHO05D005784 1.1e-29 136.3 134 53.0
Glyma.08G259766 Glycine max HOM05D004739 ORTHO05D005784 1.9e-29 135.6 107 56.1
Zm00001eb188740 Zea mays HOM05D004739 ORTHO05D005784 4.0e-27 127.9 84 70.2
Zm00001eb188730 Zea mays HOM05D004739 ORTHO05D005784 5.8e-26 124.0 86 67.4
CSS0002286 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 3.8e-25 121.3 83 78.3
CAN.G1076.10 Capsicum annuum HOM05D004739 ORTHO05D005784 1.9e-21 109.0 84 65.5
CSS0015609 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 1.3e-17 96.3 167 39.5
BolC1t05400H Brassica oleracea HOM05D000493 ORTHO05D001355 4.6e-15 87.8 64 64.1
Cc03_g10750 Coffea canephora HOM05D004739 ORTHO05D005784 1.1e-13 83.2 96 52.1
Lj6P352T60 Lonicera japonica HOM05D004739 ORTHO05D005784 8.4e-09 67.0 77 46.8
SMO110G0004 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.1e-08 66.6 86 43.0
Prupe.1G176800 Prunus persica HOM05D000257 ORTHO05D009310 2.4e-08 65.5 120 37.5
EL10Ac3g05590 Beta vulgaris HOM05D004739 ORTHO05D005784 1.8e-06 59.3 101 39.6


User provided reference genes

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