Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0410221 Rosa chinensis HOM05D001260 ORTHO05D004134 3.5e-100 368.2 179 100.0
RcHm_v2.0_Chr1g0368661 Rosa chinensis HOM05D001260 ORTHO05D004134 5.9e-47 191.4 179 61.5
FAN03G2667 Fragaria x ananassa HOM05D001260 ORTHO05D004134 3.8e-46 188.7 185 58.9
FvH4_7g23510 Fragaria vesca HOM05D001260 ORTHO05D004134 6.5e-46 188.0 185 58.9
FAN06G3528 Fragaria x ananassa HOM05D001260 ORTHO05D004134 6.5e-46 188.0 185 58.9
FAN06G4376 Fragaria x ananassa HOM05D001260 ORTHO05D004134 6.5e-46 188.0 185 58.9
FAN10G0370 Fragaria x ananassa HOM05D001260 ORTHO05D004134 8.5e-46 187.6 185 58.4
FAN01G0960 Fragaria x ananassa HOM05D001260 ORTHO05D004134 1.4e-45 186.8 185 58.4
Prupe.2G241200 Prunus persica HOM05D001260 ORTHO05D004134 2.7e-44 182.6 179 58.7
CANSAT56G4350 Cannabis sativa HOM05D001260 ORTHO05D004134 1.8e-43 179.9 179 57.5
MD01G1140700 Malus domestica HOM05D001260 ORTHO05D004134 8.8e-43 177.6 179 57.5
Manes.10G022400 Manihot esculenta HOM05D001260 ORTHO05D004134 8.8e-43 177.6 179 56.4
CiPaw.01G292400 Carya illinoinensis HOM05D001260 ORTHO05D004134 1.1e-42 177.2 179 57.0
MD07G1205000 Malus domestica HOM05D001260 ORTHO05D004134 2.5e-42 176.0 179 57.5
Atru.chr12.295 Acer truncatum HOM05D001260 ORTHO05D004134 4.3e-42 175.3 179 56.4
Atru.chr12.334 Acer truncatum HOM05D001260 ORTHO05D004134 4.3e-42 175.3 179 56.4
arahy.Tifrunner.gnm1.ann1.1DVI41 Arachis hypogaea HOM05D001260 ORTHO05D004134 7.4e-42 174.5 179 56.4
QL08p061745 Quercus lobata HOM05D001260 ORTHO05D004134 9.7e-42 174.1 179 55.9
TWI63G0278 Tripterygium wilfordii HOM05D001260 ORTHO05D004134 9.7e-42 174.1 179 55.3
arahy.Tifrunner.gnm1.ann1.TM7LMJ Arachis hypogaea HOM05D001260 ORTHO05D004134 1.3e-41 173.7 178 56.7
Potri.008G060700 Populus trichocarpa HOM05D001260 ORTHO05D004134 1.7e-41 173.3 179 56.4
Sabra08G0044800 Salix brachista HOM05D001260 ORTHO05D004134 1.7e-41 173.3 179 56.4
Haze_17132 Corylus avellana HOM05D001260 ORTHO05D004134 3.7e-41 172.2 179 55.3
Cpa.g.sc19.263 Carica papaya HOM05D001260 ORTHO05D004134 8.2e-41 171.0 179 55.9
Rhsim03G0137000 Rhododendron simsii HOM05D001260 ORTHO05D004134 1.1e-40 170.6 179 55.3
TAR636G2673 Trochodendron aralioides HOM05D001260 ORTHO05D004134 1.4e-40 170.2 179 54.7
GSVIVG01016463001 Vitis vinifera HOM05D001260 ORTHO05D004134 1.4e-40 170.2 179 54.7
COL.COLO4_25532 Corchorus olitorius HOM05D001260 ORTHO05D004134 1.8e-40 169.9 179 54.2
Hma1.2p1_0039F.1_g024740 Hydrangea macrophylla HOM05D001260 ORTHO05D004134 1.8e-40 169.9 189 53.4
Lalb_Chr17g0346411 Lupinus albus HOM05D001260 ORTHO05D004134 2.4e-40 169.5 179 56.4
Dinv16267 Davidia involucrata HOM05D001260 ORTHO05D004134 3.1e-40 169.1 179 54.2
TWI38G0285 Tripterygium wilfordii HOM05D001260 ORTHO05D004134 3.1e-40 169.1 179 54.2
Eucgr.J02123 Eucalyptus grandis HOM05D001260 ORTHO05D004134 4.1e-40 168.7 179 53.6
CSS0048341 Camellia sinensis var. sinensis HOM05D001260 ORTHO05D004134 5.3e-40 168.3 179 54.7
Duzib114G0845 Durio zibethinus HOM05D001260 ORTHO05D004134 5.3e-40 168.3 182 54.9
vmacro07027 Vaccinium macrocarpon HOM05D001260 ORTHO05D004134 5.3e-40 168.3 182 55.5
Ca_05847_v3 Cicer arietinum L. HOM05D001260 ORTHO05D004134 6.9e-40 167.9 179 55.3
Thecc.10G033200 Theobroma cacao HOM05D001260 ORTHO05D004134 6.9e-40 167.9 178 55.1
Gorai.009G320000 Gossypium raimondii HOM05D001260 ORTHO05D004134 1.2e-39 167.2 179 53.6
Gohir.A10G224000 Gossypium hirsutum HOM05D001260 ORTHO05D004134 1.5e-39 166.8 179 54.2
LjContig00141g0022758 Lotus japonicus HOM05D001260 ORTHO05D004134 1.5e-39 166.8 179 53.6
Glyma.14G065300 Glycine max HOM05D001260 ORTHO05D004134 2.0e-39 166.4 179 54.7
Gohir.D10G237000 Gossypium hirsutum HOM05D001260 ORTHO05D004134 2.0e-39 166.4 179 54.2
Gorai.011G270700 Gossypium raimondii HOM05D001260 ORTHO05D004134 2.0e-39 166.4 182 53.3
PGR044G1255 Punica granatum HOM05D001260 ORTHO05D004134 2.0e-39 166.4 184 52.2
Glyma.02G251500 Glycine max HOM05D001260 ORTHO05D004134 2.6e-39 166.0 179 54.2
VMungo0647G2094 Vigna mungo HOM05D001260 ORTHO05D004134 3.4e-39 165.6 179 54.2
Gohir.A05G302400 Gossypium hirsutum HOM05D001260 ORTHO05D004134 4.5e-39 165.2 179 53.1
Gohir.D05G301900 Gossypium hirsutum HOM05D001260 ORTHO05D004134 4.5e-39 165.2 179 53.1
Potri.010G197700 Populus trichocarpa HOM05D001260 ORTHO05D004134 4.5e-39 165.2 185 53.0
Sc05g0005760 Simmondsia chinensis HOM05D001260 ORTHO05D004134 5.9e-39 164.9 182 53.8
TAR369G0466 Trochodendron aralioides HOM05D001260 ORTHO05D004134 7.7e-39 164.5 179 53.1
Medtr5g081240 Medicago truncatula HOM05D001260 ORTHO05D004134 1.0e-38 164.1 179 54.2
Nn2g13504 Nelumbo nucifera HOM05D001260 ORTHO05D004134 1.0e-38 164.1 179 53.1
Phvul.008G230000 Phaseolus vulgaris HOM05D001260 ORTHO05D004134 1.0e-38 164.1 179 53.1
Lalb_Chr04g0250961 Lupinus albus HOM05D001260 ORTHO05D004134 1.3e-38 163.7 179 55.3
Lalb_Chr10g0104791 Lupinus albus HOM05D001260 ORTHO05D004134 1.3e-38 163.7 184 51.6
CsaV3_6G001430 Cucumis sativus L. HOM05D001260 ORTHO05D004134 1.7e-38 163.3 184 50.5
AUR62002609 Chenopodium quinoa HOM05D001260 ORTHO05D004134 2.2e-38 162.9 188 52.1
Cc02_g07290 Coffea canephora HOM05D001260 ORTHO05D004134 3.8e-38 162.2 189 52.4
Psat7g258880 Pisum sativum HOM05D001260 ORTHO05D004134 3.8e-38 162.2 179 53.1
ClCG11G006570 Citrullus lanatus HOM05D001260 ORTHO05D004134 6.5e-38 161.4 184 51.1
Nitab4.5_0000779g0070 Nicotiana tabacum HOM05D001260 ORTHO05D004134 6.5e-38 161.4 179 52.0
MELO3C008247.2 Cucumis melo HOM05D001260 ORTHO05D004134 8.5e-38 161.0 184 50.5
Lsat_1_v5_gn_8_14640 Lactuca sativa HOM05D001260 ORTHO05D004134 8.5e-38 161.0 179 51.4
GSVIVG01008874001 Vitis vinifera HOM05D001260 ORTHO05D004134 8.5e-38 161.0 189 50.8
ATR0559G059 Amborella trichopoda HOM05D001260 ORTHO05D004134 1.4e-37 160.2 182 50.0
Nitab4.5_0004474g0060 Nicotiana tabacum HOM05D001260 ORTHO05D004134 1.9e-37 159.8 179 51.4
AUR62030032 Chenopodium quinoa HOM05D001260 ORTHO05D004134 2.5e-37 159.5 188 52.1
ECA233G1462 Erigeron canadensis HOM05D001260 ORTHO05D004134 4.2e-37 158.7 189 50.8
Solyc03g079920.3 Solanum lycopersicum HOM05D001260 ORTHO05D004134 5.5e-37 158.3 180 51.1
Sopen03g027210 Solanum pennellii HOM05D001260 ORTHO05D004134 5.5e-37 158.3 180 51.1
HanXRQChr08g0221231 Helianthus annuus HOM05D001260 ORTHO05D004134 7.2e-37 157.9 179 50.8
Peaxi162Scf00611g00324 Petunia axillaris HOM05D001260 ORTHO05D004134 1.6e-36 156.8 179 50.8
PGSC0003DMG400021693 Solanum tuberosum HOM05D001260 ORTHO05D004134 1.6e-36 156.8 179 50.8
Sed0007578 Sechium edule HOM05D001260 ORTHO05D004134 2.1e-36 156.4 184 50.5
MBI04_g44160_MAGBIO Magnolia biondii HOM05D001260 ORTHO05D004134 2.7e-36 156.0 179 51.4
Sed0004245 Sechium edule HOM05D001260 ORTHO05D004134 3.6e-36 155.6 184 48.9
Oeu039009.1 Olea europaea HOM05D001260 ORTHO05D004134 6.1e-36 154.8 189 51.3
Ciclev10033559m.g Citrus clementina HOM05D001260 ORTHO05D004134 2.3e-35 152.9 180 51.7
PSO384G2594 Papaver somniferum HOM05D001260 ORTHO05D004134 3.0e-35 152.5 189 49.7
PSO339G0232 Papaver somniferum HOM05D001260 ORTHO05D004134 5.1e-35 151.8 189 48.7
MSTRG.259 Avicennia marina HOM05D001260 ORTHO05D004134 6.7e-35 151.4 189 49.2
Peaxi162Scf01064g00257 Petunia axillaris HOM05D001260 ORTHO05D004134 1.5e-34 150.2 177 50.8
Lj8A76T111 Lonicera japonica HOM05D001260 ORTHO05D004134 3.3e-34 149.1 214 45.8
Ciclev10030832m.g Citrus clementina HOM05D001260 ORTHO05D004134 4.4e-34 148.7 180 51.1
vmacro10208 Vaccinium macrocarpon HOM05D001260 ORTHO05D004134 4.4e-34 148.7 199 45.2
Os09g0267500 Oryza sativa ssp. japonica HOM05D001260 ORTHO05D004134 7.4e-34 147.9 180 48.3
Sp6g36920 Schrenkiella parvula HOM05D001260 ORTHO05D004134 7.4e-34 147.9 179 48.0
Migut.F00740 Erythranthe guttata HOM05D001260 ORTHO05D004134 1.3e-33 147.1 189 49.7
AT5G05970 Arabidopsis thaliana HOM05D001260 ORTHO05D004134 1.7e-33 146.7 178 49.4
CARHR207240 Cardamine hirsuta HOM05D001260 ORTHO05D004134 1.7e-33 146.7 179 47.5
Thhalv10012734m.g Eutrema salsugineum HOM05D001260 ORTHO05D004134 2.2e-33 146.4 179 47.5
Aa31LG11G7010 Aethionema arabicum HOM05D001260 ORTHO05D004134 2.8e-33 146.0 189 47.1
SEGI_35518 Sequoiadendron giganteum HOM05D001260 ORTHO05D004134 3.7e-33 145.6 180 47.2
Oeu001521.1 Olea europaea HOM05D001260 ORTHO05D004134 6.3e-33 144.8 189 48.1
BcaNung07355 Brassica carinata HOM05D001260 ORTHO05D004134 1.1e-32 144.1 179 46.9
CDE01G0546 Ceratophyllum demersum HOM05D001260 ORTHO05D004134 1.1e-32 144.1 179 48.0
Sp3g09610 Schrenkiella parvula HOM05D001260 ORTHO05D004134 1.1e-32 144.1 179 46.9
SGA_v2.0_scaffold221G42704 Striga asiatica HOM05D001260 ORTHO05D004134 1.1e-32 144.1 181 48.1
Aqoxy1G00447 Aquilegia oxysepala HOM05D001260 ORTHO05D004134 1.4e-32 143.7 179 49.7
AL6G15910 Arabidopsis lyrata HOM05D001260 ORTHO05D004134 1.4e-32 143.7 178 47.8
A05p38010 Brassica napus HOM05D001260 ORTHO05D004134 1.4e-32 143.7 179 46.9
C05p56770 Brassica napus HOM05D001260 ORTHO05D004134 1.4e-32 143.7 179 46.9
BolC5t34341H Brassica oleracea HOM05D001260 ORTHO05D004134 1.4e-32 143.7 179 46.9
BraA05t22592Z Brassica rapa HOM05D001260 ORTHO05D004134 1.4e-32 143.7 179 46.9
Ah.13g074360 Amaranthus hybridus HOM05D001260 ORTHO05D004134 2.4e-32 142.9 190 48.9
SGA_v2.0_scaffold2G01050 Striga asiatica HOM05D001260 ORTHO05D004134 2.4e-32 142.9 186 48.9
Thhalv10020101m.g Eutrema salsugineum HOM05D001260 ORTHO05D004134 3.1e-32 142.5 179 47.5
Carub.0006s0486 Capsella rubella HOM05D001260 ORTHO05D004134 5.3e-32 141.7 176 47.7
THA.LOC104826868 Tarenaya hassleriana HOM05D001260 ORTHO05D004134 7.0e-32 141.4 181 45.9
BcaB06g25631 Brassica carinata HOM05D001260 ORTHO05D004134 9.1e-32 141.0 179 46.4
THA.LOC104816577 Tarenaya hassleriana HOM05D001260 ORTHO05D004134 2.6e-31 139.4 179 45.3
BcaNung06227 Brassica carinata HOM05D001260 ORTHO05D004134 5.9e-31 138.3 178 45.5
AagrBONN_evm.TU.Sc2ySwM_344.891 Anthoceros agrestis HOM05D001260 ORTHO05D004134 1.3e-30 137.1 177 45.8
Pp3c3_3110 Physcomitrium patens HOM05D001260 ORTHO05D004134 2.9e-30 136.0 178 44.4
EL10Ac3g06309 Beta vulgaris HOM05D001260 ORTHO05D004134 6.5e-30 134.8 243 39.5
Pp3c26_11450 Physcomitrium patens HOM05D001260 ORTHO05D004134 1.5e-29 133.7 178 43.8
BraA10t45077Z Brassica rapa HOM05D001260 ORTHO05D004134 1.9e-29 133.3 179 44.1
SEGI_05272 Sequoiadendron giganteum HOM05D001260 ORTHO05D004134 1.9e-29 133.3 180 44.4
C09p70820 Brassica napus HOM05D001260 ORTHO05D004134 3.2e-29 132.5 178 43.8
BolC9t59841H Brassica oleracea HOM05D001260 ORTHO05D004134 3.2e-29 132.5 178 43.8
SalBow6G0807 Salvia bowleyana HOM05D001260 ORTHO05D004134 3.2e-29 132.5 179 44.1
A10p30380 Brassica napus HOM05D001260 ORTHO05D004134 5.5e-29 131.7 178 43.8
Mapoly0118s0019 Marchantia polymorpha HOM05D001260 ORTHO05D004134 5.5e-29 131.7 179 44.1
Pp3c13_5000 Physcomitrium patens HOM05D001260 ORTHO05D004134 5.5e-29 131.7 178 43.3
Hund12217 Selenicereus undatus HOM05D001260 ORTHO05D004134 5.5e-29 131.7 174 46.6
SalBow6G1429 Salvia bowleyana HOM05D001260 ORTHO05D004134 7.2e-29 131.3 179 44.1
Manes.07G121400 Manihot esculenta HOM05D001260 ORTHO05D004134 9.4e-29 131.0 188 41.0
DCAR_011747 Daucus carota HOM05D001260 ORTHO05D004134 1.2e-28 130.6 179 46.4
SMO271G0180 Selaginella moellendorffii HOM05D001260 ORTHO05D004134 6.1e-28 128.3 173 42.8
Pp3c4_30600 Physcomitrium patens HOM05D001260 ORTHO05D004134 5.2e-27 125.2 178 42.1
Oeu031370.1 Olea europaea HOM05D001260 ORTHO05D004134 3.5e-23 112.5 181 43.6
SMO169G0008 Selaginella moellendorffii HOM05D001260 ORTHO05D004134 2.7e-20 102.8 177 38.4
unitig_37.g12012 Utricularia gibba HOM05D001260 ORTHO05D004134 1.2e-18 97.4 177 36.7
TPR.G1704 Trifolium pratense HOM05D001260 ORTHO05D004134 1.7e-17 93.6 127 45.7
TPR.G35592 Trifolium pratense HOM05D001260 ORTHO05D004134 2.8e-17 92.8 64 70.3
Actinidia02910 Actinidia chinensis HOM05D001260 ORTHO05D004134 6.3e-17 91.7 70 64.3
Gohir.D10G236616 Gossypium hirsutum HOM05D001260 ORTHO05D004134 8.3e-17 91.3 63 73.0
Zm00001eb095480 Zea mays HOM05D001260 ORTHO05D004134 1.1e-16 90.9 132 42.4
CDE04G3718 Ceratophyllum demersum HOM05D001260 ORTHO05D004134 1.5e-13 80.5 143 36.4
Sabra10G0152200 Salix brachista HOM05D001260 ORTHO05D004134 4.7e-12 75.5 128 42.2
Psat0s5953g0080 Pisum sativum HOM05D001390 ORTHO05D015037 1.0e-11 74.3 59 61.0
Psat2g096440 Pisum sativum HOM05D001260 ORTHO05D004134 8.8e-11 71.2 61 59.0
Psat2g096560 Pisum sativum HOM05D001260 ORTHO05D004134 2.0e-10 70.1 57 61.4
CAN.G986.45 Capsicum annuum HOM05D001260 ORTHO05D004134 7.5e-10 68.2 49 67.3
Psat0s3732g0040 Pisum sativum HOM05D001061 ORTHO05D007103 7.5e-10 68.2 62 56.5
HPP92_020547 Vanilla planifolia HOM05D001260 ORTHO05D004134 4.9e-09 65.5 49 67.3
CAN.G115.2 Capsicum annuum HOM05D001260 ORTHO05D004134 1.4e-08 63.9 49 63.3
CBR_g37200 Chara braunii HOM05D001260 ORTHO05D004134 1.4e-08 63.9 188 29.3
Gohir.D10G236300 Gossypium hirsutum HOM05D001260 ORTHO05D004134 5.4e-08 62.0 117 36.8
Rhsim08G0019500 Rhododendron simsii HOM05D001260 ORTHO05D004134 2.9e-06 56.2 25 96.0
Rhsim08G0019400 Rhododendron simsii HOM05D006674 ORTHO05D007954 5.0e-06 55.5 128 39.1


User provided reference genes

Program Settings