Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0404661 Rosa chinensis HOM05D003406 ORTHO05D004026 7.9e-161 570.9 399 100.0
RcHm_v2.0_Chr3g0486211 Rosa chinensis HOM05D003406 ORTHO05D004026 5.1e-75 285.8 280 88.9
FAN26G1924 Fragaria x ananassa HOM05D003406 ORTHO05D004026 2.6e-71 273.5 433 67.0
FAN09G0535 Fragaria x ananassa HOM05D003406 ORTHO05D004026 3.8e-70 269.6 420 58.6
FAN14G5538 Fragaria x ananassa HOM05D003406 ORTHO05D004026 2.1e-68 263.8 413 40.9
RcHm_v2.0_Chr5g0010661 Rosa chinensis HOM05D003406 ORTHO05D004026 1.0e-67 261.5 436 66.1
FAN28G2604 Fragaria x ananassa HOM05D003406 ORTHO05D004026 2.7e-60 236.9 435 63.7
FvH4_5g25490 Fragaria vesca HOM05D003406 ORTHO05D004026 1.8e-59 234.2 410 65.6
FvH4_5g25550 Fragaria vesca HOM05D003406 ORTHO05D004026 1.8e-59 234.2 410 65.6
FAN13G0969 Fragaria x ananassa HOM05D003406 ORTHO05D004026 2.3e-59 233.8 410 65.4
FvH4_6g22190 Fragaria vesca HOM05D003406 ORTHO05D004026 3.9e-59 233.0 327 41.6
FAN18G4486 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.1e-58 231.5 410 65.4
FAN19G0629 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.6e-57 227.6 428 63.3
RcHm_v2.0_Chr3g0482981 Rosa chinensis HOM05D003406 ORTHO05D004026 2.1e-57 227.3 355 72.7
RcHm_v2.0_Chr3g0482821 Rosa chinensis HOM05D003406 ORTHO05D004026 3.7e-57 226.5 347 73.8
FAN06G4607 Fragaria x ananassa HOM05D003406 ORTHO05D004026 6.9e-56 222.2 441 48.5
Peaxi162Scf00341g00714 Petunia axillaris HOM05D003406 ORTHO05D004026 5.1e-51 206.1 396 54.8
unitig_26.g9605 Utricularia gibba HOM05D003406 ORTHO05D004026 4.3e-50 203.0 421 41.3
Actinidia10165 Actinidia chinensis HOM05D003406 ORTHO05D004026 4.5e-47 193.0 404 34.7
FvH4_7g02880 Fragaria vesca HOM05D003406 ORTHO05D004026 1.7e-46 191.0 438 61.2
FAN03G3378 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.9e-45 187.6 438 61.0
RcHm_v2.0_Chr1g0323831 Rosa chinensis HOM05D003406 ORTHO05D004026 2.5e-45 187.2 433 61.2
Sabra01G0019600 Salix brachista HOM05D003406 ORTHO05D004026 9.4e-45 185.3 478 39.5
FAN23G2061 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.2e-44 184.9 291 47.8
Dinv09276 Davidia involucrata HOM05D003406 ORTHO05D004026 2.1e-44 184.1 426 33.1
AUR62037187 Chenopodium quinoa HOM05D003406 ORTHO05D004026 2.3e-43 180.6 420 59.0
Prupe.2G034300 Prunus persica HOM05D003406 ORTHO05D004026 3.0e-43 180.3 438 59.8
MD07G1038200 Malus domestica HOM05D003406 ORTHO05D004026 8.2e-41 172.2 435 58.9
FAN06G0645 Fragaria x ananassa HOM05D003406 ORTHO05D004026 3.1e-40 170.2 365 54.5
arahy.Tifrunner.gnm1.ann1.07MYST Arachis hypogaea HOM05D003406 ORTHO05D004026 6.9e-40 169.1 411 48.9
Ciclev10004445m.g Citrus clementina HOM05D003406 ORTHO05D004026 1.2e-39 168.3 433 57.7
MD02G1288700 Malus domestica HOM05D003406 ORTHO05D004026 1.5e-39 167.9 441 44.2
FAN11G1841 Fragaria x ananassa HOM05D003406 ORTHO05D004026 2.0e-39 167.5 362 50.8
Atru.chr12.1360 Acer truncatum HOM05D003406 ORTHO05D004026 7.7e-39 165.6 427 57.6
FAN16G0123 Fragaria x ananassa HOM05D003406 ORTHO05D004026 2.2e-38 164.1 367 48.2
SGA_v2.0_scaffold124G33625 Striga asiatica HOM05D003406 ORTHO05D004026 2.2e-38 164.1 432 48.1
FAN16G0070 Fragaria x ananassa HOM05D003406 ORTHO05D004026 2.9e-38 163.7 295 60.3
AagrBONN_evm.TU.Sc2ySwM_369.461 Anthoceros agrestis HOM05D003406 ORTHO05D004026 5.0e-38 162.9 395 41.5
Duzib114G0281 Durio zibethinus HOM05D003406 ORTHO05D004026 6.5e-38 162.5 410 53.4
GSVIVG01013527001 Vitis vinifera HOM05D003406 ORTHO05D004026 6.5e-38 162.5 432 58.1
Thecc.10G162300 Theobroma cacao HOM05D003406 ORTHO05D004026 8.5e-38 162.2 422 58.5
Actinidia06245 Actinidia chinensis HOM05D003406 ORTHO05D004026 1.4e-37 161.4 425 57.9
Hund13347 Selenicereus undatus HOM05D003406 ORTHO05D004026 1.4e-37 161.4 436 56.2
CiPaw.14G007200 Carya illinoinensis HOM05D003406 ORTHO05D004026 2.5e-37 160.6 423 57.7
Eucgr.G03238 Eucalyptus grandis HOM05D003406 ORTHO05D004026 2.5e-37 160.6 423 58.4
CANSAT25G0328 Cannabis sativa HOM05D003406 ORTHO05D004026 4.2e-37 159.8 442 56.8
Manes.11G004700 Manihot esculenta HOM05D003406 ORTHO05D004026 5.5e-37 159.5 415 58.8
Cc00_g06910 Coffea canephora HOM05D003406 ORTHO05D004026 9.4e-37 158.7 429 57.3
Dinv32032 Davidia involucrata HOM05D003406 ORTHO05D004026 1.2e-36 158.3 422 58.1
Potri.001G026800 Populus trichocarpa HOM05D003406 ORTHO05D004026 1.6e-36 157.9 425 57.4
QL04p014603 Quercus lobata HOM05D003406 ORTHO05D004026 1.6e-36 157.9 415 58.8
QL04p014965 Quercus lobata HOM05D003406 ORTHO05D004026 1.6e-36 157.9 415 58.8
Cfa010885 Carpinus fangiana HOM05D003406 ORTHO05D004026 2.7e-36 157.1 400 60.0
PGR031G1802 Punica granatum HOM05D003406 ORTHO05D004026 2.7e-36 157.1 434 56.5
Gorai.011G213900 Gossypium raimondii HOM05D003406 ORTHO05D004026 6.1e-36 156.0 418 58.4
Gohir.A10G183800 Gossypium hirsutum HOM05D003406 ORTHO05D004026 1.0e-35 155.2 418 58.4
Gohir.D10G190800 Gossypium hirsutum HOM05D003406 ORTHO05D004026 1.0e-35 155.2 418 58.4
CiPaw.13G012800 Carya illinoinensis HOM05D003406 ORTHO05D004026 1.4e-35 154.8 415 58.6
Nn7g36639 Nelumbo nucifera HOM05D003406 ORTHO05D004026 1.8e-35 154.5 426 56.3
FAN19G1643 Fragaria x ananassa HOM05D003406 ORTHO05D004026 3.0e-35 153.7 365 41.4
Duzib106G0689 Durio zibethinus HOM05D003406 ORTHO05D004026 3.9e-35 153.3 400 59.8
Sed0018149 Sechium edule HOM05D003406 ORTHO05D004026 3.9e-35 153.3 424 57.3
AT5G13480 Arabidopsis thaliana HOM05D003406 ORTHO05D004026 5.1e-35 152.9 412 58.5
CSS0014544 Camellia sinensis var. sinensis HOM05D003406 ORTHO05D004026 5.1e-35 152.9 411 58.4
THA.LOC104826724 Tarenaya hassleriana HOM05D003406 ORTHO05D004026 5.1e-35 152.9 425 56.7
MELO3C005161.2 Cucumis melo HOM05D003406 ORTHO05D004026 6.7e-35 152.5 424 57.3
FAN09G3514 Fragaria x ananassa HOM05D003406 ORTHO05D004026 6.7e-35 152.5 363 52.6
AL6G24100 Arabidopsis lyrata HOM05D003406 ORTHO05D004026 2.0e-34 151.0 412 58.0
THA.LOC104819128 Tarenaya hassleriana HOM05D003406 ORTHO05D004026 2.0e-34 151.0 425 56.5
CsaV3_5G024420 Cucumis sativus L. HOM05D003406 ORTHO05D004026 3.3e-34 150.2 424 57.1
TAR369G0157 Trochodendron aralioides HOM05D003406 ORTHO05D004026 3.3e-34 150.2 419 57.5
Hma1.2p1_1396F.1_g280640 Hydrangea macrophylla HOM05D003406 ORTHO05D004026 4.4e-34 149.8 382 51.0
PSO561G0002 Papaver somniferum HOM05D003406 ORTHO05D004026 5.7e-34 149.4 435 55.9
TWI63G0701 Tripterygium wilfordii HOM05D003406 ORTHO05D004026 9.7e-34 148.7 427 56.7
EL10Ac2g02817 Beta vulgaris HOM05D003406 ORTHO05D004026 1.3e-33 148.3 415 57.8
Haze_03074 Corylus avellana HOM05D003406 ORTHO05D004026 1.3e-33 148.3 395 59.5
FAN27G1752 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.3e-33 148.3 288 59.0
PSO063G0746 Papaver somniferum HOM05D003406 ORTHO05D004026 1.7e-33 147.9 429 56.6
Potri.003G197900 Populus trichocarpa HOM05D003406 ORTHO05D004026 2.2e-33 147.5 404 58.2
ECA248G2072 Erigeron canadensis HOM05D003406 ORTHO05D004026 2.8e-33 147.1 435 56.1
BcaB01g05356 Brassica carinata HOM05D003406 ORTHO05D004026 4.8e-33 146.4 430 56.7
Carub.0006s1164 Capsella rubella HOM05D003406 ORTHO05D004026 4.8e-33 146.4 390 60.3
Aqoxy4G02704 Aquilegia oxysepala HOM05D003406 ORTHO05D004026 6.3e-33 146.0 433 56.4
A03p06010 Brassica napus HOM05D003406 ORTHO05D004026 6.3e-33 146.0 432 56.7
Potri.T125206 Populus trichocarpa HOM05D003406 ORTHO05D004026 6.3e-33 146.0 404 57.9
AUR62026878 Chenopodium quinoa HOM05D003406 ORTHO05D004026 1.1e-32 145.2 395 59.0
Lalb_Chr19g0132381 Lupinus albus HOM05D003406 ORTHO05D004026 2.4e-32 144.1 439 55.1
Glyma.13G198200 Glycine max HOM05D003406 ORTHO05D004026 4.1e-32 143.3 433 55.4
CDE04G3459 Ceratophyllum demersum HOM05D003406 ORTHO05D004026 7.0e-32 142.5 257 63.8
Zm00001eb140970 Zea mays HOM05D003406 ORTHO05D004026 7.0e-32 142.5 412 56.1
Thhalv10012890m.g Eutrema salsugineum HOM05D003406 ORTHO05D004026 1.6e-31 141.4 431 55.9
Manes.04G160100 Manihot esculenta HOM05D003406 ORTHO05D004026 2.0e-31 141.0 106 61.3
HPP92_025009 Vanilla planifolia HOM05D003406 ORTHO05D004026 2.6e-31 140.6 435 55.6
Lj7A583T43 Lonicera japonica HOM05D003406 ORTHO05D004026 4.5e-31 139.8 104 62.5
Ca_23943_v3 Cicer arietinum L. HOM05D003406 ORTHO05D004026 5.9e-31 139.4 414 57.5
Lalb_Chr01g0007801 Lupinus albus HOM05D003406 ORTHO05D004026 5.9e-31 139.4 431 55.0
Psat4g192120 Pisum sativum HOM05D003406 ORTHO05D004026 5.9e-31 139.4 433 54.5
C03p07050 Brassica napus HOM05D003406 ORTHO05D004026 7.7e-31 139.0 432 56.2
Sc14g0005750 Simmondsia chinensis HOM05D003406 ORTHO05D004026 1.3e-30 138.3 426 54.7
Lsat_1_v5_gn_1_115021 Lactuca sativa HOM05D003406 ORTHO05D004026 2.2e-30 137.5 419 56.6
Phvul.011G207400 Phaseolus vulgaris HOM05D003406 ORTHO05D004026 6.5e-30 136.0 413 56.2
MBI02_g23406_MAGBIO Magnolia biondii HOM05D003406 ORTHO05D004026 1.5e-29 134.8 106 59.4
BraA03t09938Z Brassica rapa HOM05D003406 ORTHO05D004026 2.5e-29 134.0 454 54.2
SalBow5G0382 Salvia bowleyana HOM05D003406 ORTHO05D004026 7.2e-29 132.5 421 55.8
SalBow5G3900 Salvia bowleyana HOM05D003406 ORTHO05D004026 7.2e-29 132.5 421 55.8
MSTRG.16987 Avicennia marina HOM05D003406 ORTHO05D004026 1.2e-28 131.7 410 56.3
Migut.B01223 Erythranthe guttata HOM05D003406 ORTHO05D004026 1.2e-28 131.7 111 57.7
Glyma.15G236500 Glycine max HOM05D003406 ORTHO05D004026 3.6e-28 130.2 407 56.3
ATR0745G072 Amborella trichopoda HOM05D003406 ORTHO05D004026 4.7e-28 129.8 417 55.9
BolC3t13203H Brassica oleracea HOM05D003406 ORTHO05D004026 4.7e-28 129.8 445 40.2
MCO04G412 Micromonas commoda HOM05D003406 ORTHO05D004026 6.1e-28 129.4 356 45.8
arahy.Tifrunner.gnm1.ann1.P8HZNX Arachis hypogaea HOM05D003406 ORTHO05D004026 1.4e-27 128.3 110 55.5
VMungo1127G0085 Vigna mungo HOM05D003406 ORTHO05D004026 2.3e-27 127.5 110 56.4
Mapoly0029s0111 Marchantia polymorpha HOM05D003406 ORTHO05D004026 3.0e-27 127.1 393 57.8
HanXRQChr01g0004511 Helianthus annuus HOM05D003406 ORTHO05D004026 5.2e-27 126.3 420 55.2
Lj3g0018542 Lotus japonicus HOM05D003406 ORTHO05D004026 5.2e-27 126.3 110 56.4
CARHR199960 Cardamine hirsuta HOM05D003406 ORTHO05D004026 1.1e-26 125.2 109 56.9
HanXRQChr15g0463071 Helianthus annuus HOM05D003406 ORTHO05D004026 2.0e-26 124.4 420 55.2
ClCG01G007460 Citrullus lanatus HOM05D003406 ORTHO05D004026 7.5e-26 122.5 139 47.5
Sp6g30540 Schrenkiella parvula HOM05D003406 ORTHO05D004026 1.7e-25 121.3 432 53.9
Aqoxy2G01593 Aquilegia oxysepala HOM05D003406 ORTHO05D004026 3.7e-25 120.2 106 55.7
Medtr8g038550 Medicago truncatula HOM05D003406 ORTHO05D004026 1.4e-24 118.2 428 53.7
Rhsim07G0066700 Rhododendron simsii HOM05D003406 ORTHO05D004026 3.1e-24 117.1 151 42.4
CBR_g16799 Chara braunii HOM05D003406 ORTHO05D004026 4.1e-24 116.7 100 53.0
CBR_g22487 Chara braunii HOM05D003406 ORTHO05D004026 4.1e-24 116.7 100 53.0
FAN11G4032 Fragaria x ananassa HOM05D003406 ORTHO05D004026 7.0e-24 115.9 194 42.8
Ah.10g030390 Amaranthus hybridus HOM05D003406 ORTHO05D004026 9.1e-24 115.5 170 41.2
Pp3c16_16500 Physcomitrium patens HOM05D003406 ORTHO05D004026 2.0e-23 114.4 414 54.6
SHI03990 Sapria himalayana HOM05D003406 ORTHO05D004026 3.5e-23 113.6 94 54.3
Nitab4.5_0001669g0120 Nicotiana tabacum HOM05D003406 ORTHO05D004026 8.5e-22 109.0 105 54.3
Nitab4.5_0000151g0240 Nicotiana tabacum HOM05D003406 ORTHO05D004026 1.1e-21 108.6 435 37.9
SMO353G0072 Selaginella moellendorffii HOM05D003406 ORTHO05D004026 1.5e-21 108.2 388 55.2
BcaNung01887 Brassica carinata HOM05D003406 ORTHO05D004026 2.5e-21 107.5 433 53.1
C02p06160 Brassica napus HOM05D003406 ORTHO05D004026 5.5e-21 106.3 393 56.0
A02p01970 Brassica napus HOM05D003406 ORTHO05D004026 7.2e-21 105.9 393 56.2
BolC2t06560H Brassica oleracea HOM05D003406 ORTHO05D004026 7.2e-21 105.9 393 56.0
BraA02t05170Z Brassica rapa HOM05D003406 ORTHO05D004026 9.4e-21 105.5 433 52.7
BcaNung01149 Brassica carinata HOM05D003406 ORTHO05D004026 1.2e-20 105.1 393 55.7
Solyc08g067040.4 Solanum lycopersicum HOM05D003406 ORTHO05D004026 1.2e-20 105.1 421 53.9
Sopen08g020990 Solanum pennellii HOM05D003406 ORTHO05D004026 1.2e-20 105.1 421 53.9
vmacro13749 Vaccinium macrocarpon HOM05D003406 ORTHO05D004026 2.7e-20 104.0 84 58.3
FAN14G3483 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.0e-19 102.1 196 40.8
FAN23G2758 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.4e-19 101.7 193 69.9
Aa31LG11G7380 Aethionema arabicum HOM05D003406 ORTHO05D004026 1.8e-19 101.3 423 51.8
PRCOL_00004312 Prasinoderma coloniale HOM05D003406 ORTHO05D004026 5.2e-19 99.8 318 47.5
AUR62037192 Chenopodium quinoa HOM05D003406 ORTHO05D004026 2.0e-18 97.8 81 58.0
AUR62037193 Chenopodium quinoa HOM05D003406 ORTHO05D015410 3.4e-18 97.1 65 61.5
TPR.G36904 Trifolium pratense HOM05D003406 ORTHO05D004026 1.3e-17 95.1 132 45.5
SEGI_30282 Sequoiadendron giganteum HOM05D003406 ORTHO05D004026 1.7e-17 94.7 87 54.0
PSO782G3285 Papaver somniferum HOM05D003406 ORTHO05D004026 3.7e-17 93.6 111 46.8
TPR.G36971 Trifolium pratense HOM05D003406 ORTHO05D004026 1.8e-16 91.3 110 45.5
SEGI_34701 Sequoiadendron giganteum HOM05D003406 ORTHO05D004026 2.0e-15 87.8 57 66.7
TPR.G24634 Trifolium pratense HOM05D003406 ORTHO05D004026 2.9e-14 84.0 132 42.4
SMO231G0014 Selaginella moellendorffii HOM05D003406 ORTHO05D004026 8.5e-14 82.4 83 50.6
DCAR_031832 Daucus carota HOM05D003406 ORTHO05D004026 1.1e-13 82.0 130 43.1
SHI03989 Sapria himalayana HOM05D003406 ORTHO05D004026 1.9e-13 81.3 97 50.5
Sabra03G0147300 Salix brachista HOM05D003406 ORTHO05D004026 2.1e-12 77.8 160 35.6
ATR0568G096 Amborella trichopoda HOM05D003406 ORTHO05D004026 6.1e-12 76.3 83 49.4
Haze_26561 Corylus avellana HOM05D003406 ORTHO05D004026 6.1e-12 76.3 102 40.2
SEGI_13935 Sequoiadendron giganteum HOM05D003406 ORTHO05D004026 8.0e-12 75.9 99 48.5
Cre06.g251951 Chlamydomonas reinhardtii HOM05D003406 ORTHO05D004026 1.2e-10 72.0 69 43.5
FAN19G2649 Fragaria x ananassa HOM05D003406 ORTHO05D004026 2.8e-09 67.4 38 71.1
SEGI_32752 Sequoiadendron giganteum HOM05D003406 ORTHO05D004026 3.1e-08 63.9 39 66.7
Aa31LG8G12410 Aethionema arabicum HOM05D061913 ORTHO05D030983 7.0e-08 62.8 44 54.5
Os01g0951000 Oryza sativa ssp. japonica HOM05D003406 ORTHO05D004026 1.7e-06 58.2 106 39.6
FAN19G2386 Fragaria x ananassa HOM05D003406 ORTHO05D004026 2.3e-06 57.8 113 42.5


User provided reference genes

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