Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0397601 Rosa chinensis HOM05D005445 ORTHO05D007043 3.9e-179 631.3 318 100.0
FvH4_4g06040 Fragaria vesca HOM05D005445 ORTHO05D007043 4.7e-172 607.8 318 96.2
FAN17G2613 Fragaria x ananassa HOM05D005445 ORTHO05D007043 1.5e-170 602.8 318 95.0
FAN07G1413 Fragaria x ananassa HOM05D005445 ORTHO05D007043 4.0e-163 578.2 318 92.5
Prupe.1G063800 Prunus persica HOM05D005445 ORTHO05D007043 5.2e-147 524.6 324 83.0
MD16G1238000 Malus domestica HOM05D005445 ORTHO05D007043 1.5e-146 523.1 324 82.1
Thecc.09G196900 Theobroma cacao HOM05D005445 ORTHO05D007043 6.1e-140 501.1 324 79.0
Gohir.A08G017100 Gossypium hirsutum HOM05D005445 ORTHO05D007043 1.3e-137 493.4 322 78.6
CiPaw.15G161100 Carya illinoinensis HOM05D005445 ORTHO05D007043 2.4e-136 489.2 324 77.2
GSVIVG01032266001 Vitis vinifera HOM05D005445 ORTHO05D007043 9.2e-136 487.3 322 78.0
Ciclev10008923m.g Citrus clementina HOM05D005445 ORTHO05D007043 1.2e-135 486.9 324 77.5
Glyma.08G027200 Glycine max HOM05D005445 ORTHO05D007043 2.7e-135 485.7 324 77.5
Gohir.D08G027500 Gossypium hirsutum HOM05D005445 ORTHO05D007043 6.0e-135 484.6 322 77.6
Atru.chr7.1013 Acer truncatum HOM05D005445 ORTHO05D007043 8.6e-134 480.7 320 77.5
CANSAT80G1260 Cannabis sativa HOM05D005445 ORTHO05D007043 8.6e-134 480.7 324 76.2
Gorai.004G024500 Gossypium raimondii HOM05D005445 ORTHO05D007043 1.1e-133 480.3 327 76.5
Dinv12613 Davidia involucrata HOM05D005445 ORTHO05D007043 1.9e-133 479.6 324 76.5
QL11p008649 Quercus lobata HOM05D005445 ORTHO05D007043 4.3e-133 478.4 364 70.1
Cpa.g.sc115.19 Carica papaya HOM05D005445 ORTHO05D007043 1.6e-132 476.5 313 78.6
Ca_17431_v3 Cicer arietinum L. HOM05D005445 ORTHO05D007043 2.1e-132 476.1 320 76.9
Ca_17440_v3 Cicer arietinum L. HOM05D005445 ORTHO05D007043 2.1e-132 476.1 320 76.9
Manes.02G221800 Manihot esculenta HOM05D005445 ORTHO05D007043 2.8e-132 475.7 307 77.9
Hma1.2p1_0314F.1_g122070 Hydrangea macrophylla HOM05D005445 ORTHO05D007043 3.1e-131 472.2 323 75.5
Medtr8g101230 Medicago truncatula HOM05D005445 ORTHO05D007043 6.8e-131 471.1 320 76.9
CiPaw.16G104300 Carya illinoinensis HOM05D005445 ORTHO05D007043 1.2e-130 470.3 324 75.3
TPR.G25470 Trifolium pratense HOM05D005445 ORTHO05D007043 2.6e-130 469.2 318 76.4
Psat7g020920 Pisum sativum HOM05D005445 ORTHO05D007043 2.9e-129 465.7 320 75.3
TWI63G1185 Tripterygium wilfordii HOM05D005445 ORTHO05D007043 3.7e-129 465.3 322 75.5
VMungo0251G0086 Vigna mungo HOM05D005445 ORTHO05D007043 8.3e-129 464.2 324 74.7
Glyma.05G220700 Glycine max HOM05D005445 ORTHO05D007043 1.1e-128 463.8 324 75.6
Lalb_Chr09g0332001 Lupinus albus HOM05D005445 ORTHO05D007043 1.4e-128 463.4 321 75.1
TAR383G0382 Trochodendron aralioides HOM05D005445 ORTHO05D007043 3.2e-128 462.2 329 73.3
Lj4g0004845 Lotus japonicus HOM05D005445 ORTHO05D007043 5.4e-128 461.5 320 75.0
Actinidia07565 Actinidia chinensis HOM05D005445 ORTHO05D007043 7.8e-127 457.6 324 73.8
arahy.Tifrunner.gnm1.ann1.HNJF4G Arachis hypogaea HOM05D005445 ORTHO05D007043 1.7e-126 456.4 324 75.0
Duzib168G0912 Durio zibethinus HOM05D005445 ORTHO05D007043 3.0e-126 455.7 337 71.5
Phvul.002G302400 Phaseolus vulgaris HOM05D005445 ORTHO05D007043 3.0e-126 455.7 323 74.6
Cfa020755 Carpinus fangiana HOM05D005445 ORTHO05D007043 5.0e-126 454.9 309 77.0
TAR383G1024 Trochodendron aralioides HOM05D005445 ORTHO05D007043 5.0e-126 454.9 318 74.5
CSS0000968 Camellia sinensis var. sinensis HOM05D005445 ORTHO05D007043 1.1e-125 453.8 325 73.5
Solyc07g017400.3 Solanum lycopersicum HOM05D005445 ORTHO05D007043 2.5e-125 452.6 324 71.6
Sopen07g006100 Solanum pennellii HOM05D005445 ORTHO05D007043 2.5e-125 452.6 324 71.3
Sabra06G0059700 Salix brachista HOM05D005445 ORTHO05D007043 4.0e-123 445.3 323 71.8
Nn8g41135 Nelumbo nucifera HOM05D005445 ORTHO05D007043 1.7e-121 439.9 328 69.8
CAN.G146.2 Capsicum annuum HOM05D005445 ORTHO05D007043 1.4e-120 436.8 324 69.1
Rhsim04G0099700 Rhododendron simsii HOM05D005445 ORTHO05D007043 1.9e-120 436.4 321 70.4
MBI13_g31572_MAGBIO Magnolia biondii HOM05D005445 ORTHO05D007043 1.6e-119 433.3 318 72.0
CsaV3_2G009110 Cucumis sativus L. HOM05D005445 ORTHO05D007043 2.1e-119 433.0 322 71.1
MSTRG.26517 Avicennia marina HOM05D005445 ORTHO05D007043 3.5e-119 432.2 322 68.9
MELO3C003927.2 Cucumis melo HOM05D005445 ORTHO05D007043 3.5e-119 432.2 320 70.6
Aqoxy7G02630 Aquilegia oxysepala HOM05D005445 ORTHO05D007043 4.6e-119 431.8 322 69.6
DCAR_020460 Daucus carota HOM05D005445 ORTHO05D007043 1.3e-118 430.3 318 68.2
ClCG11G011350 Citrullus lanatus HOM05D005445 ORTHO05D007043 1.7e-118 429.9 321 71.3
arahy.Tifrunner.gnm1.ann1.K4ERET Arachis hypogaea HOM05D005445 ORTHO05D007043 6.6e-118 427.9 365 66.6
Duzib170G0675 Durio zibethinus HOM05D005445 ORTHO05D007043 6.6e-118 427.9 323 69.0
SGA_v2.0_scaffold485G52365 Striga asiatica HOM05D005445 ORTHO05D007043 8.6e-118 427.6 323 67.8
Nitab4.5_0000899g0030 Nicotiana tabacum HOM05D005445 ORTHO05D007043 2.5e-117 426.0 314 69.4
Nitab4.5_0004036g0030 Nicotiana tabacum HOM05D005445 ORTHO05D007043 3.3e-117 425.6 309 70.9
Potri.006G078800 Populus trichocarpa HOM05D005445 ORTHO05D007043 3.3e-117 425.6 320 69.7
Cc00_g00070 Coffea canephora HOM05D005445 ORTHO05D007043 7.3e-117 424.5 324 67.3
Eucgr.C00062 Eucalyptus grandis HOM05D005445 ORTHO05D007043 1.8e-115 419.9 310 70.0
THA.LOC104815270 Tarenaya hassleriana HOM05D005445 ORTHO05D007043 5.8e-114 414.8 301 69.1
Oeu028820.1 Olea europaea HOM05D005445 ORTHO05D007043 7.6e-114 414.5 301 71.1
Sp4g09300 Schrenkiella parvula HOM05D005445 ORTHO05D007043 9.9e-114 414.1 300 70.0
Hund03231 Selenicereus undatus HOM05D005445 ORTHO05D007043 9.9e-114 414.1 324 66.7
ECA234G2663 Erigeron canadensis HOM05D005445 ORTHO05D007043 1.3e-113 413.7 316 67.7
Sed0003073 Sechium edule HOM05D005445 ORTHO05D007043 2.9e-113 412.5 297 72.1
AT2G26590 Arabidopsis thaliana HOM05D005445 ORTHO05D007043 1.1e-112 410.6 300 70.0
HPP92_028347 Vanilla planifolia HOM05D005445 ORTHO05D007043 2.4e-112 409.5 326 63.5
SalBow5G4362 Salvia bowleyana HOM05D005445 ORTHO05D007043 5.4e-112 408.3 325 67.4
CARHR118490 Cardamine hirsuta HOM05D005445 ORTHO05D007043 1.2e-111 407.1 300 69.3
AL4G19530 Arabidopsis lyrata HOM05D005445 ORTHO05D007043 1.6e-111 406.8 303 69.3
BraA03t11899Z Brassica rapa HOM05D005445 ORTHO05D007043 5.1e-110 401.7 303 66.7
BcaB01g03027 Brassica carinata HOM05D005445 ORTHO05D007043 8.7e-110 401.0 300 68.0
CDE06G0990 Ceratophyllum demersum HOM05D005445 ORTHO05D007043 8.7e-110 401.0 320 65.9
BolC3t15563H Brassica oleracea HOM05D005445 ORTHO05D007043 4.3e-109 398.7 312 65.4
PGR142G0598 Punica granatum HOM05D005445 ORTHO05D007043 4.3e-109 398.7 307 69.7
ATR0626G233 Amborella trichopoda HOM05D005445 ORTHO05D007043 5.6e-109 398.3 329 63.2
Lsat_1_v5_gn_5_80620 Lactuca sativa HOM05D005445 ORTHO05D007043 5.6e-109 398.3 306 68.0
Thhalv10000977m.g Eutrema salsugineum HOM05D005445 ORTHO05D007043 1.6e-108 396.7 297 68.7
BcaC01g04909 Brassica carinata HOM05D005445 ORTHO05D007043 3.6e-108 395.6 300 67.0
Os05g0594800 Oryza sativa ssp. japonica HOM05D005445 ORTHO05D007043 6.2e-108 394.8 305 65.2
Aa31LG5G9140 Aethionema arabicum HOM05D005445 ORTHO05D007043 1.4e-107 393.7 309 65.0
Thhalv10016855m.g Eutrema salsugineum HOM05D005445 ORTHO05D007043 1.8e-107 393.3 282 72.0
C03p32210 Brassica napus HOM05D005445 ORTHO05D007043 3.1e-107 392.5 300 66.3
Carub.0004s0844 Capsella rubella HOM05D005445 ORTHO05D007043 7.6e-106 387.9 299 65.6
A03p26880 Brassica napus HOM05D005445 ORTHO05D007043 1.7e-105 386.7 303 65.0
PSO170G6081 Papaver somniferum HOM05D005445 ORTHO05D007043 2.9e-105 386.0 318 63.5
HanXRQChr10g0309531 Helianthus annuus HOM05D005445 ORTHO05D007043 4.9e-105 385.2 294 68.0
PSO063G4940 Papaver somniferum HOM05D005445 ORTHO05D007043 8.4e-105 384.4 318 62.9
Migut.L01918 Erythranthe guttata HOM05D005445 ORTHO05D007043 3.5e-103 379.0 300 66.3
Zm00001eb297230 Zea mays HOM05D005445 ORTHO05D007043 8.7e-102 374.4 318 61.9
Ah.10g032730 Amaranthus hybridus HOM05D005445 ORTHO05D007043 3.6e-100 369.0 319 61.1
AUR62027984 Chenopodium quinoa HOM05D005445 ORTHO05D007043 2.9e-97 359.4 351 57.8
Lj5C772G2 Lonicera japonica HOM05D005445 ORTHO05D007043 2.9e-97 359.4 272 68.8
EL10Ac2g03624 Beta vulgaris HOM05D005445 ORTHO05D007043 3.2e-96 355.9 348 57.5
unitig_85.g27245 Utricularia gibba HOM05D005445 ORTHO05D007043 4.6e-95 352.1 297 62.3
Peaxi162Scf01184g00140 Petunia axillaris HOM05D005445 ORTHO05D007043 1.8e-94 350.1 341 55.1
AUR62020729 Chenopodium quinoa HOM05D005445 ORTHO05D007043 4.3e-93 345.5 319 58.6
vmacro20760 Vaccinium macrocarpon HOM05D005445 ORTHO05D007043 8.1e-92 341.3 378 51.9
SEGI_14233 Sequoiadendron giganteum HOM05D005445 ORTHO05D007043 1.4e-91 340.5 307 57.3
Lalb_Chr05g0223811 Lupinus albus HOM05D005445 ORTHO05D007043 3.2e-88 329.3 244 71.3
Dinv26479 Davidia involucrata HOM05D005445 ORTHO05D007043 1.7e-81 307.0 224 74.1
Hma1.2p1_0314F.1_g122080 Hydrangea macrophylla HOM05D005445 ORTHO05D007043 1.9e-77 293.5 221 71.5
Dinv00323 Davidia involucrata HOM05D005445 ORTHO05D007043 1.8e-70 270.4 197 75.1
Pp3c21_370 Physcomitrium patens HOM05D005445 ORTHO05D007043 5.1e-70 268.9 325 46.2
Sc14g0007060 Simmondsia chinensis HOM05D005445 ORTHO05D007043 4.8e-68 262.3 225 61.3
SMO116G0379 Selaginella moellendorffii HOM05D005445 ORTHO05D007043 1.6e-63 247.3 304 46.4
COL.COLO4_23410 Corchorus olitorius HOM05D005445 ORTHO05D007043 7.9e-63 245.0 153 78.4
Mapoly0011s0124 Marchantia polymorpha HOM05D005445 ORTHO05D007043 3.7e-60 236.1 314 43.6
CDE02G2220 Ceratophyllum demersum HOM05D005445 ORTHO05D007043 2.4e-59 233.4 228 58.8
Haze_19097 Corylus avellana HOM05D005445 ORTHO05D007043 1.2e-58 231.1 207 64.3
CBR_g28055 Chara braunii HOM05D005445 ORTHO05D007043 1.1e-56 224.6 356 40.7
MD13G1232400 Malus domestica HOM05D005445 ORTHO05D007043 1.4e-38 164.5 175 58.9
Sc14g0006300 Simmondsia chinensis HOM05D005445 ORTHO05D007043 1.7e-36 157.5 121 65.3
vmacro10242 Vaccinium macrocarpon HOM05D002150 ORTHO05D002191 8.9e-30 135.2 92 72.8
MCO02G027 Micromonas commoda HOM05D005445 ORTHO05D007043 2.6e-29 133.7 355 28.7
HPP92_015797 Vanilla planifolia HOM05D005445 ORTHO05D007043 2.6e-29 133.7 296 33.1
vmacro07726 Vaccinium macrocarpon HOM05D005445 ORTHO05D007043 4.4e-29 132.9 91 72.5
C03p32230 Brassica napus HOM05D005445 ORTHO05D007043 1.3e-28 131.3 90 72.2
BolC3t15564H Brassica oleracea HOM05D005445 ORTHO05D007043 1.3e-28 131.3 90 72.2
Lalb_Chr05g0223801 Lupinus albus HOM05D005445 ORTHO05D007043 1.2e-23 114.8 68 82.4
Cre11.g469450 Chlamydomonas reinhardtii HOM05D005445 ORTHO05D007043 8.9e-22 108.6 341 26.4
HanXRQChr09g0242991 Helianthus annuus HOM05D005445 ORTHO05D007043 2.0e-18 97.4 78 66.7
SHI03135 Sapria himalayana HOM05D005445 ORTHO05D007043 2.7e-18 97.1 52 86.5
SGA_v2.0_scaffold21G09605 Striga asiatica HOM05D005445 ORTHO05D007043 1.6e-15 87.8 91 52.7
HanXRQChr09g0242981 Helianthus annuus HOM05D005445 ORTHO05D007043 4.7e-15 86.3 82 61.0
HanXRQChr13g0395691 Helianthus annuus HOM05D005445 ORTHO05D007043 4.7e-15 86.3 82 61.0
HanXRQChr09g0248391 Helianthus annuus HOM05D005445 ORTHO05D007043 1.4e-14 84.7 82 59.8
vmacro04822 Vaccinium macrocarpon HOM05D005445 ORTHO05D007043 1.5e-13 81.3 43 86.0
HanXRQChr09g0246171 Helianthus annuus HOM05D005445 ORTHO05D007043 2.0e-13 80.9 79 59.5
Potri.003G027722 Populus trichocarpa HOM05D005445 ORTHO05D007043 1.9e-11 74.3 64 59.4
Potri.003G027520 Populus trichocarpa HOM05D005445 ORTHO05D007043 1.9e-08 64.3 58 63.8
TPR.G25462 Trifolium pratense HOM05D000254 ORTHO05D000165 5.2e-06 56.2 117 35.0


User provided reference genes

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