Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0395211 Rosa chinensis HOM05D000813 ORTHO05D000995 4.8e-42 174.1 88 100.0
RcHm_v2.0_Chr2g0165801 Rosa chinensis HOM05D000813 ORTHO05D000995 1.5e-11 72.8 101 47.5
AL5G19620 Arabidopsis lyrata HOM05D000813 ORTHO05D000995 2.8e-10 68.6 75 56.0
AT3G29575 Arabidopsis thaliana HOM05D000813 ORTHO05D000995 2.8e-10 68.6 75 56.0
FAN02G1607 Fragaria x ananassa HOM05D000622 ORTHO05D000475 2.8e-10 68.6 104 45.2
Ca_04361_v3 Cicer arietinum L. HOM05D000813 ORTHO05D000995 4.8e-10 67.8 125 40.0
FvH4_6g46820 Fragaria vesca HOM05D000813 ORTHO05D000995 6.3e-10 67.4 104 44.2
FAN09G3399 Fragaria x ananassa HOM05D000813 ORTHO05D000995 6.3e-10 67.4 104 44.2
Carub.0005s0817 Capsella rubella HOM05D000813 ORTHO05D000995 8.2e-10 67.0 91 48.4
Duzib187G1930 Durio zibethinus HOM05D000813 ORTHO05D000995 8.2e-10 67.0 95 45.3
FAN05G0037 Fragaria x ananassa HOM05D000813 ORTHO05D000995 8.2e-10 67.0 105 43.8
MD17G1060200 Malus domestica HOM05D000813 ORTHO05D000995 1.1e-09 66.6 100 46.0
CANSAT64G0091 Cannabis sativa HOM05D000813 ORTHO05D000995 1.4e-09 66.2 98 44.9
COL.COLO4_04939 Corchorus olitorius HOM05D000813 ORTHO05D000995 1.4e-09 66.2 92 47.8
Phvul.008G032900 Phaseolus vulgaris HOM05D000813 ORTHO05D000995 1.8e-09 65.9 89 44.9
Potri.004G120600 Populus trichocarpa HOM05D000813 ORTHO05D000995 2.4e-09 65.5 94 45.7
Thecc.04G096200 Theobroma cacao HOM05D000813 ORTHO05D000995 3.1e-09 65.1 95 44.2
A02p36660 Brassica napus HOM05D000813 ORTHO05D000995 4.1e-09 64.7 101 46.5
BraA02t08661Z Brassica rapa HOM05D000813 ORTHO05D000995 4.1e-09 64.7 101 46.5
Cpa.g.sc14.182 Carica papaya HOM05D000813 ORTHO05D000995 4.1e-09 64.7 90 45.6
FAN14G3582 Fragaria x ananassa HOM05D000813 ORTHO05D000995 4.1e-09 64.7 104 42.3
MD09G1067200 Malus domestica HOM05D000813 ORTHO05D000995 4.1e-09 64.7 96 45.8
Peaxi162Scf00991g00212 Petunia axillaris HOM05D000813 ORTHO05D000995 4.1e-09 64.7 79 50.6
CiPaw.03G088200 Carya illinoinensis HOM05D000813 ORTHO05D000995 6.9e-09 63.9 92 44.6
Glyma.08G246400 Glycine max HOM05D000813 ORTHO05D000995 6.9e-09 63.9 91 45.1
TWI60G1025 Tripterygium wilfordii HOM05D000813 ORTHO05D000995 6.9e-09 63.9 92 43.5
BcaB04g19513 Brassica carinata HOM05D000813 ORTHO05D000995 1.2e-08 63.2 93 48.4
BcaC04g23839 Brassica carinata HOM05D000813 ORTHO05D000995 1.2e-08 63.2 93 48.4
C09p04280 Brassica napus HOM05D000813 ORTHO05D000995 1.2e-08 63.2 93 48.4
BolC9t53360H Brassica oleracea HOM05D000813 ORTHO05D000995 1.2e-08 63.2 93 48.4
Thhalv10004771m.g Eutrema salsugineum HOM05D000813 ORTHO05D000995 1.2e-08 63.2 75 56.0
QL02p067550 Quercus lobata HOM05D000813 ORTHO05D000995 1.2e-08 63.2 92 45.7
Manes.05G110000 Manihot esculenta HOM05D000813 ORTHO05D000995 1.5e-08 62.8 96 42.7
Dinv34938 Davidia involucrata HOM05D000813 ORTHO05D000995 2.0e-08 62.4 83 50.6
CiPaw.04G055300 Carya illinoinensis HOM05D000813 ORTHO05D000995 3.4e-08 61.6 92 43.5
THA.LOC104805513 Tarenaya hassleriana HOM05D000813 ORTHO05D000995 4.5e-08 61.2 97 44.3
Potri.017G094500 Populus trichocarpa HOM05D000813 ORTHO05D000995 5.9e-08 60.8 90 45.6
TWI32G0800 Tripterygium wilfordii HOM05D000813 ORTHO05D000995 5.9e-08 60.8 92 43.5
Aqoxy3G03681 Aquilegia oxysepala HOM05D000813 ORTHO05D000995 7.7e-08 60.5 89 42.7
A09p04070 Brassica napus HOM05D000813 ORTHO05D000995 1.0e-07 60.1 77 53.2
BraA09t36044Z Brassica rapa HOM05D000813 ORTHO05D000995 1.0e-07 60.1 77 53.2
Sed0003610 Sechium edule HOM05D000813 ORTHO05D000995 1.0e-07 60.1 91 42.9
Sabra17G0083300 Salix brachista HOM05D000813 ORTHO05D000995 1.3e-07 59.7 90 45.6
BcaC06g33694 Brassica carinata HOM05D000813 ORTHO05D000995 1.7e-07 59.3 96 46.9
C07p38280 Brassica napus HOM05D000813 ORTHO05D000995 1.7e-07 59.3 96 46.9
BolC7t44351H Brassica oleracea HOM05D000813 ORTHO05D000995 1.7e-07 59.3 96 46.9
Sp2g18010 Schrenkiella parvula HOM05D000813 ORTHO05D000995 1.7e-07 59.3 92 46.7
Cc11_g11930 Coffea canephora HOM05D000813 ORTHO05D000995 2.2e-07 58.9 90 43.3
Nitab4.5_0013813g0010 Nicotiana tabacum HOM05D000813 ORTHO05D000995 2.9e-07 58.5 94 44.7
Potri.008G096500 Populus trichocarpa HOM05D000813 ORTHO05D000995 2.9e-07 58.5 91 40.7
Sabra08G0072800 Salix brachista HOM05D000813 ORTHO05D000995 2.9e-07 58.5 91 40.7
Aa31LG2G3880 Aethionema arabicum HOM05D000813 ORTHO05D000995 3.8e-07 58.2 96 41.7
Cc07_g04270 Coffea canephora HOM05D000813 ORTHO05D000995 3.8e-07 58.2 94 44.7
Dinv06099 Davidia involucrata HOM05D000813 ORTHO05D000995 3.8e-07 58.2 88 44.3
Dinv33832 Davidia involucrata HOM05D000813 ORTHO05D000995 3.8e-07 58.2 91 46.2
Lj6A778T62 Lonicera japonica HOM05D000813 ORTHO05D000995 3.8e-07 58.2 84 45.2
Oeu048138.1 Olea europaea HOM05D000813 ORTHO05D000995 3.8e-07 58.2 89 42.7
CAN.G707.3 Capsicum annuum HOM05D000813 ORTHO05D000995 6.5e-07 57.4 92 42.4
MBI19_g29612_MAGBIO Magnolia biondii HOM05D000813 ORTHO05D000995 6.5e-07 57.4 89 43.8
Manes.01G027200 Manihot esculenta HOM05D000813 ORTHO05D000995 6.5e-07 57.4 95 41.1
arahy.Tifrunner.gnm1.ann1.12DG6R Arachis hypogaea HOM05D000813 ORTHO05D000995 8.5e-07 57.0 91 42.9
Cfa008875 Carpinus fangiana HOM05D000813 ORTHO05D000995 8.5e-07 57.0 91 41.8
Haze_11901 Corylus avellana HOM05D000813 ORTHO05D004282 8.5e-07 57.0 91 41.8
Eucgr.B03147 Eucalyptus grandis HOM05D000813 ORTHO05D000995 8.5e-07 57.0 95 40.0
Oeu025285.1 Olea europaea HOM05D000813 ORTHO05D000995 8.5e-07 57.0 89 41.6
MELO3C012155.2 Cucumis melo HOM05D000813 ORTHO05D000995 1.1e-06 56.6 91 40.7
CsaV3_5G033350 Cucumis sativus L. HOM05D000813 ORTHO05D000995 1.1e-06 56.6 91 40.7
Oeu004589.1 Olea europaea HOM05D000813 ORTHO05D000995 1.1e-06 56.6 100 38.0
PGR004G2502 Punica granatum HOM05D000813 ORTHO05D000995 1.1e-06 56.6 93 44.1
ClCG05G023690 Citrullus lanatus HOM05D000813 ORTHO05D000995 1.4e-06 56.2 91 40.7
Solyc04g005380.3 Solanum lycopersicum HOM05D000813 ORTHO05D000995 1.4e-06 56.2 100 40.0
GSVIVG01012225001 Vitis vinifera HOM05D000813 ORTHO05D000995 1.4e-06 56.2 90 41.1
Nitab4.5_0000212g0250 Nicotiana tabacum HOM05D000813 ORTHO05D000995 1.9e-06 55.8 100 39.0
Rhsim10G0049900 Rhododendron simsii HOM05D000813 ORTHO05D000995 1.9e-06 55.8 90 41.1
Sabra10G0119700 Salix brachista HOM05D000813 ORTHO05D000995 1.9e-06 55.8 91 39.6
Sed0005447 Sechium edule HOM05D000813 ORTHO05D000995 1.9e-06 55.8 91 40.7
Hund13141 Selenicereus undatus HOM05D000813 ORTHO05D000995 1.9e-06 55.8 81 45.7
Nitab4.5_0002957g0010 Nicotiana tabacum HOM05D000813 ORTHO05D000995 2.5e-06 55.5 95 42.1
Oeu055084.1 Olea europaea HOM05D000813 ORTHO05D000995 2.5e-06 55.5 92 40.2
Solyc05g012210.4 Solanum lycopersicum HOM05D000813 ORTHO05D000995 2.5e-06 55.5 88 43.2
Sopen05g007040 Solanum pennellii HOM05D000813 ORTHO05D000995 2.5e-06 55.5 88 43.2
PGSC0003DMG400001460 Solanum tuberosum HOM05D000813 ORTHO05D000995 2.5e-06 55.5 88 46.6
PGSC0003DMG400028315 Solanum tuberosum HOM05D000813 ORTHO05D000995 2.5e-06 55.5 88 43.2
Haze_14426 Corylus avellana HOM05D000813 ORTHO05D000995 3.2e-06 55.1 88 44.3
Glyma.01G060300 Glycine max HOM05D000813 ORTHO05D000995 3.2e-06 55.1 88 42.0
PGR083G1986 Punica granatum HOM05D000813 ORTHO05D000995 3.2e-06 55.1 85 43.5
Solyc02g088910.3 Solanum lycopersicum HOM05D000813 ORTHO05D000995 3.2e-06 55.1 88 46.6
Sopen02g033600 Solanum pennellii HOM05D000813 ORTHO05D000995 3.2e-06 55.1 88 46.6
SGA_v2.0_scaffold52G19137 Striga asiatica HOM05D000813 ORTHO05D000995 3.2e-06 55.1 94 41.5
MSTRG.7743 Avicennia marina HOM05D000813 ORTHO05D000995 4.2e-06 54.7 93 38.7
Duzib264G0316 Durio zibethinus HOM05D000813 ORTHO05D000995 4.2e-06 54.7 86 41.9
Lsat_1_v5_gn_4_171761 Lactuca sativa HOM05D000813 ORTHO05D000995 4.2e-06 54.7 92 42.4
Nn4g23439 Nelumbo nucifera HOM05D000813 ORTHO05D000995 4.2e-06 54.7 91 41.8
Psat2g131080 Pisum sativum HOM05D000813 ORTHO05D000995 4.2e-06 54.7 92 41.3
Potri.010G157900 Populus trichocarpa HOM05D000813 ORTHO05D000995 4.2e-06 54.7 91 39.6
PGSC0003DMG401017804 Solanum tuberosum HOM05D000813 ORTHO05D000995 4.2e-06 54.7 98 39.8
Actinidia16160 Actinidia chinensis HOM05D000813 ORTHO05D000995 5.5e-06 54.3 93 38.7
Medtr7g013820 Medicago truncatula HOM05D000813 ORTHO05D000995 5.5e-06 54.3 137 34.3
Peaxi162Scf00667g00615 Petunia axillaris HOM05D000813 ORTHO05D000995 5.5e-06 54.3 102 40.2
Sopen04g001370 Solanum pennellii HOM05D000813 ORTHO05D000995 5.5e-06 54.3 99 39.4
TAR371G0632 Trochodendron aralioides HOM05D000813 ORTHO05D000995 5.5e-06 54.3 92 41.3
Atru.chr11.1621 Acer truncatum HOM05D000813 ORTHO05D000995 7.2e-06 53.9 103 36.9
CDE07G1444 Ceratophyllum demersum HOM05D000813 ORTHO05D000995 7.2e-06 53.9 84 41.7
Atru.chr8.426 Acer truncatum HOM05D000813 ORTHO05D000995 9.4e-06 53.5 95 38.9
MSTRG.13450 Avicennia marina HOM05D000813 ORTHO05D000995 9.4e-06 53.5 87 43.7
CAN.G10.17 Capsicum annuum HOM05D000813 ORTHO05D000995 9.4e-06 53.5 94 40.4
Lj4A119G47 Lonicera japonica HOM05D000813 ORTHO05D000995 9.4e-06 53.5 96 39.6
VMungo1383G2800 Vigna mungo HOM05D000813 ORTHO05D000995 9.4e-06 53.5 77 45.5


User provided reference genes

Program Settings