Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0394521 Rosa chinensis HOM05D000001 ORTHO05D347037 8.5e-34 146.4 70 100.0
RcHm_v2.0_Chr2g0124781 Rosa chinensis HOM05D000001 ORTHO05D000003 8.8e-23 109.8 67 73.1
FAN22G0774 Fragaria x ananassa HOM05D000001 ORTHO05D000003 1.8e-20 102.1 68 72.1
RcHm_v2.0_Chr4g0386651 Rosa chinensis HOM05D000001 ORTHO05D026270 1.8e-20 102.1 67 70.1
RcHm_v2.0_Chr3g0482411 Rosa chinensis HOM05D000001 ORTHO05D000003 9.1e-20 99.8 69 71.0
FAN12G1636 Fragaria x ananassa HOM05D000001 ORTHO05D000003 1.2e-19 99.4 68 70.6
FvH4_4g12100 Fragaria vesca HOM05D000001 ORTHO05D000003 1.5e-19 99.0 68 69.1
FAN12G0324 Fragaria x ananassa HOM05D000001 ORTHO05D000003 3.4e-19 97.8 68 69.1
RcHm_v2.0_Chr4g0386511 Rosa chinensis HOM05D000001 ORTHO05D026270 4.5e-19 97.4 67 70.1
RcHm_v2.0_Chr4g0386501 Rosa chinensis HOM05D000001 ORTHO05D346427 2.5e-17 91.7 61 72.1
Prupe.1G018800 Prunus persica HOM05D000001 ORTHO05D000003 3.2e-17 91.3 67 65.7
QL06p001562 Quercus lobata HOM05D000001 ORTHO05D000003 1.4e-15 85.9 67 58.2
Cfa008462 Carpinus fangiana HOM05D000001 ORTHO05D000003 1.8e-15 85.5 67 61.2
GSVIVG01018018001 Vitis vinifera HOM05D000001 ORTHO05D000003 6.7e-15 83.6 67 58.2
Haze_11211 Corylus avellana HOM05D000001 ORTHO05D163995 2.6e-14 81.6 67 56.7
Actinidia08478 Actinidia chinensis HOM05D001769 ORTHO05D001695 4.4e-14 80.9 67 56.7
Dinv14025 Davidia involucrata HOM05D000001 ORTHO05D000003 5.7e-14 80.5 67 58.2
CSS0041055 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D000003 2.8e-13 78.2 67 55.2
MD00G1181600 Malus domestica HOM05D000001 ORTHO05D247010 4.8e-13 77.4 56 71.4
Peaxi162Scf00092g00003 Petunia axillaris HOM05D000001 ORTHO05D000003 4.8e-13 77.4 67 50.7
Eucgr.B01053 Eucalyptus grandis HOM05D000001 ORTHO05D000003 6.3e-13 77.0 64 57.8
CANSAT56G3818 Cannabis sativa HOM05D000001 ORTHO05D000003 8.2e-13 76.6 64 59.4
Sopen09g031310 Solanum pennellii HOM05D000001 ORTHO05D000003 8.2e-13 76.6 67 53.7
MSTRG.4048 Avicennia marina HOM05D000001 ORTHO05D000003 1.1e-12 76.3 67 52.2
Glyma.11G007200 Glycine max HOM05D000001 ORTHO05D000003 1.1e-12 76.3 67 53.7
Phvul.002G043500 Phaseolus vulgaris HOM05D000001 ORTHO05D000003 1.8e-12 75.5 67 53.7
Ciclev10004307m.g Citrus clementina HOM05D000001 ORTHO05D000003 2.4e-12 75.1 67 52.2
PGSC0003DMG400032268 Solanum tuberosum HOM05D000001 ORTHO05D000003 2.4e-12 75.1 67 52.2
Thecc.04G236000 Theobroma cacao HOM05D000001 ORTHO05D000003 2.4e-12 75.1 67 53.7
TWI09G0671 Tripterygium wilfordii HOM05D000001 ORTHO05D000003 2.4e-12 75.1 67 55.2
arahy.Tifrunner.gnm1.ann1.U9TVSZ Arachis hypogaea HOM05D000001 ORTHO05D000003 4.1e-12 74.3 67 53.7
CiPaw.01G197600 Carya illinoinensis HOM05D000001 ORTHO05D000003 5.3e-12 73.9 67 50.7
PGR142G2842 Punica granatum HOM05D000001 ORTHO05D000003 5.3e-12 73.9 67 52.2
TAR365G0450 Trochodendron aralioides HOM05D000001 ORTHO05D000003 5.3e-12 73.9 67 53.7
Nitab4.5_0000085g0340 Nicotiana tabacum HOM05D000001 ORTHO05D000003 7.0e-12 73.6 67 47.8
Solyc09g082450.1 Solanum lycopersicum HOM05D000001 ORTHO05D000003 7.0e-12 73.6 67 50.7
Nitab4.5_0001547g0020 Nicotiana tabacum HOM05D000001 ORTHO05D000003 1.2e-11 72.8 67 46.3
COL.COLO4_21527 Corchorus olitorius HOM05D000001 ORTHO05D000003 1.6e-11 72.4 67 52.2
Glyma.01G236000 Glycine max HOM05D000001 ORTHO05D000003 2.0e-11 72.0 67 52.2
Gohir.A10G118300 Gossypium hirsutum HOM05D000001 ORTHO05D000003 3.5e-11 71.2 67 50.7
Rhsim02G0027300 Rhododendron simsii HOM05D000001 ORTHO05D000003 3.5e-11 71.2 67 49.3
VMungo1215G1810 Vigna mungo HOM05D000001 ORTHO05D000003 3.5e-11 71.2 67 52.2
LjContig00408g0004438 Lotus japonicus HOM05D000001 ORTHO05D000003 4.5e-11 70.9 67 52.2
Aa31LG9G17590 Aethionema arabicum HOM05D000001 ORTHO05D000003 5.9e-11 70.5 67 50.7
Lalb_Chr16g0376441 Lupinus albus HOM05D000001 ORTHO05D000003 5.9e-11 70.5 67 49.3
Gohir.D10G148400 Gossypium hirsutum HOM05D000001 ORTHO05D000003 7.7e-11 70.1 67 50.7
Gorai.011G165700 Gossypium raimondii HOM05D000001 ORTHO05D000003 7.7e-11 70.1 67 50.7
Oeu043473.1 Olea europaea HOM05D000001 ORTHO05D000003 7.7e-11 70.1 67 47.8
Ca_24411_v3 Cicer arietinum L. HOM05D000001 ORTHO05D000003 1.7e-10 68.9 67 49.3
Ca_30961_v3 Cicer arietinum L. HOM05D000001 ORTHO05D000003 1.7e-10 68.9 67 49.3
TPR.G37999 Trifolium pratense HOM05D000001 ORTHO05D000003 1.7e-10 68.9 67 50.7
CAN.G1402.4 Capsicum annuum HOM05D000001 ORTHO05D000003 2.9e-10 68.2 67 47.8
RcHm_v2.0_Chr4g0386751 Rosa chinensis HOM05D000001 ORTHO05D000003 3.8e-10 67.8 67 50.7
MBI11_g32999_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D000003 5.0e-10 67.4 66 51.5
Sed0012658 Sechium edule HOM05D000001 ORTHO05D000003 5.0e-10 67.4 67 49.3
Nn6g34129 Nelumbo nucifera HOM05D000001 ORTHO05D000003 6.5e-10 67.0 67 47.8
SGA_v2.0_scaffold151G36697 Striga asiatica HOM05D000001 ORTHO05D000003 6.5e-10 67.0 67 46.3
Sabra10G0059300 Salix brachista HOM05D000001 ORTHO05D000003 8.5e-10 66.6 67 49.3
CARHR098570 Cardamine hirsuta HOM05D000001 ORTHO05D000003 1.5e-09 65.9 67 47.8
ClCG05G004980 Citrullus lanatus HOM05D000001 ORTHO05D017855 1.5e-09 65.9 67 49.3
Lj6P609T59 Lonicera japonica HOM05D000001 ORTHO05D000003 1.5e-09 65.9 64 48.4
Medtr5g006570 Medicago truncatula HOM05D000001 ORTHO05D000003 1.5e-09 65.9 67 47.8
Potri.010G083700 Populus trichocarpa HOM05D000001 ORTHO05D000003 1.5e-09 65.9 67 49.3
Carub.0003s2285 Capsella rubella HOM05D000001 ORTHO05D000003 5.5e-09 63.9 67 46.3
Sp3g20450 Schrenkiella parvula HOM05D000001 ORTHO05D000003 5.5e-09 63.9 67 46.3
AT3G22690 Arabidopsis thaliana HOM05D000001 ORTHO05D000003 7.2e-09 63.5 67 44.8
Duzib151G0567 Durio zibethinus HOM05D000001 ORTHO05D000003 7.2e-09 63.5 67 47.8
BcaB06g26380 Brassica carinata HOM05D000001 ORTHO05D000003 1.6e-08 62.4 67 46.3
BcaC05g28027 Brassica carinata HOM05D000001 ORTHO05D000003 1.6e-08 62.4 67 46.3
A05p26010 Brassica napus HOM05D000001 ORTHO05D000003 1.6e-08 62.4 67 46.3
C05p40430 Brassica napus HOM05D000001 ORTHO05D000003 1.6e-08 62.4 67 46.3
BolC5t32784H Brassica oleracea HOM05D000001 ORTHO05D000003 1.6e-08 62.4 67 46.3
BraA05t21486Z Brassica rapa HOM05D000001 ORTHO05D000003 1.6e-08 62.4 67 46.3
Thhalv10023310m.g Eutrema salsugineum HOM05D000001 ORTHO05D000003 2.1e-08 62.0 67 41.8
DCAR_030677 Daucus carota HOM05D001769 ORTHO05D000003 3.6e-08 61.2 66 45.5
Thhalv10020066m.g Eutrema salsugineum HOM05D000001 ORTHO05D000003 3.6e-08 61.2 67 47.8
MELO3C006512.2 Cucumis melo HOM05D000001 ORTHO05D000003 8.0e-08 60.1 64 46.9
Migut.G00366 Erythranthe guttata HOM05D000001 ORTHO05D000003 1.0e-07 59.7 64 42.2
RcHm_v2.0_Chr1g0329111 Rosa chinensis HOM05D000001 ORTHO05D342305 1.8e-07 58.9 37 78.4
Thhalv10006495m.g Eutrema salsugineum HOM05D000001 ORTHO05D000003 2.3e-07 58.5 65 44.6
Aqoxy7G01965 Aquilegia oxysepala HOM05D000001 ORTHO05D000003 3.0e-07 58.2 67 41.8
Migut.N00112 Erythranthe guttata HOM05D000001 ORTHO05D000003 3.0e-07 58.2 69 42.0
Aa31LG2G11350 Aethionema arabicum HOM05D000001 ORTHO05D000003 4.0e-07 57.8 67 41.8
Prupe.7G236200 Prunus persica HOM05D000001 ORTHO05D000003 4.0e-07 57.8 67 38.8
AL5G45660 Arabidopsis lyrata HOM05D000001 ORTHO05D000003 5.2e-07 57.4 68 39.7
Carub.0005s2953 Capsella rubella HOM05D000001 ORTHO05D000003 5.2e-07 57.4 65 46.2
RcHm_v2.0_Chr1g0328861 Rosa chinensis HOM05D000001 ORTHO05D345499 6.7e-07 57.0 37 75.7
RcHm_v2.0_Chr4g0387301 Rosa chinensis HOM05D000001 ORTHO05D011532 6.7e-07 57.0 31 87.1
CARHR173150 Cardamine hirsuta HOM05D000001 ORTHO05D024829 8.8e-07 56.6 65 43.1
AL1G66650 Arabidopsis lyrata HOM05D000001 ORTHO05D000003 1.2e-06 56.2 67 40.3
Carub.0002s0720 Capsella rubella HOM05D000001 ORTHO05D000003 1.2e-06 56.2 67 40.3
Lalb_Chr13g0301991 Lupinus albus HOM05D000001 ORTHO05D000003 1.2e-06 56.2 64 39.1
Os09g0474051 Oryza sativa ssp. japonica HOM05D000001 ORTHO05D000003 1.2e-06 56.2 64 42.2
QL02p086985 Quercus lobata HOM05D000001 ORTHO05D000003 1.2e-06 56.2 67 40.3
A09p18930 Brassica napus HOM05D002820 ORTHO05D000003 1.5e-06 55.8 67 40.3
BraA09t37513Z Brassica rapa HOM05D002820 ORTHO05D000003 1.5e-06 55.8 67 40.3
AT3G62890 Arabidopsis thaliana HOM05D000001 ORTHO05D000003 2.0e-06 55.5 68 39.7
Cc04_g04530 Coffea canephora HOM05D000001 ORTHO05D000003 2.6e-06 55.1 69 39.1
VMungo1215G0461 Vigna mungo HOM05D000001 ORTHO05D000003 2.6e-06 55.1 64 35.9
Hma1.2p1_0494F.1_g165200 Hydrangea macrophylla HOM05D000001 ORTHO05D000003 3.3e-06 54.7 64 43.8
Medtr7g074040 Medicago truncatula HOM05D000001 ORTHO05D000003 3.3e-06 54.7 63 42.9
PSO541G0696 Papaver somniferum HOM05D000001 ORTHO05D000003 3.3e-06 54.7 67 37.3
Phvul.003G162300 Phaseolus vulgaris HOM05D000001 ORTHO05D000003 3.3e-06 54.7 64 34.4
Psat6g165360 Pisum sativum HOM05D000001 ORTHO05D000003 3.3e-06 54.7 65 38.5
Potri.018G071800 Populus trichocarpa HOM05D000001 ORTHO05D000003 3.3e-06 54.7 67 40.3
Sp5g00630 Schrenkiella parvula HOM05D000001 ORTHO05D000003 3.3e-06 54.7 65 43.1
TAR625G0686 Trochodendron aralioides HOM05D000001 ORTHO05D000003 3.3e-06 54.7 64 39.1
vmacro15982 Vaccinium macrocarpon HOM05D000001 ORTHO05D000003 3.3e-06 54.7 68 39.7
arahy.Tifrunner.gnm1.ann1.7GE6T4 Arachis hypogaea HOM05D000001 ORTHO05D000003 4.4e-06 54.3 64 39.1
ClCG09G003010 Citrullus lanatus HOM05D000001 ORTHO05D000003 4.4e-06 54.3 65 40.0
Ciclev10003403m.g Citrus clementina HOM05D000001 ORTHO05D000003 4.4e-06 54.3 67 38.8
Eucgr.C01131 Eucalyptus grandis HOM05D000001 ORTHO05D000003 4.4e-06 54.3 64 40.6
Eucgr.L00294 Eucalyptus grandis HOM05D000001 ORTHO05D000003 4.4e-06 54.3 64 40.6
MD02G1039500 Malus domestica HOM05D000001 ORTHO05D000003 4.4e-06 54.3 67 37.3
Manes.04G111300 Manihot esculenta HOM05D000001 ORTHO05D000003 4.4e-06 54.3 65 38.5
Sp2g06020 Schrenkiella parvula HOM05D000001 ORTHO05D000003 4.4e-06 54.3 67 38.8
AT1G56690 Arabidopsis thaliana HOM05D000001 ORTHO05D000003 5.7e-06 53.9 63 41.3
BcaB07g31137 Brassica carinata HOM05D000001 ORTHO05D000003 5.7e-06 53.9 67 38.8
BcaC04g22076 Brassica carinata HOM05D000001 ORTHO05D000003 5.7e-06 53.9 67 38.8
C09p23760 Brassica napus HOM05D002820 ORTHO05D000003 5.7e-06 53.9 67 38.8
BolC9t55300H Brassica oleracea HOM05D002820 ORTHO05D000003 5.7e-06 53.9 67 38.8
Dinv19687 Davidia involucrata HOM05D000001 ORTHO05D000003 5.7e-06 53.9 64 43.8
RcHm_v2.0_Chr1g0381771 Rosa chinensis HOM05D000001 ORTHO05D000003 5.7e-06 53.9 67 37.3
Zm00001eb315860 Zea mays HOM05D000001 ORTHO05D000003 5.7e-06 53.9 64 42.2
MSTRG.24784 Avicennia marina HOM05D000001 ORTHO05D000003 7.5e-06 53.5 64 35.9
Ciclev10025000m.g Citrus clementina HOM05D000001 ORTHO05D000003 7.5e-06 53.5 63 36.5
Lj1g0024556 Lotus japonicus HOM05D000001 ORTHO05D000003 7.5e-06 53.5 64 45.3
Lj4g0010533 Lotus japonicus HOM05D000001 ORTHO05D000003 7.5e-06 53.5 64 35.9
Nn1g00596 Nelumbo nucifera HOM05D000001 ORTHO05D000175 7.5e-06 53.5 67 37.3
PSO339G0075 Papaver somniferum HOM05D000001 ORTHO05D000003 7.5e-06 53.5 67 34.3
Sabra18G0062500 Salix brachista HOM05D000001 ORTHO05D000003 7.5e-06 53.5 67 38.8
SEGI_00329 Sequoiadendron giganteum HOM05D000001 ORTHO05D004533 7.5e-06 53.5 67 34.3
Thecc.06G030500 Theobroma cacao HOM05D000001 ORTHO05D000003 7.5e-06 53.5 65 38.5
GSVIVG01025337001 Vitis vinifera HOM05D000001 ORTHO05D011690 7.5e-06 53.5 68 35.3
Ciclev10010823m.g Citrus clementina HOM05D000001 ORTHO05D000003 9.7e-06 53.1 64 39.1
Duzib235G0265 Durio zibethinus HOM05D000001 ORTHO05D000003 9.7e-06 53.1 65 38.5
Gorai.010G224300 Gossypium raimondii HOM05D000001 ORTHO05D000003 9.7e-06 53.1 65 40.0
Lj1C24G18 Lonicera japonica HOM05D000001 ORTHO05D000003 9.7e-06 53.1 64 43.8
Nn1g05154 Nelumbo nucifera HOM05D000001 ORTHO05D000003 9.7e-06 53.1 65 41.5
Nn8g39384 Nelumbo nucifera HOM05D000001 ORTHO05D000003 9.7e-06 53.1 64 39.1
PSO384G2422 Papaver somniferum HOM05D000001 ORTHO05D009236 9.7e-06 53.1 67 37.3
PSO478G2081 Papaver somniferum HOM05D000001 ORTHO05D000003 9.7e-06 53.1 67 38.8
GSVIVG01036207001 Vitis vinifera HOM05D000001 ORTHO05D000003 9.7e-06 53.1 66 37.9


User provided reference genes

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