Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0390511 Rosa chinensis HOM05D005259 ORTHO05D006402 0.0e+00 2020.4 1035 100.0
FvH4_4g02690 Fragaria vesca HOM05D005259 ORTHO05D006402 0.0e+00 1597.0 1049 81.4
FAN12G0451 Fragaria x ananassa HOM05D005259 ORTHO05D006402 0.0e+00 1585.5 1051 81.1
FAN22G1888 Fragaria x ananassa HOM05D005259 ORTHO05D006402 0.0e+00 1562.7 1050 79.8
FAN17G1158 Fragaria x ananassa HOM05D005259 ORTHO05D006402 0.0e+00 1557.3 1062 78.6
Prupe.1G030800 Prunus persica HOM05D005259 ORTHO05D006402 0.0e+00 1183.7 1062 62.1
MD16G1208700 Malus domestica HOM05D005259 ORTHO05D006402 0.0e+00 1104.4 1054 58.7
MD13G1207300 Malus domestica HOM05D005259 ORTHO05D006402 2.1e-266 922.9 1063 52.7
Cfa008379 Carpinus fangiana HOM05D005259 ORTHO05D006402 2.8e-218 763.1 1099 44.5
Atru.chr4.2229 Acer truncatum HOM05D005259 ORTHO05D006402 1.4e-217 760.8 1123 43.2
Ciclev10004215m.g Citrus clementina HOM05D005259 ORTHO05D006402 1.5e-216 757.3 1142 43.9
Thecc.04G246200 Theobroma cacao HOM05D005259 ORTHO05D006402 2.2e-199 700.3 1119 41.8
QL06p015741 Quercus lobata HOM05D005259 ORTHO05D006402 1.2e-195 688.0 1080 43.4
COL.COLO4_15792 Corchorus olitorius HOM05D005259 ORTHO05D006402 3.1e-193 679.9 1105 41.0
Duzib212G1015 Durio zibethinus HOM05D005259 ORTHO05D006402 2.0e-192 677.2 1127 40.1
CiPaw.01G190300 Carya illinoinensis HOM05D005259 ORTHO05D001287 5.5e-190 669.1 1101 41.3
Duzib151G0402 Durio zibethinus HOM05D005259 ORTHO05D006402 1.2e-189 667.9 1124 40.3
Manes.03G168800 Manihot esculenta HOM05D005259 ORTHO05D006402 2.6e-187 660.2 1107 40.7
Potri.008G162500 Populus trichocarpa HOM05D005259 ORTHO05D006402 7.5e-187 658.7 1104 40.8
Duzib052G0218 Durio zibethinus HOM05D005259 ORTHO05D006402 2.5e-182 643.7 1119 40.5
TAR633G1135 Trochodendron aralioides HOM05D005259 ORTHO05D006402 1.5e-179 634.4 1168 38.4
CiPaw.02G116300 Carya illinoinensis HOM05D005259 ORTHO05D006402 2.0e-179 634.0 1144 38.5
Cpa.g.sc58.48 Carica papaya HOM05D005259 ORTHO05D006402 7.5e-179 632.1 1116 38.5
TAR362G0225 Trochodendron aralioides HOM05D005259 ORTHO05D006402 1.9e-177 627.5 1165 37.3
Sabra08G0123900 Salix brachista HOM05D005259 ORTHO05D006402 3.0e-175 620.2 1103 39.6
CSS0027429 Camellia sinensis var. sinensis HOM05D005259 ORTHO05D006402 8.6e-175 618.6 1117 38.3
TWI73G0531 Tripterygium wilfordii HOM05D005259 ORTHO05D006402 1.5e-171 607.8 1132 38.1
CSS0043582 Camellia sinensis var. sinensis HOM05D005259 ORTHO05D006402 3.4e-171 606.7 1118 38.0
Potri.010G076700 Populus trichocarpa HOM05D005259 ORTHO05D006402 1.3e-170 604.7 1106 38.7
Glyma.01G234600 Glycine max HOM05D005259 ORTHO05D006402 4.9e-162 576.2 1092 36.8
GSVIVG01018119001 Vitis vinifera HOM05D005259 ORTHO05D006402 2.3e-159 567.4 1102 36.5
Manes.15G037000 Manihot esculenta HOM05D005259 ORTHO05D006402 5.1e-159 566.2 1067 38.1
Glyma.11G008300 Glycine max HOM05D005259 ORTHO05D006402 8.6e-159 565.5 1092 36.1
VMungo1215G2763 Vigna mungo HOM05D005259 ORTHO05D006402 3.1e-156 557.0 1094 35.8
Actinidia04478 Actinidia chinensis HOM05D005259 ORTHO05D002253 3.2e-153 547.0 1094 36.8
arahy.Tifrunner.gnm1.ann1.SM0BS0 Arachis hypogaea HOM05D005259 ORTHO05D006402 8.1e-149 532.3 1088 35.2
Hma1.2p1_0650F.1_g195420 Hydrangea macrophylla HOM05D005259 ORTHO05D006402 2.4e-148 530.8 1111 35.8
Sabra10G0032100 Salix brachista HOM05D005259 ORTHO05D006402 1.7e-146 524.6 1049 37.0
LjContig00222g0005017 Lotus japonicus HOM05D005259 ORTHO05D006402 2.5e-142 510.8 1080 34.5
Phvul.002G042000 Phaseolus vulgaris HOM05D005259 ORTHO05D006402 1.8e-135 488.0 1054 34.1
ClCG05G004600 Citrullus lanatus HOM05D005259 ORTHO05D006402 1.6e-133 481.5 1121 34.7
Rhsim04G0190300 Rhododendron simsii HOM05D005259 ORTHO05D006402 1.3e-130 471.9 1085 34.2
Sed0002321 Sechium edule HOM05D005259 ORTHO05D006402 2.7e-128 464.2 1118 33.2
Sc13g0005040 Simmondsia chinensis HOM05D005259 ORTHO05D006402 2.7e-128 464.2 1116 33.6
Potri.008G162150 Populus trichocarpa HOM05D005259 ORTHO05D006402 3.5e-128 463.8 893 38.6
MELO3C006469.2 Cucumis melo HOM05D005259 ORTHO05D006402 4.6e-128 463.4 1117 33.1
MBI04_g07579_MAGBIO Magnolia biondii HOM05D005259 ORTHO05D006402 1.3e-127 461.8 1197 32.6
Cc03_g04860 Coffea canephora HOM05D005259 ORTHO05D006402 2.3e-127 461.1 1082 33.4
Lalb_Chr09g0320051 Lupinus albus HOM05D005259 ORTHO05D006402 3.9e-127 460.3 1071 33.2
CsaV3_3G012580 Cucumis sativus L. HOM05D005259 ORTHO05D006402 9.6e-126 455.7 1108 34.1
vmacro08412 Vaccinium macrocarpon HOM05D005259 ORTHO05D006402 6.2e-125 453.0 1079 33.4
Medtr5g007040 Medicago truncatula HOM05D005259 ORTHO05D006402 1.8e-124 451.4 1069 32.6
Nn1g02609 Nelumbo nucifera HOM05D005259 ORTHO05D006402 2.9e-122 444.1 1193 31.6
Nitab4.5_0004798g0010 Nicotiana tabacum HOM05D005259 ORTHO05D006402 3.8e-122 443.7 1067 33.0
Sopen09g032310 Solanum pennellii HOM05D005259 ORTHO05D006402 4.9e-122 443.4 1081 32.2
Gohir.A09G223300 Gossypium hirsutum HOM05D005259 ORTHO05D006402 1.4e-121 441.8 1070 34.7
Gohir.D09G225300 Gossypium hirsutum HOM05D005259 ORTHO05D006402 4.2e-121 440.3 1066 34.1
Peaxi162Scf00813g00016 Petunia axillaris HOM05D005259 ORTHO05D006402 9.3e-121 439.1 1072 33.1
Gorai.006G246800 Gossypium raimondii HOM05D005259 ORTHO05D006402 1.2e-120 438.7 1069 34.4
PGSC0003DMG400001126 Solanum tuberosum HOM05D005259 ORTHO05D006402 2.3e-119 434.5 1077 32.8
CAN.G1007.13 Capsicum annuum HOM05D005259 ORTHO05D006402 1.3e-117 428.7 1082 32.7
Eucgr.H03158 Eucalyptus grandis HOM05D005259 ORTHO05D006402 2.4e-116 424.5 869 36.9
Nn3g19539 Nelumbo nucifera HOM05D005259 ORTHO05D006402 2.0e-115 421.4 1180 31.5
PSO210G6035 Papaver somniferum HOM05D005259 ORTHO05D006402 2.1e-112 411.4 1154 31.2
TPR.G37888 Trifolium pratense HOM05D005259 ORTHO05D006402 2.3e-111 407.9 1095 31.4
PSO832G3620 Papaver somniferum HOM05D005259 ORTHO05D006402 1.3e-109 402.1 1151 30.9
Psat2g189680 Pisum sativum HOM05D005259 ORTHO05D006402 1.7e-109 401.7 1059 31.8
Oeu049793.2 Olea europaea HOM05D005259 ORTHO05D006402 1.1e-108 399.1 1116 30.8
Sed0017180 Sechium edule HOM05D005259 ORTHO05D006402 1.4e-108 398.7 1080 32.5
Aqoxy5G00317 Aquilegia oxysepala HOM05D005259 ORTHO05D006402 2.7e-104 384.4 1181 30.6
MSTRG.24702 Avicennia marina HOM05D005259 ORTHO05D006402 4.7e-104 383.6 1097 31.8
Ca_24427_v3 Cicer arietinum L. HOM05D005259 ORTHO05D006402 1.1e-102 379.0 1091 31.5
Dinv29911 Davidia involucrata HOM05D005259 ORTHO05D006402 9.7e-102 375.9 587 42.2
Aa31LG5G3600 Aethionema arabicum HOM05D005259 ORTHO05D006402 5.3e-100 370.2 796 35.7
Nitab4.5_0000525g0240 Nicotiana tabacum HOM05D005259 ORTHO05D006402 8.5e-98 362.8 1054 31.1
Oeu003588.2 Olea europaea HOM05D005259 ORTHO05D006402 1.1e-97 362.5 850 34.5
Sp2g08420 Schrenkiella parvula HOM05D005259 ORTHO05D006402 1.2e-96 359.0 823 34.1
Actinidia40086 Actinidia chinensis HOM05D005259 ORTHO05D006402 2.3e-95 354.8 1066 30.2
Carub.0008s0502 Capsella rubella HOM05D005259 ORTHO05D006402 9.7e-94 349.4 752 35.5
MSTRG.9924 Avicennia marina HOM05D005259 ORTHO05D006402 2.2e-93 348.2 1092 29.6
Thhalv10003150m.g Eutrema salsugineum HOM05D005259 ORTHO05D006402 4.8e-93 347.1 822 33.5
AT5G43630 Arabidopsis thaliana HOM05D005259 ORTHO05D006402 1.6e-91 342.0 740 35.3
Dinv44635 Davidia involucrata HOM05D005259 ORTHO05D006402 6.5e-90 336.7 666 39.0
DCAR_002351 Daucus carota HOM05D005259 ORTHO05D006402 2.3e-87 328.2 1083 29.5
BcaC06g31686 Brassica carinata HOM05D005259 ORTHO05D006402 1.8e-84 318.5 754 32.5
C07p26220 Brassica napus HOM05D005259 ORTHO05D006402 1.6e-83 315.5 729 34.0
BcaC06g34639 Brassica carinata HOM05D005259 ORTHO05D006402 2.7e-83 314.7 814 32.8
BolC7t43150H Brassica oleracea HOM05D005259 ORTHO05D006402 4.5e-83 313.9 729 33.9
RcHm_v2.0_Chr7g0198831 Rosa chinensis HOM05D005259 ORTHO05D006402 1.7e-82 312.0 157 95.5
BraA06t27646Z Brassica rapa HOM05D005259 ORTHO05D006402 7.2e-81 306.6 813 31.4
A06p47780 Brassica napus HOM05D005259 ORTHO05D006402 2.1e-80 305.1 880 30.2
Haze_11300 Corylus avellana HOM05D005259 ORTHO05D006402 8.0e-80 303.1 421 44.7
BcaB07g30565 Brassica carinata HOM05D005259 ORTHO05D006402 1.8e-79 302.0 682 32.8
CDE07G1991 Ceratophyllum demersum HOM05D000989 ORTHO05D006402 5.4e-68 263.8 722 30.6
Medtr6g046940 Medicago truncatula HOM05D005259 ORTHO05D006402 5.6e-65 253.8 693 29.9
ATR0665G554 Amborella trichopoda HOM05D005259 ORTHO05D006402 3.2e-60 238.0 1107 25.3
Glyma.10G185100 Glycine max HOM05D005259 ORTHO05D006402 1.3e-58 232.6 799 30.4
Nitab4.5_0004798g0040 Nicotiana tabacum HOM05D005259 ORTHO05D006402 6.2e-56 223.8 516 32.8
VMungo0720G1316 Vigna mungo HOM05D005259 ORTHO05D006402 6.8e-55 220.3 793 29.3
Dinv29910 Davidia involucrata HOM05D005259 ORTHO05D006402 2.6e-54 218.4 522 35.1
CARHR006260 Cardamine hirsuta HOM05D005259 ORTHO05D006402 4.4e-54 217.6 572 32.0
Actinidia08443 Actinidia chinensis HOM05D005259 ORTHO05D006402 1.3e-53 216.1 331 40.2
Dinv44634 Davidia involucrata HOM05D005259 ORTHO05D006402 1.6e-48 199.1 253 48.2
Lj5g0013708 Lotus japonicus HOM05D005259 ORTHO05D006402 3.6e-48 198.0 762 28.5
Lalb_Chr06g0169311 Lupinus albus HOM05D005259 ORTHO05D006402 8.1e-48 196.8 741 29.1
Actinidia08442 Actinidia chinensis HOM05D005259 ORTHO05D006402 1.1e-47 196.4 381 36.7
Solyc09g083390.3 Solanum lycopersicum HOM05D005259 ORTHO05D006402 1.5e-46 192.6 667 28.5
Nitab4.5_0000525g0230 Nicotiana tabacum HOM05D005259 ORTHO05D006402 1.4e-44 186.0 494 32.2
Lalb_Chr02g0150411 Lupinus albus HOM05D005259 ORTHO05D006402 1.9e-44 185.7 774 28.3
THA.LOC104815985 Tarenaya hassleriana HOM05D000856 ORTHO05D001792 1.9e-44 185.7 300 36.0
Migut.G00437 Erythranthe guttata HOM05D005259 ORTHO05D006402 1.7e-42 179.1 976 25.8
Os01g0775100 Oryza sativa ssp. japonica HOM05D005259 ORTHO05D006402 3.9e-42 177.9 715 27.4
Ca_09836_v3 Cicer arietinum L. HOM05D005259 ORTHO05D006402 1.6e-40 172.6 754 26.7
Actinidia05464 Actinidia chinensis HOM05D005259 ORTHO05D006402 3.6e-40 171.4 300 38.3
Phvul.007G125900 Phaseolus vulgaris HOM05D005259 ORTHO05D006402 2.4e-39 168.7 787 27.8
Migut.N00239 Erythranthe guttata HOM05D005259 ORTHO05D006402 5.8e-38 164.1 1041 24.7
SGA_v2.0_scaffold88G27281 Striga asiatica HOM05D005259 ORTHO05D006402 7.6e-38 163.7 424 30.9
HanXRQChr13g0424471 Helianthus annuus HOM05D005259 ORTHO05D006402 7.8e-35 153.7 168 48.8
Nitab4.5_0000036g0130 Nicotiana tabacum HOM05D005259 ORTHO05D006402 1.6e-32 146.0 173 47.4
Lsat_1_v5_gn_3_123200 Lactuca sativa HOM05D005259 ORTHO05D006402 1.1e-31 143.3 158 48.7
HPP92_018440 Vanilla planifolia HOM05D005259 ORTHO05D006402 3.1e-31 141.7 729 24.3
HanXRQChr15g0468851 Helianthus annuus HOM05D005259 ORTHO05D006402 1.5e-30 139.4 187 43.3
ECA240G1753 Erigeron canadensis HOM05D005259 ORTHO05D006402 2.0e-30 139.0 167 44.3
HanXRQChr03g0092361 Helianthus annuus HOM05D005259 ORTHO05D006402 2.6e-30 138.7 137 48.2
Lsat_1_v5_gn_5_72841 Lactuca sativa HOM05D005259 ORTHO05D006402 4.4e-30 137.9 186 42.5
ECA233G4142 Erigeron canadensis HOM05D005259 ORTHO05D006402 2.2e-29 135.6 197 40.6
Lj6A656T71 Lonicera japonica HOM05D005259 ORTHO05D006402 4.9e-29 134.4 221 38.0
Cc00_g33140 Coffea canephora HOM05D005259 ORTHO05D006402 2.7e-27 128.6 116 56.9
SalBow3G4073 Salvia bowleyana HOM05D005259 ORTHO05D006402 1.3e-24 119.8 130 46.2
Medtr1g075280 Medicago truncatula HOM05D005259 ORTHO05D006402 3.1e-23 115.2 525 25.5
Zm00001eb151720 Zea mays HOM05D005259 ORTHO05D006402 5.3e-23 114.4 707 23.6
SMO111G0058 Selaginella moellendorffii HOM05D007564 ORTHO05D013712 2.9e-21 108.6 309 26.9
arahy.Tifrunner.gnm1.ann1.7CP98C Arachis hypogaea HOM05D005259 ORTHO05D006402 6.0e-19 100.9 311 29.6
SMO205G0008 Selaginella moellendorffii HOM05D007564 ORTHO05D009975 6.0e-19 100.9 307 26.4
SMO276G0057 Selaginella moellendorffii HOM05D007564 ORTHO05D009975 5.1e-18 97.8 324 26.2
arahy.Tifrunner.gnm1.ann1.TEF2FC Arachis hypogaea HOM05D005259 ORTHO05D006402 1.5e-17 96.3 371 28.0
TPR.G27199 Trifolium pratense HOM05D005259 ORTHO05D006402 1.9e-17 95.9 464 27.4
arahy.Tifrunner.gnm1.ann1.YIX0R7 Arachis hypogaea HOM05D005259 ORTHO05D006402 4.3e-17 94.7 372 26.3
MBI04_g45851_MAGBIO Magnolia biondii HOM05D005259 ORTHO05D006402 5.3e-15 87.8 435 25.1
TPR.G17184 Trifolium pratense HOM05D005259 ORTHO05D006402 5.3e-15 87.8 68 60.3
Cc00_g10240 Coffea canephora HOM05D005259 ORTHO05D006402 1.7e-13 82.8 66 59.1
Lj6A656T72 Lonicera japonica HOM05D005259 ORTHO05D006402 1.7e-13 82.8 168 39.3
THA.LOC104815984 Tarenaya hassleriana HOM05D005259 ORTHO05D006402 1.7e-13 82.8 289 27.7
Psat4g092760 Pisum sativum HOM05D005259 ORTHO05D006402 2.6e-06 58.9 450 22.2


User provided reference genes

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