Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0389331 Rosa chinensis HOM05D001876 ORTHO05D050371 1.8e-24 115.2 62 100.0
RcHm_v2.0_Chr4g0389201 Rosa chinensis HOM05D001876 ORTHO05D002002 7.8e-23 109.8 62 95.2
Prupe.6G032100 Prunus persica HOM05D001876 ORTHO05D002002 1.1e-13 79.3 52 80.8
RcHm_v2.0_Chr5g0075171 Rosa chinensis HOM05D001876 ORTHO05D002002 7.3e-13 76.6 52 82.7
Actinidia03661 Actinidia chinensis HOM05D001876 ORTHO05D002002 1.6e-12 75.5 52 75.0
Atru.chr2.3845 Acer truncatum HOM05D001876 ORTHO05D002002 3.6e-12 74.3 52 73.1
MD11G1041300 Malus domestica HOM05D001876 ORTHO05D002002 3.6e-12 74.3 52 75.0
MD03G1039800 Malus domestica HOM05D001876 ORTHO05D002002 8.1e-12 73.2 52 71.2
RcHm_v2.0_Chr4g0407801 Rosa chinensis HOM05D000005 ORTHO05D000012 8.1e-12 73.2 53 77.4
Phvul.006G060500 Phaseolus vulgaris HOM05D001876 ORTHO05D002002 1.1e-11 72.8 52 71.2
TAR626G0018 Trochodendron aralioides HOM05D001876 ORTHO05D002002 1.1e-11 72.8 51 72.5
Dinv40896 Davidia involucrata HOM05D001876 ORTHO05D002002 1.4e-11 72.4 51 72.5
Sc07g0002250 Simmondsia chinensis HOM05D001876 ORTHO05D002002 1.4e-11 72.4 51 74.5
CANSAT11G0621 Cannabis sativa HOM05D001876 ORTHO05D002002 1.8e-11 72.0 52 69.2
Lj1A897T44 Lonicera japonica HOM05D001876 ORTHO05D002002 1.8e-11 72.0 50 74.0
FAN25G1930 Fragaria x ananassa HOM05D001876 ORTHO05D002002 2.3e-11 71.6 52 80.8
Dinv10376 Davidia involucrata HOM05D001876 ORTHO05D002002 4.0e-11 70.9 51 70.6
Glyma.18G072400 Glycine max HOM05D001876 ORTHO05D002002 4.0e-11 70.9 52 67.3
FAN11G3885 Fragaria x ananassa HOM05D001876 ORTHO05D002002 5.2e-11 70.5 52 78.8
FAN16G1749 Fragaria x ananassa HOM05D001876 ORTHO05D002002 5.2e-11 70.5 52 78.8
FAN21G2243 Fragaria x ananassa HOM05D001876 ORTHO05D002002 5.2e-11 70.5 52 78.8
Actinidia30365 Actinidia chinensis HOM05D001876 ORTHO05D002002 1.5e-10 68.9 52 67.3
FvH4_3g41980 Fragaria vesca HOM05D001876 ORTHO05D002002 1.5e-10 68.9 52 76.9
Ciclev10007261m.g Citrus clementina HOM05D001876 ORTHO05D002002 2.0e-10 68.6 51 68.6
Actinidia10583 Actinidia chinensis HOM05D001876 ORTHO05D002002 2.6e-10 68.2 52 69.2
MSTRG.14512 Avicennia marina HOM05D001876 ORTHO05D002002 2.6e-10 68.2 51 66.7
Nitab4.5_0000152g0190 Nicotiana tabacum HOM05D001876 ORTHO05D002002 2.6e-10 68.2 52 65.4
Nitab4.5_0001303g0100 Nicotiana tabacum HOM05D001876 ORTHO05D002002 2.6e-10 68.2 52 65.4
Nn1g07691 Nelumbo nucifera HOM05D001876 ORTHO05D002002 3.4e-10 67.8 51 66.7
Peaxi162Scf00232g00036 Petunia axillaris HOM05D001876 ORTHO05D002002 3.4e-10 67.8 52 65.4
SalBow8G1221 Salvia bowleyana HOM05D001876 ORTHO05D002002 3.4e-10 67.8 52 65.4
SalBow8G5543 Salvia bowleyana HOM05D001876 ORTHO05D002002 3.4e-10 67.8 52 65.4
CiPaw.12G141800 Carya illinoinensis HOM05D001876 ORTHO05D002002 4.4e-10 67.4 51 66.7
Oeu026625.1 Olea europaea HOM05D001876 ORTHO05D002002 4.4e-10 67.4 51 66.7
ATR0751G014 Amborella trichopoda HOM05D001876 ORTHO05D002002 5.8e-10 67.0 51 64.7
ClCG10G004140 Citrullus lanatus HOM05D001876 ORTHO05D002002 5.8e-10 67.0 52 67.3
Eucgr.F02007 Eucalyptus grandis HOM05D001876 ORTHO05D002002 7.5e-10 66.6 52 67.3
Sopen07g034150 Solanum pennellii HOM05D001876 ORTHO05D002002 7.5e-10 66.6 52 63.5
Medtr2g027690 Medicago truncatula HOM05D001876 ORTHO05D002002 9.8e-10 66.2 48 70.8
Sed0017004 Sechium edule HOM05D001876 ORTHO05D002002 1.3e-09 65.9 52 65.4
MELO3C014084.2 Cucumis melo HOM05D001876 ORTHO05D002002 1.7e-09 65.5 52 65.4
CsaV3_3G003970 Cucumis sativus L. HOM05D001876 ORTHO05D002002 1.7e-09 65.5 52 65.4
Manes.08G015400 Manihot esculenta HOM05D001876 ORTHO05D002002 1.7e-09 65.5 50 64.0
Cfa016942 Carpinus fangiana HOM05D001876 ORTHO05D002002 2.2e-09 65.1 51 66.7
Gorai.004G034200 Gossypium raimondii HOM05D001876 ORTHO05D002002 3.7e-09 64.3 50 66.0
Sc20g0000100 Simmondsia chinensis HOM05D001876 ORTHO05D002002 3.7e-09 64.3 56 62.5
Haze_09897 Corylus avellana HOM05D001876 ORTHO05D002002 4.9e-09 63.9 51 64.7
Gohir.A08G025700 Gossypium hirsutum HOM05D001876 ORTHO05D002002 4.9e-09 63.9 50 66.0
Gohir.D08G036200 Gossypium hirsutum HOM05D001876 ORTHO05D002002 4.9e-09 63.9 50 66.0
GSVIVG01014783001 Vitis vinifera HOM05D001876 ORTHO05D002002 4.9e-09 63.9 51 60.8
Dinv06828 Davidia involucrata HOM05D001876 ORTHO05D002002 6.4e-09 63.5 51 62.7
Sed0022328 Sechium edule HOM05D001876 ORTHO05D002002 6.4e-09 63.5 49 65.3
Cpa.g.sc12.90 Carica papaya HOM05D001876 ORTHO05D002002 8.3e-09 63.2 50 64.0
MBI15_g00880_MAGBIO Magnolia biondii HOM05D001876 ORTHO05D002002 8.3e-09 63.2 51 62.7
QL08p001531 Quercus lobata HOM05D001876 ORTHO05D002002 8.3e-09 63.2 51 64.7
Ciclev10014046m.g Citrus clementina HOM05D001876 ORTHO05D002002 1.1e-08 62.8 52 59.6
Hma1.2p1_0193F.1_g084140 Hydrangea macrophylla HOM05D001876 ORTHO05D002002 1.1e-08 62.8 51 60.8
Hma1.2p1_2995F.1_g331450 Hydrangea macrophylla HOM05D001876 ORTHO05D002002 1.1e-08 62.8 51 60.8
TWI63G1743 Tripterygium wilfordii HOM05D001876 ORTHO05D002002 1.1e-08 62.8 51 62.7
CANSAT56G1356 Cannabis sativa HOM05D001876 ORTHO05D002002 1.4e-08 62.4 51 64.7
Oeu005542.2 Olea europaea HOM05D001876 ORTHO05D002002 1.4e-08 62.4 51 62.7
Oeu062674.2 Olea europaea HOM05D001876 ORTHO05D002002 1.4e-08 62.4 51 62.7
Medtr3g061160 Medicago truncatula HOM05D001876 ORTHO05D002002 1.9e-08 62.0 51 64.7
Thecc.07G005200 Theobroma cacao HOM05D001876 ORTHO05D002002 1.9e-08 62.0 50 60.0
arahy.Tifrunner.gnm1.ann1.49CTIT Arachis hypogaea HOM05D001876 ORTHO05D002002 2.4e-08 61.6 51 64.7
arahy.Tifrunner.gnm1.ann1.LQ166S Arachis hypogaea HOM05D001876 ORTHO05D002002 2.4e-08 61.6 51 64.7
arahy.Tifrunner.gnm1.ann1.SQBY3A Arachis hypogaea HOM05D001876 ORTHO05D002002 2.4e-08 61.6 51 64.7
Potri.016G002100 Populus trichocarpa HOM05D001876 ORTHO05D002002 2.4e-08 61.6 51 58.8
COL.COLO4_31961 Corchorus olitorius HOM05D001876 ORTHO05D002002 3.2e-08 61.2 51 60.8
Duzib268G1004 Durio zibethinus HOM05D001876 ORTHO05D002002 3.2e-08 61.2 51 58.8
MBI14_g30654_MAGBIO Magnolia biondii HOM05D001876 ORTHO05D002002 3.2e-08 61.2 47 66.0
Manes.01G005000 Manihot esculenta HOM05D001876 ORTHO05D002002 3.2e-08 61.2 51 62.7
COL.COLO4_07762 Corchorus olitorius HOM05D001876 ORTHO05D002002 4.1e-08 60.8 50 60.0
Duzib213G0425 Durio zibethinus HOM05D001876 ORTHO05D002002 4.1e-08 60.8 51 60.8
arahy.Tifrunner.gnm1.ann1.EXSC1B Arachis hypogaea HOM05D001876 ORTHO05D002002 5.4e-08 60.5 50 60.0
arahy.Tifrunner.gnm1.ann1.M7DLA2 Arachis hypogaea HOM05D001876 ORTHO05D002002 5.4e-08 60.5 50 60.0
Peaxi162Scf00006g00717 Petunia axillaris HOM05D001876 ORTHO05D002002 7.1e-08 60.1 52 57.7
Sabra16G0007100 Salix brachista HOM05D001876 ORTHO05D002002 7.1e-08 60.1 51 56.9
SGA_v2.0_scaffold42G15938 Striga asiatica HOM05D001876 ORTHO05D002002 7.1e-08 60.1 48 62.5
arahy.Tifrunner.gnm1.ann1.ADA7T8 Arachis hypogaea HOM05D001876 ORTHO05D002002 9.2e-08 59.7 51 62.7
CDE10G0998 Ceratophyllum demersum HOM05D001876 ORTHO05D002002 9.2e-08 59.7 51 54.9
Rhsim04G0009400 Rhododendron simsii HOM05D001876 ORTHO05D002002 9.2e-08 59.7 51 60.8
Nitab4.5_0000611g0240 Nicotiana tabacum HOM05D001876 ORTHO05D002002 1.6e-07 58.9 39 76.9
Nitab4.5_0001622g0060 Nicotiana tabacum HOM05D001876 ORTHO05D002002 1.6e-07 58.9 39 76.9
Hund01842 Selenicereus undatus HOM05D001876 ORTHO05D002002 1.6e-07 58.9 54 61.1
Gohir.A09G067700 Gossypium hirsutum HOM05D001876 ORTHO05D002002 2.1e-07 58.5 51 56.9
Gohir.D09G067400 Gossypium hirsutum HOM05D001876 ORTHO05D002002 2.1e-07 58.5 51 56.9
Gorai.006G081900 Gossypium raimondii HOM05D001876 ORTHO05D002002 2.1e-07 58.5 51 56.9
Phvul.006G135300 Phaseolus vulgaris HOM05D001876 ORTHO05D002002 2.1e-07 58.5 48 60.4
unitig_578.g16308 Utricularia gibba HOM05D001876 ORTHO05D002002 2.1e-07 58.5 51 52.9
Gohir.D09G067300 Gossypium hirsutum HOM05D001876 ORTHO05D002002 2.7e-07 58.2 51 56.9
PGR004G0187 Punica granatum HOM05D001876 ORTHO05D002002 2.7e-07 58.2 51 54.9
Cpa.g.sc27.194 Carica papaya HOM05D001876 ORTHO05D002002 3.5e-07 57.8 51 58.8
Duzib170G0551 Durio zibethinus HOM05D001876 ORTHO05D002002 3.5e-07 57.8 51 56.9
QL05p066377 Quercus lobata HOM05D001876 ORTHO05D002002 3.5e-07 57.8 51 58.8
TWI39G0122 Tripterygium wilfordii HOM05D001876 ORTHO05D002002 3.5e-07 57.8 52 57.7
Cfa000007 Carpinus fangiana HOM05D001876 ORTHO05D002002 4.6e-07 57.4 50 58.0
Duzib192G0376 Durio zibethinus HOM05D001876 ORTHO05D002002 4.6e-07 57.4 51 54.9
Gohir.A09G067600 Gossypium hirsutum HOM05D001876 ORTHO05D002002 4.6e-07 57.4 51 56.9
Thecc.06G243400 Theobroma cacao HOM05D001876 ORTHO05D002002 4.6e-07 57.4 51 54.9
Atru.chr1.2235 Acer truncatum HOM05D001876 ORTHO05D002002 6.0e-07 57.0 48 58.3
AUR62035638 Chenopodium quinoa HOM05D001876 ORTHO05D002002 6.0e-07 57.0 51 56.9
Migut.H01726 Erythranthe guttata HOM05D001876 ORTHO05D002002 6.0e-07 57.0 51 56.9
Nn1g08429 Nelumbo nucifera HOM05D001876 ORTHO05D002002 6.0e-07 57.0 51 62.7
Pp3c9_4880 Physcomitrium patens HOM05D001876 ORTHO05D002002 7.8e-07 56.6 48 58.3
Sed0006897 Sechium edule HOM05D001876 ORTHO05D002002 7.8e-07 56.6 52 57.7
EL10Ac4g07507 Beta vulgaris HOM05D001876 ORTHO05D002002 1.0e-06 56.2 51 54.9
THA.LOC104815682 Tarenaya hassleriana HOM05D001876 ORTHO05D002002 1.3e-06 55.8 51 54.9
TPR.G10492 Trifolium pratense HOM05D001876 ORTHO05D002002 1.3e-06 55.8 47 61.7
TAR629G2148 Trochodendron aralioides HOM05D001876 ORTHO05D002002 1.3e-06 55.8 37 70.3
Duzib235G0083 Durio zibethinus HOM05D001876 ORTHO05D002002 1.7e-06 55.5 51 54.9
MBI15_g35676_MAGBIO Magnolia biondii HOM05D001876 ORTHO05D002002 1.7e-06 55.5 51 54.9
PGR083G0485 Punica granatum HOM05D001876 ORTHO05D002002 1.7e-06 55.5 48 54.2
CDE10G0783 Ceratophyllum demersum HOM05D001876 ORTHO05D002002 2.3e-06 55.1 49 51.0
Haze_07052 Corylus avellana HOM05D001876 ORTHO05D002002 2.3e-06 55.1 50 56.0
SEGI_32915 Sequoiadendron giganteum HOM05D001876 ORTHO05D002002 2.3e-06 55.1 50 54.0
HPP92_015744 Vanilla planifolia HOM05D001876 ORTHO05D002002 2.3e-06 55.1 46 54.3
HPP92_017870 Vanilla planifolia HOM05D001876 ORTHO05D002002 2.3e-06 55.1 47 53.2
Manes.05G206100 Manihot esculenta HOM05D001876 ORTHO05D002002 3.0e-06 54.7 50 56.0
TWI38G1429 Tripterygium wilfordii HOM05D001876 ORTHO05D002002 3.0e-06 54.7 49 59.2
AagrBONN_evm.TU.Sc2ySwM_228.5719 Anthoceros agrestis HOM05D001876 ORTHO05D000003 3.9e-06 54.3 51 54.9
SGA_v2.0_scaffold8G04429 Striga asiatica HOM05D001876 ORTHO05D002002 3.9e-06 54.3 48 60.4
TPR.G17949 Trifolium pratense HOM05D001876 ORTHO05D002002 3.9e-06 54.3 37 67.6
DCAR_017598 Daucus carota HOM05D001876 ORTHO05D002002 5.1e-06 53.9 49 53.1
Mapoly0037s0026 Marchantia polymorpha HOM05D001876 ORTHO05D002002 5.1e-06 53.9 48 54.2
CiPaw.10G084200 Carya illinoinensis HOM05D001876 ORTHO05D002002 6.6e-06 53.5 56 53.6
Gorai.006G081700 Gossypium raimondii HOM05D001876 ORTHO05D002002 6.6e-06 53.5 52 55.8
Solyc10g005920.4 Solanum lycopersicum HOM05D001876 ORTHO05D002002 6.6e-06 53.5 37 70.3
VMungo0540G1408 Vigna mungo HOM05D001876 ORTHO05D002002 6.6e-06 53.5 52 55.8
Eucgr.E04228 Eucalyptus grandis HOM05D001876 ORTHO05D002002 8.6e-06 53.1 51 52.9
MBI15_g41024_MAGBIO Magnolia biondii HOM05D001876 ORTHO05D002002 8.6e-06 53.1 51 54.9
Pp3s1173_10 Physcomitrium patens HOM05D001876 ORTHO05D050371 8.6e-06 53.1 53 50.9
Potri.011G166400 Populus trichocarpa HOM05D001876 ORTHO05D002002 8.6e-06 53.1 51 54.9


User provided reference genes

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