Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0389211 Rosa chinensis HOM05D001876 ORTHO05D019192 1.1e-47 193.0 98 100.0
RcHm_v2.0_Chr4g0389341 Rosa chinensis HOM05D001876 ORTHO05D002002 4.5e-25 117.9 73 86.3
FvH4_3g41972 Fragaria vesca HOM05D001876 ORTHO05D002002 1.2e-22 109.8 73 80.8
FAN11G3885 Fragaria x ananassa HOM05D001876 ORTHO05D002002 1.2e-22 109.8 73 80.8
Cfa016942 Carpinus fangiana HOM05D001876 ORTHO05D002002 8.0e-22 107.1 73 75.3
DCAR_017598 Daucus carota HOM05D001876 ORTHO05D002002 1.4e-21 106.3 72 77.8
FAN25G1930 Fragaria x ananassa HOM05D001876 ORTHO05D002002 1.8e-21 105.9 69 81.2
Duzib170G0551 Durio zibethinus HOM05D001876 ORTHO05D002002 4.0e-21 104.8 73 74.0
Nitab4.5_0000152g0190 Nicotiana tabacum HOM05D001876 ORTHO05D002002 4.0e-21 104.8 73 71.2
Nitab4.5_0001303g0100 Nicotiana tabacum HOM05D001876 ORTHO05D002002 4.0e-21 104.8 73 71.2
Haze_09897 Corylus avellana HOM05D001876 ORTHO05D002002 5.2e-21 104.4 73 72.6
FAN21G2243 Fragaria x ananassa HOM05D001876 ORTHO05D002002 5.2e-21 104.4 69 79.7
Hma1.2p1_0193F.1_g084140 Hydrangea macrophylla HOM05D001876 ORTHO05D002002 5.2e-21 104.4 73 74.0
Hma1.2p1_2995F.1_g331450 Hydrangea macrophylla HOM05D001876 ORTHO05D002002 5.2e-21 104.4 73 74.0
Glyma.18G072400 Glycine max HOM05D001876 ORTHO05D002002 6.7e-21 104.0 73 74.0
TWI38G1429 Tripterygium wilfordii HOM05D001876 ORTHO05D002002 1.5e-20 102.8 73 74.0
TAR627G0307 Trochodendron aralioides HOM05D001876 ORTHO05D002002 2.0e-20 102.4 73 72.6
TAR629G2148 Trochodendron aralioides HOM05D001876 ORTHO05D002002 2.6e-20 102.1 73 74.0
MBI15_g41024_MAGBIO Magnolia biondii HOM05D001876 ORTHO05D002002 3.3e-20 101.7 73 71.2
arahy.Tifrunner.gnm1.ann1.SQBY3A Arachis hypogaea HOM05D001876 ORTHO05D002002 4.4e-20 101.3 73 71.2
Carub.0003s1268 Capsella rubella HOM05D001876 ORTHO05D002002 4.4e-20 101.3 73 68.5
Lj6g0010416 Lotus japonicus HOM05D001876 ORTHO05D002002 4.4e-20 101.3 73 72.6
Phvul.006G060500 Phaseolus vulgaris HOM05D001876 ORTHO05D002002 5.7e-20 100.9 73 72.6
Sabra16G0318400 Salix brachista HOM05D001876 ORTHO05D002002 5.7e-20 100.9 73 69.9
VMungo0540G1408 Vigna mungo HOM05D001876 ORTHO05D002002 5.7e-20 100.9 73 72.6
Cpa.g.sc27.194 Carica papaya HOM05D001876 ORTHO05D002002 7.4e-20 100.5 73 74.0
FAN21G1995 Fragaria x ananassa HOM05D001876 ORTHO05D002002 7.4e-20 100.5 69 78.3
Lalb_Chr20g0115301 Lupinus albus HOM05D001876 ORTHO05D002002 7.4e-20 100.5 73 71.2
arahy.Tifrunner.gnm1.ann1.ADA7T8 Arachis hypogaea HOM05D001876 ORTHO05D002002 1.3e-19 99.8 73 69.9
arahy.Tifrunner.gnm1.ann1.LQ166S Arachis hypogaea HOM05D001876 ORTHO05D002002 1.3e-19 99.8 73 69.9
SHI21632 Sapria himalayana HOM05D001876 ORTHO05D002002 1.3e-19 99.8 73 69.9
Aa31LG10G500 Aethionema arabicum HOM05D001876 ORTHO05D002002 1.7e-19 99.4 73 68.5
AT3G13300 Arabidopsis thaliana HOM05D001876 ORTHO05D002002 2.8e-19 98.6 73 67.1
TPR.G17949 Trifolium pratense HOM05D001876 ORTHO05D002002 2.8e-19 98.6 72 69.4
AL3G25120 Arabidopsis lyrata HOM05D001876 ORTHO05D002002 3.7e-19 98.2 73 65.8
Dinv06828 Davidia involucrata HOM05D001876 ORTHO05D002002 3.7e-19 98.2 73 69.9
Potri.011G166400 Populus trichocarpa HOM05D001876 ORTHO05D002002 6.3e-19 97.4 73 69.9
Atru.chr2.3845 Acer truncatum HOM05D001876 ORTHO05D002002 8.2e-19 97.1 73 68.5
Ca_14851_v3 Cicer arietinum L. HOM05D001876 ORTHO05D002002 1.8e-18 95.9 72 69.4
arahy.Tifrunner.gnm1.ann1.49CTIT Arachis hypogaea HOM05D001876 ORTHO05D002002 2.4e-18 95.5 73 67.1
HanXRQChr03g0077781 Helianthus annuus HOM05D001876 ORTHO05D002002 2.4e-18 95.5 72 65.3
Rhsim06G0234000 Rhododendron simsii HOM05D001876 ORTHO05D002002 2.4e-18 95.5 73 67.1
Nn1g07691 Nelumbo nucifera HOM05D001876 ORTHO05D002002 4.1e-18 94.7 73 65.8
Peaxi162Scf00006g00717 Petunia axillaris HOM05D001876 ORTHO05D002002 4.1e-18 94.7 73 64.4
TAR626G0018 Trochodendron aralioides HOM05D001876 ORTHO05D002002 4.1e-18 94.7 73 69.9
Duzib213G0425 Durio zibethinus HOM05D001876 ORTHO05D002002 5.3e-18 94.4 73 67.1
MBI15_g35676_MAGBIO Magnolia biondii HOM05D001876 ORTHO05D002002 5.3e-18 94.4 73 65.8
HanXRQChr11g0334581 Helianthus annuus HOM05D001876 ORTHO05D002002 7.0e-18 94.0 71 69.0
Medtr3g061160 Medicago truncatula HOM05D001876 ORTHO05D002002 7.0e-18 94.0 72 66.7
Potri.016G002100 Populus trichocarpa HOM05D001876 ORTHO05D002002 1.2e-17 93.2 73 68.5
MBI11_g40896_MAGBIO Magnolia biondii HOM05D001876 ORTHO05D002002 1.6e-17 92.8 73 67.1
FvH4_3g41980 Fragaria vesca HOM05D001876 ORTHO05D002002 2.0e-17 92.4 62 79.0
THA.LOC104810297 Tarenaya hassleriana HOM05D001876 ORTHO05D002002 2.0e-17 92.4 73 65.8
MBI15_g00880_MAGBIO Magnolia biondii HOM05D001876 ORTHO05D002002 2.6e-17 92.0 72 68.1
FAN16G1749 Fragaria x ananassa HOM05D001876 ORTHO05D002002 3.5e-17 91.7 69 72.5
Gohir.D08G036200 Gossypium hirsutum HOM05D001876 ORTHO05D002002 4.5e-17 91.3 73 67.1
Gorai.004G034200 Gossypium raimondii HOM05D001876 ORTHO05D002002 4.5e-17 91.3 73 67.1
Peaxi162Scf00232g00036 Petunia axillaris HOM05D001876 ORTHO05D002002 1.7e-16 89.4 73 63.0
PGR083G2540 Punica granatum HOM05D001876 ORTHO05D002002 2.2e-16 89.0 72 62.5
RcHm_v2.0_Chr4g0407801 Rosa chinensis HOM05D000005 ORTHO05D000012 2.2e-16 89.0 73 68.5
Cfa000007 Carpinus fangiana HOM05D001876 ORTHO05D002002 2.9e-16 88.6 73 64.4
CiPaw.10G084200 Carya illinoinensis HOM05D001876 ORTHO05D002002 2.9e-16 88.6 73 61.6
Hund01842 Selenicereus undatus HOM05D001876 ORTHO05D002002 2.9e-16 88.6 73 63.0
FAN01G0741 Fragaria x ananassa HOM05D001876 ORTHO05D019192 6.5e-16 87.4 76 67.1
FvH4_7g10420 Fragaria vesca HOM05D001876 ORTHO05D019192 8.5e-16 87.0 76 67.1
Gohir.A08G025700 Gossypium hirsutum HOM05D001876 ORTHO05D002002 8.5e-16 87.0 73 64.4
FAN06G0414 Fragaria x ananassa HOM05D001876 ORTHO05D019192 1.9e-15 85.9 76 65.8
Potri.001G469500 Populus trichocarpa HOM05D001876 ORTHO05D002002 2.5e-15 85.5 73 61.6
Sp3g11500 Schrenkiella parvula HOM05D001876 ORTHO05D002002 3.2e-15 85.1 64 65.6
Haze_07052 Corylus avellana HOM05D001876 ORTHO05D002002 4.2e-15 84.7 85 58.8
RcHm_v2.0_Chr5g0075171 Rosa chinensis HOM05D001876 ORTHO05D002002 5.5e-15 84.3 53 84.9
AUR62035638 Chenopodium quinoa HOM05D001876 ORTHO05D002002 7.2e-15 84.0 73 61.6
Actinidia10583 Actinidia chinensis HOM05D001876 ORTHO05D002002 9.4e-15 83.6 71 64.8
FAN10G1274 Fragaria x ananassa HOM05D030657 ORTHO05D019192 9.4e-15 83.6 76 64.5
FAN03G1210 Fragaria x ananassa HOM05D001876 ORTHO05D019192 1.2e-14 83.2 76 64.5
Lsat_1_v5_gn_7_116441 Lactuca sativa HOM05D001876 ORTHO05D002002 2.7e-14 82.0 71 59.2
Dinv10376 Davidia involucrata HOM05D001876 ORTHO05D002002 6.1e-14 80.9 73 63.0
AT3G13290 Arabidopsis thaliana HOM05D001876 ORTHO05D002002 1.0e-13 80.1 73 57.5
FAN25G2172 Fragaria x ananassa HOM05D001876 ORTHO05D002002 2.3e-13 79.0 79 57.0
QL05p066377 Quercus lobata HOM05D001876 ORTHO05D002002 3.0e-13 78.6 73 60.3
GSVIVG01014783001 Vitis vinifera HOM05D001876 ORTHO05D002002 4.0e-13 78.2 73 61.6
CiPaw.09G112100 Carya illinoinensis HOM05D001876 ORTHO05D002002 5.2e-13 77.8 73 57.5
BcaC05g29191 Brassica carinata HOM05D001876 ORTHO05D002002 6.8e-13 77.4 65 56.9
C05p54620 Brassica napus HOM05D001876 ORTHO05D002002 6.8e-13 77.4 65 56.9
BolC5t34127H Brassica oleracea HOM05D001876 ORTHO05D002002 6.8e-13 77.4 65 56.9
THA.LOC104822709 Tarenaya hassleriana HOM05D001876 ORTHO05D002002 6.8e-13 77.4 73 56.2
ECA240G3156 Erigeron canadensis HOM05D001876 ORTHO05D002002 2.6e-12 75.5 54 70.4
HPP92_026159 Vanilla planifolia HOM05D001876 ORTHO05D002002 2.6e-12 75.5 66 56.1
GSVIVG01006976001 Vitis vinifera HOM05D001876 ORTHO05D002002 2.6e-12 75.5 73 56.2
A05p36310 Brassica napus HOM05D001876 ORTHO05D002002 3.4e-12 75.1 62 58.1
BraA05t22432Z Brassica rapa HOM05D001876 ORTHO05D002002 3.4e-12 75.1 62 58.1
SGA_v2.0_scaffold42G15938 Striga asiatica HOM05D001876 ORTHO05D002002 3.4e-12 75.1 73 53.4
GSVIVG01037795001 Vitis vinifera HOM05D001876 ORTHO05D002002 3.4e-12 75.1 73 56.2
BcaC05g30231 Brassica carinata HOM05D001876 ORTHO05D002002 4.4e-12 74.7 63 61.9
DCAR_013771 Daucus carota HOM05D001876 ORTHO05D002002 5.7e-12 74.3 73 60.3
vmacro09608 Vaccinium macrocarpon HOM05D001876 ORTHO05D002002 5.7e-12 74.3 59 64.4
Psat5g163240 Pisum sativum HOM05D001876 ORTHO05D002002 9.8e-12 73.6 55 65.5
Potri.006G001400 Populus trichocarpa HOM05D001876 ORTHO05D002002 9.8e-12 73.6 72 54.2
CDE10G0783 Ceratophyllum demersum HOM05D001876 ORTHO05D002002 2.2e-11 72.4 73 54.8
Lalb_Chr15g0088371 Lupinus albus HOM05D001876 ORTHO05D002002 4.8e-11 71.2 59 55.9
MBI14_g30654_MAGBIO Magnolia biondii HOM05D001876 ORTHO05D002002 4.8e-11 71.2 57 63.2
Sc07g0002250 Simmondsia chinensis HOM05D001876 ORTHO05D002002 4.8e-11 71.2 53 64.2
FAN06G3562 Fragaria x ananassa HOM05D001876 ORTHO05D019192 8.3e-11 70.5 73 58.9
RcHm_v2.0_Chr4g0386931 Rosa chinensis HOM05D001876 ORTHO05D002002 8.3e-11 70.5 49 77.6
CDE10G0998 Ceratophyllum demersum HOM05D001876 ORTHO05D002002 3.1e-10 68.6 73 50.7
Rhsim04G0009400 Rhododendron simsii HOM05D001876 ORTHO05D002002 3.1e-10 68.6 56 62.5
Pp3c15_3440 Physcomitrium patens HOM05D001876 ORTHO05D002002 9.1e-10 67.0 72 51.4
Pp3c15_3450 Physcomitrium patens HOM05D001876 ORTHO05D002002 9.1e-10 67.0 72 51.4
Sopen07g034150 Solanum pennellii HOM05D001876 ORTHO05D002002 1.6e-09 66.2 39 79.5
Dinv04380 Davidia involucrata HOM05D001876 ORTHO05D002002 3.5e-09 65.1 72 54.2
BcaC05g30230 Brassica carinata HOM05D001876 ORTHO05D002002 4.5e-09 64.7 72 47.2
TWI39G0122 Tripterygium wilfordii HOM05D001876 ORTHO05D002002 4.5e-09 64.7 37 86.5
Actinidia31601 Actinidia chinensis HOM05D001876 ORTHO05D002002 5.9e-09 64.3 72 48.6
Lsat_1_v5_gn_9_89380 Lactuca sativa HOM05D001876 ORTHO05D002002 1.0e-08 63.5 48 66.7
Actinidia24799 Actinidia chinensis HOM05D001876 ORTHO05D002002 2.9e-08 62.0 36 86.1
Actinidia03661 Actinidia chinensis HOM05D001876 ORTHO05D002002 3.8e-08 61.6 49 61.2
Aqoxy7G01305 Aquilegia oxysepala HOM05D001876 ORTHO05D002002 5.0e-08 61.2 36 80.6
QL08p001531 Quercus lobata HOM05D001876 ORTHO05D002002 6.5e-08 60.8 56 60.7
Actinidia27240 Actinidia chinensis HOM05D000228 ORTHO05D002002 1.1e-07 60.1 35 85.7
Ah.14g085010 Amaranthus hybridus HOM05D001876 ORTHO05D002002 1.1e-07 60.1 35 85.7
Manes.05G206100 Manihot esculenta HOM05D001876 ORTHO05D002002 1.1e-07 60.1 73 50.7
Pp3c9_4880 Physcomitrium patens HOM05D001876 ORTHO05D002002 1.1e-07 60.1 72 47.2
Gohir.A09G067700 Gossypium hirsutum HOM05D001876 ORTHO05D002002 4.2e-07 58.2 73 47.9
Gorai.006G081900 Gossypium raimondii HOM05D001876 ORTHO05D002002 4.2e-07 58.2 73 47.9
Glyma.08G337200 Glycine max HOM05D001876 ORTHO05D002002 7.2e-07 57.4 43 67.4
RcHm_v2.0_Chr4g0386801 Rosa chinensis HOM05D001876 ORTHO05D002002 1.6e-06 56.2 35 82.9
FAN11G3414 Fragaria x ananassa HOM05D001876 ORTHO05D002002 2.1e-06 55.8 73 50.7
Thecc.07G005200 Theobroma cacao HOM05D001876 ORTHO05D002002 2.1e-06 55.8 73 46.6
FAN21G3992 Fragaria x ananassa HOM05D001876 ORTHO05D002002 6.1e-06 54.3 73 49.3


User provided reference genes

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