Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0386811 Rosa chinensis HOM05D001876 ORTHO05D002002 2.4e-44 181.8 92 100.0
RcHm_v2.0_Chr5g0075171 Rosa chinensis HOM05D001876 ORTHO05D002002 4.0e-15 84.7 49 87.8
Prupe.6G032100 Prunus persica HOM05D001876 ORTHO05D002002 1.2e-14 83.2 56 75.0
MD03G1039800 Malus domestica HOM05D001876 ORTHO05D002002 9.8e-14 80.1 56 71.4
Actinidia30365 Actinidia chinensis HOM05D001876 ORTHO05D002002 1.7e-13 79.3 49 79.6
MD11G1041300 Malus domestica HOM05D001876 ORTHO05D002002 2.2e-13 79.0 56 71.4
Phvul.006G060500 Phaseolus vulgaris HOM05D001876 ORTHO05D002002 4.9e-13 77.8 56 69.6
Actinidia03661 Actinidia chinensis HOM05D001876 ORTHO05D002002 1.1e-12 76.6 56 67.9
Dinv40896 Davidia involucrata HOM05D001876 ORTHO05D002002 2.4e-12 75.5 55 70.9
Sed0017004 Sechium edule HOM05D001876 ORTHO05D002002 3.1e-12 75.1 56 67.9
arahy.Tifrunner.gnm1.ann1.LQ166S Arachis hypogaea HOM05D001876 ORTHO05D002002 4.1e-12 74.7 48 77.1
arahy.Tifrunner.gnm1.ann1.SQBY3A Arachis hypogaea HOM05D001876 ORTHO05D002002 4.1e-12 74.7 48 77.1
Dinv10376 Davidia involucrata HOM05D001876 ORTHO05D002002 4.1e-12 74.7 56 66.1
VMungo0540G1408 Vigna mungo HOM05D001876 ORTHO05D002002 4.1e-12 74.7 52 71.2
Atru.chr2.3845 Acer truncatum HOM05D001876 ORTHO05D002002 5.4e-12 74.3 56 64.3
Sc07g0002250 Simmondsia chinensis HOM05D001876 ORTHO05D002002 5.4e-12 74.3 56 67.9
Lj1A897T44 Lonicera japonica HOM05D001876 ORTHO05D002002 9.2e-12 73.6 56 66.1
arahy.Tifrunner.gnm1.ann1.49CTIT Arachis hypogaea HOM05D001876 ORTHO05D002002 1.2e-11 73.2 48 75.0
TAR626G0018 Trochodendron aralioides HOM05D001876 ORTHO05D002002 1.2e-11 73.2 55 67.3
Ca_14851_v3 Cicer arietinum L. HOM05D001876 ORTHO05D002002 1.6e-11 72.8 48 75.0
Glyma.08G337200 Glycine max HOM05D001876 ORTHO05D002002 1.6e-11 72.8 49 71.4
Medtr3g061160 Medicago truncatula HOM05D001876 ORTHO05D002002 1.6e-11 72.8 79 53.2
Sed0022328 Sechium edule HOM05D001876 ORTHO05D002002 1.6e-11 72.8 56 66.1
TAR629G2148 Trochodendron aralioides HOM05D001876 ORTHO05D002002 1.6e-11 72.8 56 62.5
ClCG10G004140 Citrullus lanatus HOM05D001876 ORTHO05D002002 2.0e-11 72.4 56 66.1
DCAR_013771 Daucus carota HOM05D001876 ORTHO05D002002 2.0e-11 72.4 52 67.3
Oeu026625.1 Olea europaea HOM05D001876 ORTHO05D002002 2.0e-11 72.4 54 70.4
CANSAT11G0621 Cannabis sativa HOM05D001876 ORTHO05D002002 2.7e-11 72.0 55 63.6
Glyma.18G072400 Glycine max HOM05D001876 ORTHO05D002002 2.7e-11 72.0 56 62.5
Gorai.004G034200 Gossypium raimondii HOM05D001876 ORTHO05D002002 3.5e-11 71.6 56 64.3
Cfa016942 Carpinus fangiana HOM05D001876 ORTHO05D002002 4.5e-11 71.2 56 64.3
CiPaw.12G141800 Carya illinoinensis HOM05D001876 ORTHO05D002002 4.5e-11 71.2 56 62.5
Gohir.A08G025700 Gossypium hirsutum HOM05D001876 ORTHO05D002002 4.5e-11 71.2 56 64.3
Gohir.D08G036200 Gossypium hirsutum HOM05D001876 ORTHO05D002002 4.5e-11 71.2 56 64.3
TPR.G17949 Trifolium pratense HOM05D001876 ORTHO05D002002 4.5e-11 71.2 56 62.5
MELO3C014084.2 Cucumis melo HOM05D001876 ORTHO05D002002 5.9e-11 70.9 56 64.3
CsaV3_3G003970 Cucumis sativus L. HOM05D001876 ORTHO05D002002 5.9e-11 70.9 56 64.3
Duzib213G0425 Durio zibethinus HOM05D001876 ORTHO05D002002 5.9e-11 70.9 56 62.5
Nn1g07691 Nelumbo nucifera HOM05D001876 ORTHO05D002002 5.9e-11 70.9 55 63.6
PGR083G0485 Punica granatum HOM05D001876 ORTHO05D002002 5.9e-11 70.9 56 60.7
Haze_09897 Corylus avellana HOM05D001876 ORTHO05D002002 7.8e-11 70.5 56 64.3
Thecc.07G005200 Theobroma cacao HOM05D001876 ORTHO05D002002 7.8e-11 70.5 55 61.8
ATR0751G014 Amborella trichopoda HOM05D001876 ORTHO05D002002 1.0e-10 70.1 54 64.8
Psat5g163240 Pisum sativum HOM05D001876 ORTHO05D002002 1.0e-10 70.1 46 76.1
COL.COLO4_07762 Corchorus olitorius HOM05D001876 ORTHO05D002002 1.3e-10 69.7 55 61.8
Lalb_Chr20g0115301 Lupinus albus HOM05D001876 ORTHO05D002002 1.3e-10 69.7 47 72.3
Nn1g08429 Nelumbo nucifera HOM05D001876 ORTHO05D002002 1.3e-10 69.7 50 68.0
CANSAT56G1356 Cannabis sativa HOM05D001876 ORTHO05D002002 1.7e-10 69.3 55 63.6
Cpa.g.sc12.90 Carica papaya HOM05D001876 ORTHO05D002002 1.7e-10 69.3 56 62.5
Hma1.2p1_0193F.1_g084140 Hydrangea macrophylla HOM05D001876 ORTHO05D002002 1.7e-10 69.3 56 58.9
Hma1.2p1_2995F.1_g331450 Hydrangea macrophylla HOM05D001876 ORTHO05D002002 1.7e-10 69.3 56 58.9
RcHm_v2.0_Chr4g0407801 Rosa chinensis HOM05D000005 ORTHO05D000012 1.7e-10 69.3 56 69.6
Dinv06828 Davidia involucrata HOM05D001876 ORTHO05D002002 2.3e-10 68.9 55 61.8
SalBow8G1221 Salvia bowleyana HOM05D001876 ORTHO05D002002 2.3e-10 68.9 50 70.0
SalBow8G5543 Salvia bowleyana HOM05D001876 ORTHO05D002002 2.3e-10 68.9 50 70.0
Solyc10g005920.4 Solanum lycopersicum HOM05D001876 ORTHO05D002002 2.3e-10 68.9 56 60.7
Sopen07g034150 Solanum pennellii HOM05D001876 ORTHO05D002002 2.3e-10 68.9 56 62.5
MSTRG.14512 Avicennia marina HOM05D001876 ORTHO05D002002 2.9e-10 68.6 54 63.0
Duzib268G1004 Durio zibethinus HOM05D001876 ORTHO05D002002 2.9e-10 68.6 56 60.7
Eucgr.F02007 Eucalyptus grandis HOM05D001876 ORTHO05D002002 2.9e-10 68.6 56 60.7
Medtr2g027690 Medicago truncatula HOM05D001876 ORTHO05D002002 2.9e-10 68.6 55 63.6
Cpa.g.sc27.194 Carica papaya HOM05D001876 ORTHO05D002002 3.8e-10 68.2 80 47.5
Ciclev10007261m.g Citrus clementina HOM05D001876 ORTHO05D002002 3.8e-10 68.2 56 58.9
QL08p001531 Quercus lobata HOM05D001876 ORTHO05D002002 3.8e-10 68.2 56 62.5
arahy.Tifrunner.gnm1.ann1.ADA7T8 Arachis hypogaea HOM05D001876 ORTHO05D002002 5.0e-10 67.8 48 68.8
Nitab4.5_0000611g0240 Nicotiana tabacum HOM05D001876 ORTHO05D002002 5.0e-10 67.8 56 62.5
Nitab4.5_0001622g0060 Nicotiana tabacum HOM05D001876 ORTHO05D002002 5.0e-10 67.8 56 62.5
Hund01842 Selenicereus undatus HOM05D001876 ORTHO05D002002 5.0e-10 67.8 56 64.3
TPR.G10492 Trifolium pratense HOM05D001876 ORTHO05D002002 5.0e-10 67.8 47 70.2
TWI63G1743 Tripterygium wilfordii HOM05D001876 ORTHO05D002002 5.0e-10 67.8 55 61.8
GSVIVG01006976001 Vitis vinifera HOM05D001876 ORTHO05D002002 5.0e-10 67.8 47 68.1
Manes.01G005000 Manihot esculenta HOM05D001876 ORTHO05D002002 6.6e-10 67.4 56 62.5
Gohir.A09G067700 Gossypium hirsutum HOM05D001876 ORTHO05D002002 8.6e-10 67.0 62 54.8
Gohir.D09G067400 Gossypium hirsutum HOM05D001876 ORTHO05D002002 8.6e-10 67.0 62 54.8
Gorai.006G081900 Gossypium raimondii HOM05D001876 ORTHO05D002002 8.6e-10 67.0 62 54.8
Psat1g171600 Pisum sativum HOM05D001876 ORTHO05D002002 8.6e-10 67.0 51 64.7
Sed0006897 Sechium edule HOM05D001876 ORTHO05D002002 8.6e-10 67.0 56 58.9
Ciclev10014046m.g Citrus clementina HOM05D001876 ORTHO05D002002 1.1e-09 66.6 55 60.0
Duzib170G0551 Durio zibethinus HOM05D001876 ORTHO05D002002 1.1e-09 66.6 56 57.1
Lalb_Chr15g0088371 Lupinus albus HOM05D001876 ORTHO05D002002 1.1e-09 66.6 48 68.8
TWI39G0122 Tripterygium wilfordii HOM05D001876 ORTHO05D002002 1.1e-09 66.6 56 58.9
GSVIVG01014783001 Vitis vinifera HOM05D001876 ORTHO05D002002 1.1e-09 66.6 56 58.9
Lj6g0010416 Lotus japonicus HOM05D001876 ORTHO05D002002 1.5e-09 66.2 47 66.0
Lj6g0025458 Lotus japonicus HOM05D001876 ORTHO05D002002 1.5e-09 66.2 55 58.2
Manes.08G015400 Manihot esculenta HOM05D001876 ORTHO05D002002 1.5e-09 66.2 55 58.2
Potri.016G002100 Populus trichocarpa HOM05D001876 ORTHO05D002002 1.5e-09 66.2 55 56.4
QL05p066377 Quercus lobata HOM05D001876 ORTHO05D002002 1.5e-09 66.2 55 60.0
HPP92_015744 Vanilla planifolia HOM05D001876 ORTHO05D002002 1.5e-09 66.2 54 61.1
Actinidia10583 Actinidia chinensis HOM05D001876 ORTHO05D002002 1.9e-09 65.9 53 64.2
Lalb_Chr18g0057511 Lupinus albus HOM05D001876 ORTHO05D002002 1.9e-09 65.9 47 66.0
Nitab4.5_0000152g0190 Nicotiana tabacum HOM05D001876 ORTHO05D002002 1.9e-09 65.9 52 65.4
Nitab4.5_0001303g0100 Nicotiana tabacum HOM05D001876 ORTHO05D002002 1.9e-09 65.9 52 65.4
Peaxi162Scf00232g00036 Petunia axillaris HOM05D001876 ORTHO05D002002 1.9e-09 65.9 50 66.0
Potri.001G469500 Populus trichocarpa HOM05D001876 ORTHO05D002002 1.9e-09 65.9 56 57.1
Sabra16G0318400 Salix brachista HOM05D001876 ORTHO05D002002 1.9e-09 65.9 70 52.9
Sopen10g001880 Solanum pennellii HOM05D001876 ORTHO05D002002 1.9e-09 65.9 52 61.5
Atru.chr1.2235 Acer truncatum HOM05D001876 ORTHO05D002002 3.3e-09 65.1 46 67.4
Manes.09G072500 Manihot esculenta HOM05D001876 ORTHO05D002002 3.3e-09 65.1 45 68.9
PGR083G1788 Punica granatum HOM05D001876 ORTHO05D002002 3.3e-09 65.1 56 57.1
Cc05_g15500 Coffea canephora HOM05D001876 ORTHO05D002002 4.3e-09 64.7 46 69.6
COL.COLO4_31961 Corchorus olitorius HOM05D001876 ORTHO05D002002 4.3e-09 64.7 55 58.2
Lalb_Chr20g0119661 Lupinus albus HOM05D001876 ORTHO05D002002 4.3e-09 64.7 47 68.1
Sabra06G0001500 Salix brachista HOM05D001876 ORTHO05D002002 4.3e-09 64.7 46 63.0
Sabra16G0007100 Salix brachista HOM05D001876 ORTHO05D002002 4.3e-09 64.7 55 54.5
TAR627G0307 Trochodendron aralioides HOM05D001876 ORTHO05D002002 4.3e-09 64.7 45 71.1
CSS0030826 Camellia sinensis var. sinensis HOM05D001876 ORTHO05D002002 5.6e-09 64.3 42 76.2
Glyma.09G016800 Glycine max HOM05D001876 ORTHO05D002002 5.6e-09 64.3 46 67.4
Gorai.006G081700 Gossypium raimondii HOM05D001876 ORTHO05D002002 5.6e-09 64.3 55 58.2
MBI15_g00880_MAGBIO Magnolia biondii HOM05D001876 ORTHO05D002002 5.6e-09 64.3 53 58.5
Oeu005542.2 Olea europaea HOM05D001876 ORTHO05D002002 5.6e-09 64.3 54 63.0
Phvul.006G135300 Phaseolus vulgaris HOM05D001876 ORTHO05D002002 5.6e-09 64.3 55 58.2
PGR004G0187 Punica granatum HOM05D001876 ORTHO05D002002 5.6e-09 64.3 55 56.4
Sc20g0000100 Simmondsia chinensis HOM05D001876 ORTHO05D002002 5.6e-09 64.3 55 65.5
VMungo0540G0459 Vigna mungo HOM05D001876 ORTHO05D002002 5.6e-09 64.3 46 67.4
Cfa000007 Carpinus fangiana HOM05D001876 ORTHO05D002002 7.3e-09 63.9 55 58.2
HPP92_017870 Vanilla planifolia HOM05D001876 ORTHO05D002002 7.3e-09 63.9 54 59.3
arahy.Tifrunner.gnm1.ann1.EXSC1B Arachis hypogaea HOM05D001876 ORTHO05D002002 9.5e-09 63.5 55 54.5
arahy.Tifrunner.gnm1.ann1.M7DLA2 Arachis hypogaea HOM05D001876 ORTHO05D002002 9.5e-09 63.5 55 54.5
Gohir.A09G067600 Gossypium hirsutum HOM05D001876 ORTHO05D002002 9.5e-09 63.5 55 58.2
TWI38G1429 Tripterygium wilfordii HOM05D001876 ORTHO05D002002 9.5e-09 63.5 56 57.1
Gohir.D09G067300 Gossypium hirsutum HOM05D001876 ORTHO05D002002 1.2e-08 63.2 62 51.6
MBI14_g30654_MAGBIO Magnolia biondii HOM05D001876 ORTHO05D002002 1.2e-08 63.2 53 60.4
Mapoly0037s0026 Marchantia polymorpha HOM05D001876 ORTHO05D002002 1.2e-08 63.2 72 47.2
Dinv04380 Davidia involucrata HOM05D001876 ORTHO05D002002 1.6e-08 62.8 51 60.8
Thecc.06G243400 Theobroma cacao HOM05D001876 ORTHO05D002002 1.6e-08 62.8 55 54.5
Duzib192G0376 Durio zibethinus HOM05D001876 ORTHO05D002002 2.1e-08 62.4 55 54.5
FAN21G2243 Fragaria x ananassa HOM05D001876 ORTHO05D002002 2.1e-08 62.4 46 65.2
Oeu062674.2 Olea europaea HOM05D001876 ORTHO05D002002 2.1e-08 62.4 54 61.1
SGA_v2.0_scaffold42G15938 Striga asiatica HOM05D001876 ORTHO05D002002 2.8e-08 62.0 54 57.4
CiPaw.09G112100 Carya illinoinensis HOM05D001876 ORTHO05D002002 3.6e-08 61.6 55 56.4
Haze_07052 Corylus avellana HOM05D001876 ORTHO05D002002 3.6e-08 61.6 55 56.4
Migut.H01726 Erythranthe guttata HOM05D001876 ORTHO05D002002 3.6e-08 61.6 54 59.3
Os06g0300800 Oryza sativa ssp. japonica HOM05D001876 ORTHO05D002002 3.6e-08 61.6 72 47.2
SGA_v2.0_scaffold8G04429 Striga asiatica HOM05D001876 ORTHO05D002002 3.6e-08 61.6 45 66.7
Duzib235G0083 Durio zibethinus HOM05D001876 ORTHO05D002002 4.7e-08 61.2 55 54.5
Manes.05G206100 Manihot esculenta HOM05D001876 ORTHO05D002002 4.7e-08 61.2 55 56.4
THA.LOC104815682 Tarenaya hassleriana HOM05D001876 ORTHO05D002002 4.7e-08 61.2 46 65.2
DCAR_017598 Daucus carota HOM05D001876 ORTHO05D002002 6.1e-08 60.8 56 55.4
FAN11G3885 Fragaria x ananassa HOM05D001876 ORTHO05D002002 6.1e-08 60.8 41 70.7
FAN16G1749 Fragaria x ananassa HOM05D001876 ORTHO05D002002 6.1e-08 60.8 41 70.7
FAN25G1930 Fragaria x ananassa HOM05D001876 ORTHO05D002002 6.1e-08 60.8 41 70.7
Peaxi162Scf00006g00717 Petunia axillaris HOM05D001876 ORTHO05D002002 6.1e-08 60.8 54 55.6
PGR083G1548 Punica granatum HOM05D001067 ORTHO05D000876 1.0e-07 60.1 50 58.0
Rhsim04G0009400 Rhododendron simsii HOM05D001876 ORTHO05D002002 1.0e-07 60.1 54 57.4
Rhsim06G0234000 Rhododendron simsii HOM05D001876 ORTHO05D002002 1.0e-07 60.1 48 68.8
CDE10G0998 Ceratophyllum demersum HOM05D001876 ORTHO05D002002 1.4e-07 59.7 54 55.6
HanXRQChr11g0334581 Helianthus annuus HOM05D001876 ORTHO05D002002 1.4e-07 59.7 54 59.3
Migut.H01727 Erythranthe guttata HOM05D001876 ORTHO05D002002 1.8e-07 59.3 41 70.7
FvH4_3g41980 Fragaria vesca HOM05D001876 ORTHO05D002002 1.8e-07 59.3 41 68.3
Glyma.15G122400 Glycine max HOM05D001876 ORTHO05D002002 1.8e-07 59.3 44 63.6
Potri.011G166400 Populus trichocarpa HOM05D001876 ORTHO05D002002 1.8e-07 59.3 56 57.1
MBI15_g41024_MAGBIO Magnolia biondii HOM05D001876 ORTHO05D002002 2.3e-07 58.9 53 56.6
PGR083G2540 Punica granatum HOM05D001876 ORTHO05D002002 2.3e-07 58.9 40 70.0
AUR62035638 Chenopodium quinoa HOM05D001876 ORTHO05D002002 3.0e-07 58.5 56 57.1
HanXRQChr03g0077781 Helianthus annuus HOM05D001876 ORTHO05D002002 3.0e-07 58.5 45 64.4
MBI15_g35676_MAGBIO Magnolia biondii HOM05D001876 ORTHO05D002002 3.0e-07 58.5 53 54.7
Os02g0722800 Oryza sativa ssp. japonica HOM05D001876 ORTHO05D002002 3.0e-07 58.5 45 62.2
Potri.006G001400 Populus trichocarpa HOM05D001876 ORTHO05D002002 3.0e-07 58.5 46 60.9
CDE10G0783 Ceratophyllum demersum HOM05D001876 ORTHO05D002002 4.0e-07 58.2 44 59.1
Eucgr.E04228 Eucalyptus grandis HOM05D001876 ORTHO05D002002 4.0e-07 58.2 55 54.5
THA.LOC104822709 Tarenaya hassleriana HOM05D001876 ORTHO05D002002 4.0e-07 58.2 46 63.0
EL10Ac4g07507 Beta vulgaris HOM05D001876 ORTHO05D002002 5.2e-07 57.8 56 53.6
ECA240G3156 Erigeron canadensis HOM05D001876 ORTHO05D002002 5.2e-07 57.8 45 62.2
Pp3c15_3440 Physcomitrium patens HOM05D001876 ORTHO05D002002 5.2e-07 57.8 50 56.0
Pp3c15_3450 Physcomitrium patens HOM05D001876 ORTHO05D002002 5.2e-07 57.8 50 56.0
AagrBONN_evm.TU.Sc2ySwM_228.5719 Anthoceros agrestis HOM05D001876 ORTHO05D000003 6.8e-07 57.4 55 47.3
SEGI_32915 Sequoiadendron giganteum HOM05D001876 ORTHO05D002002 6.8e-07 57.4 46 58.7
Ah.14g085010 Amaranthus hybridus HOM05D001876 ORTHO05D002002 1.2e-06 56.6 56 53.6
RcHm_v2.0_Chr4g0389201 Rosa chinensis HOM05D001876 ORTHO05D002002 1.2e-06 56.6 47 63.8
THA.LOC104810297 Tarenaya hassleriana HOM05D001876 ORTHO05D002002 1.2e-06 56.6 44 65.9
Sp3g11500 Schrenkiella parvula HOM05D001876 ORTHO05D002002 2.0e-06 55.8 56 53.6
vmacro11629 Vaccinium macrocarpon HOM05D001876 ORTHO05D002002 2.0e-06 55.8 51 62.7
Pp3c9_4880 Physcomitrium patens HOM05D001876 ORTHO05D002002 2.6e-06 55.5 68 45.6
AL3G25110 Arabidopsis lyrata HOM05D001876 ORTHO05D002002 3.4e-06 55.1 46 60.9
CiPaw.10G084200 Carya illinoinensis HOM05D001876 ORTHO05D002002 3.4e-06 55.1 55 50.9
AT3G13290 Arabidopsis thaliana HOM05D001876 ORTHO05D002002 4.4e-06 54.7 46 60.9
MBI11_g40896_MAGBIO Magnolia biondii HOM05D001876 ORTHO05D002002 4.4e-06 54.7 44 59.1
SEGI_22382 Sequoiadendron giganteum HOM05D001876 ORTHO05D002002 4.4e-06 54.7 54 50.0
Thhalv10019901m.g Eutrema salsugineum HOM05D001876 ORTHO05D002002 5.7e-06 54.3 46 60.9
unitig_578.g16308 Utricularia gibba HOM05D001876 ORTHO05D002002 5.7e-06 54.3 47 53.2
vmacro09608 Vaccinium macrocarpon HOM05D001876 ORTHO05D002002 7.5e-06 53.9 54 51.9


User provided reference genes

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