Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0493071 Rosa chinensis HOM05D001051 ORTHO05D000886 4.5e-55 217.6 105 100.0
RcHm_v2.0_Chr5g0068911 Rosa chinensis HOM05D001051 ORTHO05D000886 1.5e-39 166.0 93 89.2
RcHm_v2.0_Chr5g0037591 Rosa chinensis HOM05D001051 ORTHO05D000886 3.4e-39 164.9 89 89.9
RcHm_v2.0_Chr6g0299051 Rosa chinensis HOM05D001051 ORTHO05D000886 3.4e-39 164.9 96 83.3
RcHm_v2.0_Chr5g0033381 Rosa chinensis HOM05D001051 ORTHO05D000886 7.9e-36 153.7 96 79.2
Prupe.1G398700 Prunus persica HOM05D001051 ORTHO05D000886 3.0e-27 125.2 107 61.7
MD08G1049600 Malus domestica HOM05D001051 ORTHO05D000886 1.1e-26 123.2 108 62.0
FvH4_2g41420 Fragaria vesca HOM05D001051 ORTHO05D000886 7.5e-26 120.6 95 68.4
FAN15G2836 Fragaria x ananassa HOM05D001051 ORTHO05D000886 7.5e-26 120.6 95 68.4
Cpa.g.sc1332.1 Carica papaya HOM05D001051 ORTHO05D000886 2.8e-25 118.6 108 59.3
COL.COLO4_18994 Corchorus olitorius HOM05D001051 ORTHO05D000886 3.7e-25 118.2 107 58.9
FAN27G0994 Fragaria x ananassa HOM05D001051 ORTHO05D000886 4.8e-25 117.9 95 67.4
Thecc.09G011100 Theobroma cacao HOM05D001051 ORTHO05D000886 4.8e-25 117.9 107 57.9
Cfa013008 Carpinus fangiana HOM05D001051 ORTHO05D000886 6.3e-25 117.5 109 57.8
Gohir.A05G062400 Gossypium hirsutum HOM05D001051 ORTHO05D000886 1.8e-24 115.9 107 57.9
Haze_21368 Corylus avellana HOM05D001051 ORTHO05D000886 3.1e-24 115.2 110 56.4
Haze_21369 Corylus avellana HOM05D001051 ORTHO05D000886 3.1e-24 115.2 110 56.4
QL02p017987 Quercus lobata HOM05D001051 ORTHO05D000886 1.2e-23 113.2 107 55.1
MD15G1045000 Malus domestica HOM05D001051 ORTHO05D000886 3.5e-23 111.7 107 57.9
Gohir.D05G064900 Gossypium hirsutum HOM05D001051 ORTHO05D000886 4.5e-23 111.3 107 56.1
Duzib168G1474 Durio zibethinus HOM05D001051 ORTHO05D000886 5.9e-23 110.9 107 55.1
Atru.chr7.2602 Acer truncatum HOM05D001051 ORTHO05D000886 7.7e-23 110.5 106 57.5
Gorai.009G065600 Gossypium raimondii HOM05D001051 ORTHO05D000886 7.7e-23 110.5 107 56.1
Duzib150G0335 Durio zibethinus HOM05D001051 ORTHO05D000886 2.9e-22 108.6 106 55.7
Manes.16G133200 Manihot esculenta HOM05D001051 ORTHO05D000886 2.9e-22 108.6 110 57.3
Duzib187G0898 Durio zibethinus HOM05D001051 ORTHO05D000886 6.5e-22 107.5 107 54.2
CiPaw.08G004200 Carya illinoinensis HOM05D001051 ORTHO05D000886 1.5e-21 106.3 121 50.4
Gohir.A13G178800 Gossypium hirsutum HOM05D001051 ORTHO05D000886 1.9e-21 105.9 112 55.4
Gohir.D13G186900 Gossypium hirsutum HOM05D001051 ORTHO05D000886 5.5e-21 104.4 112 55.4
Gorai.010G245200 Gossypium raimondii HOM05D001051 ORTHO05D000886 2.1e-20 102.4 112 54.5
ClCG08G013860 Citrullus lanatus HOM05D001051 ORTHO05D000886 2.7e-20 102.1 106 52.8
Ciclev10008813m.g Citrus clementina HOM05D001051 ORTHO05D000886 1.8e-19 99.4 110 53.6
RcHm_v2.0_Chr4g0429741 Rosa chinensis HOM05D001051 ORTHO05D000886 4.0e-19 98.2 48 93.8
CsaV3_2G032640 Cucumis sativus L. HOM05D001051 ORTHO05D000886 3.4e-18 95.1 107 50.5
TWI34G0834 Tripterygium wilfordii HOM05D001051 ORTHO05D000886 1.7e-17 92.8 107 55.1
MELO3C011317.2 Cucumis melo HOM05D001051 ORTHO05D000886 2.8e-17 92.0 107 49.5
THA.LOC104803328 Tarenaya hassleriana HOM05D001051 ORTHO05D000886 4.1e-16 88.2 99 50.5
GSVIVG01036037001 Vitis vinifera HOM05D001051 ORTHO05D000886 4.1e-16 88.2 95 49.5
CANSAT25G0698 Cannabis sativa HOM05D001051 ORTHO05D000886 9.1e-16 87.0 108 51.9
TWI32G1078 Tripterygium wilfordii HOM05D001051 ORTHO05D000886 1.6e-15 86.3 103 52.4
Manes.03G006000 Manihot esculenta HOM05D001051 ORTHO05D000886 4.5e-15 84.7 102 51.0
Glyma.06G059600 Glycine max HOM05D001051 ORTHO05D000886 7.7e-15 84.0 105 50.5
CiPaw.07G233300 Carya illinoinensis HOM05D001051 ORTHO05D000886 1.0e-14 83.6 111 45.0
Thhalv10004744m.g Eutrema salsugineum HOM05D001051 ORTHO05D000886 1.7e-14 82.8 115 47.0
THA.LOC104814980 Tarenaya hassleriana HOM05D001051 ORTHO05D000886 1.7e-14 82.8 98 48.0
Glyma.04G058900 Glycine max HOM05D001051 ORTHO05D000886 2.2e-14 82.4 98 54.1
Sp2g22520 Schrenkiella parvula HOM05D001051 ORTHO05D000886 2.2e-14 82.4 115 46.1
Potri.018G013800 Populus trichocarpa HOM05D001051 ORTHO05D000886 2.9e-14 82.0 117 51.3
Dinv23726 Davidia involucrata HOM05D001051 ORTHO05D000886 3.8e-14 81.6 121 42.1
Aa31LG11G4130 Aethionema arabicum HOM05D001051 ORTHO05D000886 6.5e-14 80.9 106 44.3
CARHR188510 Cardamine hirsuta HOM05D001051 ORTHO05D000886 4.2e-13 78.2 106 46.2
Phvul.009G085300 Phaseolus vulgaris HOM05D001051 ORTHO05D000886 5.5e-13 77.8 89 55.1
TAR383G0207 Trochodendron aralioides HOM05D001051 ORTHO05D000886 5.5e-13 77.8 103 46.6
SalBow4G1791 Salvia bowleyana HOM05D001051 ORTHO05D000886 9.5e-13 77.0 120 39.2
arahy.Tifrunner.gnm1.ann1.B9QMIW Arachis hypogaea HOM05D001051 ORTHO05D000886 1.6e-12 76.3 87 52.9
arahy.Tifrunner.gnm1.ann1.ZS9VWH Arachis hypogaea HOM05D001051 ORTHO05D000886 4.7e-12 74.7 87 51.7
CSS0018089 Camellia sinensis var. sinensis HOM05D001051 ORTHO05D000886 4.7e-12 74.7 114 41.2
VMungo1309G0098 Vigna mungo HOM05D001051 ORTHO05D000886 8.0e-12 73.9 89 51.7
Nn8g40382 Nelumbo nucifera HOM05D001051 ORTHO05D000886 1.0e-11 73.6 111 45.0
Gohir.D07G037800 Gossypium hirsutum HOM05D001051 ORTHO05D000886 2.3e-11 72.4 110 42.7
Sed0001333 Sechium edule HOM05D001051 ORTHO05D000886 2.3e-11 72.4 79 48.1
Gohir.A07G034300 Gossypium hirsutum HOM05D001051 ORTHO05D000886 3.0e-11 72.0 103 43.7
Nn2g12633 Nelumbo nucifera HOM05D001051 ORTHO05D000886 3.0e-11 72.0 110 43.6
Potri.006G267700 Populus trichocarpa HOM05D001051 ORTHO05D000886 3.0e-11 72.0 117 44.4
Sabra06G0209900 Salix brachista HOM05D001051 ORTHO05D000886 4.0e-11 71.6 116 46.6
AT5G24930 Arabidopsis thaliana HOM05D001051 ORTHO05D000886 6.8e-11 70.9 87 50.6
TPR.G38832 Trifolium pratense HOM05D001051 ORTHO05D000886 8.8e-11 70.5 104 41.3
AL6G36600 Arabidopsis lyrata HOM05D001051 ORTHO05D000886 1.2e-10 70.1 84 51.2
MSTRG.1621 Avicennia marina HOM05D001051 ORTHO05D000886 1.5e-10 69.7 120 36.7
Lsat_1_v5_gn_5_51381 Lactuca sativa HOM05D001051 ORTHO05D000886 1.5e-10 69.7 119 35.3
MSTRG.13953 Avicennia marina HOM05D001051 ORTHO05D000886 2.0e-10 69.3 119 36.1
Carub.0006s2280 Capsella rubella HOM05D001051 ORTHO05D000886 2.0e-10 69.3 94 46.8
Gorai.001G039500 Gossypium raimondii HOM05D001051 ORTHO05D000886 2.6e-10 68.9 110 41.8
Actinidia06448 Actinidia chinensis HOM05D001051 ORTHO05D000886 4.4e-10 68.2 111 39.6
GSVIVG01029107001 Vitis vinifera HOM05D001051 ORTHO05D000886 4.4e-10 68.2 104 40.4
Psat6g025680 Pisum sativum HOM05D001051 ORTHO05D000886 5.7e-10 67.8 104 42.3
A06p35720 Brassica napus HOM05D001051 ORTHO05D000886 7.5e-10 67.4 113 42.5
C07p42820 Brassica napus HOM05D001051 ORTHO05D000886 7.5e-10 67.4 113 42.5
BraA06t26496Z Brassica rapa HOM05D001051 ORTHO05D000886 7.5e-10 67.4 113 42.5
SGA_v2.0_scaffold193G40690 Striga asiatica HOM05D001051 ORTHO05D000886 9.8e-10 67.0 120 35.0
TAR625G1493 Trochodendron aralioides HOM05D001051 ORTHO05D000886 9.8e-10 67.0 106 40.6
C09p07040 Brassica napus HOM05D001051 ORTHO05D000886 1.3e-09 66.6 110 43.6
Haze_22137 Corylus avellana HOM05D001051 ORTHO05D000886 2.2e-09 65.9 108 38.0
THA.LOC104819945 Tarenaya hassleriana HOM05D001051 ORTHO05D000886 2.2e-09 65.9 68 54.4
CAN.G566.55 Capsicum annuum HOM05D001051 ORTHO05D000886 4.9e-09 64.7 115 35.7
Cc08_g06390 Coffea canephora HOM05D001051 ORTHO05D000886 8.3e-09 63.9 119 36.1
PGR031G1305 Punica granatum HOM05D001051 ORTHO05D000886 1.1e-08 63.5 74 50.0
MSTRG.11797 Avicennia marina HOM05D001051 ORTHO05D000886 1.4e-08 63.2 119 37.8
Eucgr.C01876 Eucalyptus grandis HOM05D001051 ORTHO05D000886 1.4e-08 63.2 103 44.7
BcaC04g23566 Brassica carinata HOM05D001051 ORTHO05D000886 1.8e-08 62.8 108 39.8
BolC9t53620H Brassica oleracea HOM05D001051 ORTHO05D000886 1.8e-08 62.8 108 39.8
Nitab4.5_0001110g0140 Nicotiana tabacum HOM05D001051 ORTHO05D000886 1.8e-08 62.8 107 34.6
Nn3g21420 Nelumbo nucifera HOM05D001051 ORTHO05D000886 2.4e-08 62.4 107 40.2
Peaxi162Scf00459g00510 Petunia axillaris HOM05D001051 ORTHO05D000886 2.4e-08 62.4 128 31.2
Nitab4.5_0002912g0030 Nicotiana tabacum HOM05D001051 ORTHO05D000886 3.1e-08 62.0 107 34.6
A09p06350 Brassica napus HOM05D001051 ORTHO05D000886 4.1e-08 61.6 108 38.0
Cfa013529 Carpinus fangiana HOM05D001051 ORTHO05D000886 5.4e-08 61.2 108 36.1
Lj5g0011349 Lotus japonicus HOM05D001051 ORTHO05D000886 5.4e-08 61.2 106 35.8
Oeu048536.1 Olea europaea HOM05D001051 ORTHO05D000886 5.4e-08 61.2 120 34.2
unitig_747.g21386 Utricularia gibba HOM05D001051 ORTHO05D000886 7.0e-08 60.8 126 34.9
BraA09t36280Z Brassica rapa HOM05D001051 ORTHO05D000886 9.2e-08 60.5 114 38.6
Nn1g03394 Nelumbo nucifera HOM05D001051 ORTHO05D000886 9.2e-08 60.5 74 47.3
Nn7g36672 Nelumbo nucifera HOM05D001051 ORTHO05D000886 9.2e-08 60.5 79 43.0
BolC7t44810H Brassica oleracea HOM05D001051 ORTHO05D000886 1.2e-07 60.1 116 39.7
Migut.A00403 Erythranthe guttata HOM05D001051 ORTHO05D000886 1.2e-07 60.1 122 36.9
Solyc12g096500.2 Solanum lycopersicum HOM05D001051 ORTHO05D000886 1.2e-07 60.1 109 32.1
Sopen12g032330 Solanum pennellii HOM05D001051 ORTHO05D000886 1.2e-07 60.1 109 32.1
MBI14_g37766_MAGBIO Magnolia biondii HOM05D001051 ORTHO05D000886 1.6e-07 59.7 73 47.9
SalBow8G1524 Salvia bowleyana HOM05D001051 ORTHO05D000886 1.6e-07 59.7 117 35.9
BcaB04g19806 Brassica carinata HOM05D001051 ORTHO05D000886 2.0e-07 59.3 80 45.0
Migut.E01434 Erythranthe guttata HOM05D001051 ORTHO05D000886 2.7e-07 58.9 126 31.0
MBI16_g00675_MAGBIO Magnolia biondii HOM05D001051 ORTHO05D000886 2.7e-07 58.9 78 43.6
SalBow8G2867 Salvia bowleyana HOM05D001051 ORTHO05D000886 2.7e-07 58.9 117 35.9
Aqoxy7G03177 Aquilegia oxysepala HOM05D001051 ORTHO05D000886 3.5e-07 58.5 70 50.0
Lalb_Chr23g0268111 Lupinus albus HOM05D001051 ORTHO05D000886 4.5e-07 58.2 103 38.8
Prupe.1G019200 Prunus persica HOM05D001051 ORTHO05D000886 4.5e-07 58.2 49 61.2
PGSC0003DMG400029365 Solanum tuberosum HOM05D001051 ORTHO05D000886 4.5e-07 58.2 110 31.8
Oeu014161.1 Olea europaea HOM05D001051 ORTHO05D000886 5.9e-07 57.8 127 37.0
Lalb_Chr08g0244561 Lupinus albus HOM05D001051 ORTHO05D000886 1.3e-06 56.6 89 38.2
Nn8g40062 Nelumbo nucifera HOM05D001051 ORTHO05D000886 1.3e-06 56.6 75 44.0
Lj7A741T44 Lonicera japonica HOM05D001051 ORTHO05D000886 1.7e-06 56.2 116 36.2
PGSC0003DMG400006387 Solanum tuberosum HOM05D001051 ORTHO05D000886 2.9e-06 55.5 107 32.7
Thhalv10000258m.g Eutrema salsugineum HOM05D001051 ORTHO05D000886 3.8e-06 55.1 79 44.3
Nn3g18761 Nelumbo nucifera HOM05D001051 ORTHO05D000886 3.8e-06 55.1 64 46.9
ATR0580G367 Amborella trichopoda HOM05D001051 ORTHO05D000886 5.0e-06 54.7 99 36.4
CiPaw.07G188700 Carya illinoinensis HOM05D001051 ORTHO05D000886 6.6e-06 54.3 108 34.3


User provided reference genes

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