Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0486211 Rosa chinensis HOM05D003406 ORTHO05D004026 9.0e-109 397.5 299 100.0
RcHm_v2.0_Chr4g0404661 Rosa chinensis HOM05D003406 ORTHO05D004026 3.8e-75 285.8 280 88.9
RcHm_v2.0_Chr3g0482821 Rosa chinensis HOM05D003406 ORTHO05D004026 8.0e-65 251.5 130 91.5
RcHm_v2.0_Chr3g0482981 Rosa chinensis HOM05D003406 ORTHO05D004026 8.0e-65 251.5 130 91.5
FAN09G0535 Fragaria x ananassa HOM05D003406 ORTHO05D004026 2.6e-63 246.5 304 69.4
FvH4_6g22190 Fragaria vesca HOM05D003406 ORTHO05D004026 2.5e-50 203.4 319 39.2
RcHm_v2.0_Chr5g0010661 Rosa chinensis HOM05D003406 ORTHO05D004026 5.2e-48 195.7 135 71.1
FAN14G5538 Fragaria x ananassa HOM05D003406 ORTHO05D004026 8.9e-48 194.9 306 39.5
unitig_26.g9605 Utricularia gibba HOM05D003406 ORTHO05D004026 3.1e-45 186.4 286 48.3
FAN23G2061 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.2e-44 184.5 306 37.6
Sabra01G0019600 Salix brachista HOM05D003406 ORTHO05D004026 2.7e-44 183.3 329 48.6
CDE04G3459 Ceratophyllum demersum HOM05D003406 ORTHO05D004026 5.6e-42 175.6 284 64.8
FvH4_5g25490 Fragaria vesca HOM05D003406 ORTHO05D004026 8.0e-41 171.8 306 66.7
FvH4_5g25550 Fragaria vesca HOM05D003406 ORTHO05D004026 8.0e-41 171.8 306 66.7
FAN28G2604 Fragaria x ananassa HOM05D003406 ORTHO05D004026 8.0e-41 171.8 135 63.7
FAN06G4607 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.4e-40 171.0 270 58.5
FAN13G0969 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.4e-40 171.0 135 62.2
FAN18G4486 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.4e-40 171.0 135 61.5
FAN26G1924 Fragaria x ananassa HOM05D003406 ORTHO05D004026 4.4e-39 166.0 135 62.2
FAN19G0629 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.3e-38 164.5 135 61.5
Actinidia10165 Actinidia chinensis HOM05D003406 ORTHO05D004026 6.4e-38 162.2 303 35.6
Dinv09276 Davidia involucrata HOM05D003406 ORTHO05D004026 6.0e-36 155.6 267 37.1
FvH4_7g02880 Fragaria vesca HOM05D003406 ORTHO05D004026 6.0e-36 155.6 137 62.0
FAN03G3378 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.7e-35 154.1 137 62.0
RcHm_v2.0_Chr1g0323831 Rosa chinensis HOM05D003406 ORTHO05D004026 2.3e-35 153.7 137 62.0
Peaxi162Scf00341g00714 Petunia axillaris HOM05D003406 ORTHO05D004026 3.0e-35 153.3 284 59.5
Prupe.2G034300 Prunus persica HOM05D003406 ORTHO05D004026 5.6e-34 149.1 137 58.4
MD02G1288700 Malus domestica HOM05D003406 ORTHO05D004026 9.5e-34 148.3 143 56.6
MD07G1038200 Malus domestica HOM05D003406 ORTHO05D004026 3.6e-33 146.4 143 55.9
AagrBONN_evm.TU.Sc2ySwM_369.461 Anthoceros agrestis HOM05D003406 ORTHO05D004026 8.0e-33 145.2 297 45.8
arahy.Tifrunner.gnm1.ann1.07MYST Arachis hypogaea HOM05D003406 ORTHO05D004026 8.0e-33 145.2 269 61.3
SHI03990 Sapria himalayana HOM05D003406 ORTHO05D004026 1.4e-32 144.4 250 52.8
CiPaw.14G007200 Carya illinoinensis HOM05D003406 ORTHO05D004026 5.2e-32 142.5 143 53.1
Gohir.D10G190800 Gossypium hirsutum HOM05D003406 ORTHO05D004026 5.2e-32 142.5 138 54.3
Gorai.011G213900 Gossypium raimondii HOM05D003406 ORTHO05D004026 5.2e-32 142.5 138 54.3
Gohir.A10G183800 Gossypium hirsutum HOM05D003406 ORTHO05D004026 8.9e-32 141.7 138 54.3
FAN06G0645 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.5e-31 141.0 227 68.3
Ciclev10004445m.g Citrus clementina HOM05D003406 ORTHO05D004026 2.6e-31 140.2 143 53.1
Hund13347 Selenicereus undatus HOM05D003406 ORTHO05D004026 3.4e-31 139.8 137 53.3
Atru.chr12.1360 Acer truncatum HOM05D003406 ORTHO05D004026 5.8e-31 139.0 137 53.3
FAN16G0070 Fragaria x ananassa HOM05D003406 ORTHO05D004026 5.8e-31 139.0 227 68.3
Manes.11G004700 Manihot esculenta HOM05D003406 ORTHO05D004026 5.8e-31 139.0 138 54.3
Potri.001G026800 Populus trichocarpa HOM05D003406 ORTHO05D004026 5.8e-31 139.0 136 55.1
Sed0018149 Sechium edule HOM05D003406 ORTHO05D004026 5.8e-31 139.0 133 52.6
CANSAT25G0328 Cannabis sativa HOM05D003406 ORTHO05D004026 7.5e-31 138.7 138 55.1
CiPaw.13G012800 Carya illinoinensis HOM05D003406 ORTHO05D004026 7.5e-31 138.7 137 54.7
GSVIVG01013527001 Vitis vinifera HOM05D003406 ORTHO05D004026 7.5e-31 138.7 143 53.8
Eucgr.G03238 Eucalyptus grandis HOM05D003406 ORTHO05D004026 9.8e-31 138.3 137 54.0
FAN11G1841 Fragaria x ananassa HOM05D003406 ORTHO05D004026 9.8e-31 138.3 227 62.6
QL04p014603 Quercus lobata HOM05D003406 ORTHO05D004026 9.8e-31 138.3 137 54.0
QL04p014965 Quercus lobata HOM05D003406 ORTHO05D004026 9.8e-31 138.3 137 54.0
Duzib106G0689 Durio zibethinus HOM05D003406 ORTHO05D004026 1.3e-30 137.9 141 53.9
Manes.04G160100 Manihot esculenta HOM05D003406 ORTHO05D004026 1.3e-30 137.9 138 54.3
Thecc.10G162300 Theobroma cacao HOM05D003406 ORTHO05D004026 1.3e-30 137.9 135 54.8
SGA_v2.0_scaffold124G33625 Striga asiatica HOM05D003406 ORTHO05D004026 1.7e-30 137.5 266 62.4
Duzib114G0281 Durio zibethinus HOM05D003406 ORTHO05D004026 2.2e-30 137.1 141 53.2
Haze_03074 Corylus avellana HOM05D003406 ORTHO05D004026 2.9e-30 136.7 137 53.3
Dinv32032 Davidia involucrata HOM05D003406 ORTHO05D004026 3.7e-30 136.3 137 54.0
Cfa010885 Carpinus fangiana HOM05D003406 ORTHO05D004026 4.9e-30 136.0 137 53.3
MELO3C005161.2 Cucumis melo HOM05D003406 ORTHO05D004026 4.9e-30 136.0 133 51.9
CsaV3_5G024420 Cucumis sativus L. HOM05D003406 ORTHO05D004026 4.9e-30 136.0 133 51.9
Cc00_g06910 Coffea canephora HOM05D003406 ORTHO05D004026 6.4e-30 135.6 133 53.4
Actinidia06245 Actinidia chinensis HOM05D003406 ORTHO05D004026 1.4e-29 134.4 137 53.3
Aqoxy4G02704 Aquilegia oxysepala HOM05D003406 ORTHO05D004026 1.4e-29 134.4 137 54.0
EL10Ac2g02817 Beta vulgaris HOM05D003406 ORTHO05D004026 1.4e-29 134.4 137 54.0
CSS0014544 Camellia sinensis var. sinensis HOM05D003406 ORTHO05D004026 4.1e-29 132.9 137 52.6
ATR0745G072 Amborella trichopoda HOM05D003406 ORTHO05D004026 5.4e-29 132.5 136 52.9
Potri.003G197900 Populus trichocarpa HOM05D003406 ORTHO05D004026 5.4e-29 132.5 136 54.4
AUR62037187 Chenopodium quinoa HOM05D003406 ORTHO05D004026 7.0e-29 132.1 137 53.3
FAN16G0123 Fragaria x ananassa HOM05D003406 ORTHO05D004026 7.0e-29 132.1 227 59.0
Lj7A583T43 Lonicera japonica HOM05D003406 ORTHO05D004026 7.0e-29 132.1 143 51.0
PSO561G0002 Papaver somniferum HOM05D003406 ORTHO05D004026 7.0e-29 132.1 143 53.1
arahy.Tifrunner.gnm1.ann1.P8HZNX Arachis hypogaea HOM05D003406 ORTHO05D004026 9.2e-29 131.7 141 49.6
ECA248G2072 Erigeron canadensis HOM05D003406 ORTHO05D004026 1.6e-28 131.0 141 50.4
MBI02_g23406_MAGBIO Magnolia biondii HOM05D003406 ORTHO05D004026 1.6e-28 131.0 143 51.0
Potri.T125206 Populus trichocarpa HOM05D003406 ORTHO05D004026 1.6e-28 131.0 136 53.7
HPP92_025009 Vanilla planifolia HOM05D003406 ORTHO05D004026 1.6e-28 131.0 135 50.4
AUR62026878 Chenopodium quinoa HOM05D003406 ORTHO05D004026 2.1e-28 130.6 137 52.6
PSO063G0746 Papaver somniferum HOM05D003406 ORTHO05D004026 2.1e-28 130.6 143 52.4
TAR369G0157 Trochodendron aralioides HOM05D003406 ORTHO05D004026 2.1e-28 130.6 140 54.3
FAN23G2758 Fragaria x ananassa HOM05D003406 ORTHO05D004026 3.5e-28 129.8 193 74.6
Thhalv10012890m.g Eutrema salsugineum HOM05D003406 ORTHO05D004026 4.6e-28 129.4 138 50.0
Lj3g0018542 Lotus japonicus HOM05D003406 ORTHO05D004026 6.0e-28 129.0 135 50.4
Sc14g0005750 Simmondsia chinensis HOM05D003406 ORTHO05D004026 1.0e-27 128.3 137 50.4
Nn7g36639 Nelumbo nucifera HOM05D003406 ORTHO05D004026 1.3e-27 127.9 137 51.8
BcaB01g05356 Brassica carinata HOM05D003406 ORTHO05D004026 1.7e-27 127.5 140 50.7
A03p06010 Brassica napus HOM05D003406 ORTHO05D004026 1.7e-27 127.5 140 50.7
BraA03t09938Z Brassica rapa HOM05D003406 ORTHO05D004026 1.7e-27 127.5 140 50.7
Glyma.13G198200 Glycine max HOM05D003406 ORTHO05D004026 1.7e-27 127.5 141 49.6
VMungo1127G0085 Vigna mungo HOM05D003406 ORTHO05D004026 1.7e-27 127.5 135 50.4
Lalb_Chr01g0007801 Lupinus albus HOM05D003406 ORTHO05D004026 2.3e-27 127.1 135 49.6
TWI63G0701 Tripterygium wilfordii HOM05D003406 ORTHO05D004026 2.3e-27 127.1 137 51.1
AL6G24100 Arabidopsis lyrata HOM05D003406 ORTHO05D004026 3.0e-27 126.7 139 49.6
ClCG01G007460 Citrullus lanatus HOM05D003406 ORTHO05D004026 3.0e-27 126.7 164 43.9
MSTRG.16987 Avicennia marina HOM05D003406 ORTHO05D004026 3.9e-27 126.3 133 48.1
THA.LOC104819128 Tarenaya hassleriana HOM05D003406 ORTHO05D004026 3.9e-27 126.3 142 50.0
THA.LOC104826724 Tarenaya hassleriana HOM05D003406 ORTHO05D004026 3.9e-27 126.3 142 50.0
Ca_23943_v3 Cicer arietinum L. HOM05D003406 ORTHO05D004026 5.1e-27 125.9 135 49.6
Glyma.15G236500 Glycine max HOM05D003406 ORTHO05D004026 5.1e-27 125.9 141 48.9
Psat4g192120 Pisum sativum HOM05D003406 ORTHO05D004026 5.1e-27 125.9 141 48.2
Phvul.011G207400 Phaseolus vulgaris HOM05D003406 ORTHO05D004026 6.6e-27 125.6 135 49.6
PGR031G1802 Punica granatum HOM05D003406 ORTHO05D004026 6.6e-27 125.6 133 46.6
BolC3t13203H Brassica oleracea HOM05D003406 ORTHO05D004026 1.1e-26 124.8 140 50.0
SalBow5G0382 Salvia bowleyana HOM05D003406 ORTHO05D004026 1.1e-26 124.8 138 52.2
SalBow5G3900 Salvia bowleyana HOM05D003406 ORTHO05D004026 1.1e-26 124.8 138 52.2
CBR_g22487 Chara braunii HOM05D003406 ORTHO05D004026 1.5e-26 124.4 140 48.6
FAN27G1752 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.9e-26 124.0 225 65.8
Lalb_Chr19g0132381 Lupinus albus HOM05D003406 ORTHO05D004026 1.9e-26 124.0 140 47.9
CARHR199960 Cardamine hirsuta HOM05D003406 ORTHO05D004026 2.5e-26 123.6 134 51.5
CBR_g16799 Chara braunii HOM05D003406 ORTHO05D004026 3.3e-26 123.2 140 47.9
FAN09G3514 Fragaria x ananassa HOM05D003406 ORTHO05D004026 9.5e-26 121.7 225 65.3
Migut.B01223 Erythranthe guttata HOM05D003406 ORTHO05D004026 1.6e-25 120.9 134 50.0
HanXRQChr01g0004511 Helianthus annuus HOM05D003406 ORTHO05D004026 2.1e-25 120.6 140 47.9
HanXRQChr15g0463071 Helianthus annuus HOM05D003406 ORTHO05D004026 2.1e-25 120.6 140 47.9
Carub.0006s1164 Capsella rubella HOM05D003406 ORTHO05D004026 2.8e-25 120.2 69 72.5
C03p07050 Brassica napus HOM05D003406 ORTHO05D004026 3.6e-25 119.8 134 50.0
Lsat_1_v5_gn_1_115021 Lactuca sativa HOM05D003406 ORTHO05D004026 3.6e-25 119.8 137 49.6
Medtr8g038550 Medicago truncatula HOM05D003406 ORTHO05D004026 3.6e-25 119.8 144 45.1
AT5G13480 Arabidopsis thaliana HOM05D003406 ORTHO05D004026 4.7e-25 119.4 138 47.1
Hma1.2p1_1396F.1_g280640 Hydrangea macrophylla HOM05D003406 ORTHO05D004026 8.1e-25 118.6 186 74.2
AUR62037193 Chenopodium quinoa HOM05D003406 ORTHO05D015410 3.1e-24 116.7 72 66.7
Zm00001eb140970 Zea mays HOM05D003406 ORTHO05D004026 3.1e-24 116.7 137 45.3
Aqoxy2G01593 Aquilegia oxysepala HOM05D003406 ORTHO05D004026 9.9e-23 111.7 110 55.5
Mapoly0029s0111 Marchantia polymorpha HOM05D003406 ORTHO05D004026 2.9e-22 110.2 142 46.5
FAN19G1643 Fragaria x ananassa HOM05D003406 ORTHO05D004026 4.9e-22 109.4 230 45.2
Rhsim07G0066700 Rhododendron simsii HOM05D003406 ORTHO05D004026 1.4e-21 107.8 184 39.1
MCO04G412 Micromonas commoda HOM05D003406 ORTHO05D004026 1.9e-21 107.5 238 54.2
Pp3c16_16500 Physcomitrium patens HOM05D003406 ORTHO05D004026 7.1e-21 105.5 130 43.8
Nitab4.5_0000151g0240 Nicotiana tabacum HOM05D003406 ORTHO05D004026 6.0e-20 102.4 133 45.9
Nitab4.5_0001669g0120 Nicotiana tabacum HOM05D003406 ORTHO05D004026 6.0e-20 102.4 133 45.9
Sp6g30540 Schrenkiella parvula HOM05D003406 ORTHO05D004026 6.0e-20 102.4 140 43.6
SMO353G0072 Selaginella moellendorffii HOM05D003406 ORTHO05D004026 3.9e-19 99.8 135 43.0
PSO782G3285 Papaver somniferum HOM05D003406 ORTHO05D004026 1.9e-18 97.4 141 45.4
Solyc08g067040.4 Solanum lycopersicum HOM05D003406 ORTHO05D004026 3.3e-18 96.7 133 44.4
Sopen08g020990 Solanum pennellii HOM05D003406 ORTHO05D004026 3.3e-18 96.7 133 44.4
TPR.G36971 Trifolium pratense HOM05D003406 ORTHO05D004026 4.3e-18 96.3 142 42.3
vmacro13749 Vaccinium macrocarpon HOM05D003406 ORTHO05D004026 1.6e-17 94.4 124 46.0
SEGI_32752 Sequoiadendron giganteum HOM05D003406 ORTHO05D004026 8.1e-17 92.0 56 66.1
BcaNung01887 Brassica carinata HOM05D003406 ORTHO05D004026 4.0e-16 89.7 140 41.4
BraA02t05170Z Brassica rapa HOM05D003406 ORTHO05D004026 4.0e-16 89.7 140 40.7
PRCOL_00004312 Prasinoderma coloniale HOM05D003406 ORTHO05D004026 4.0e-16 89.7 291 48.5
BcaNung01149 Brassica carinata HOM05D003406 ORTHO05D004026 5.2e-16 89.4 140 40.0
C02p06160 Brassica napus HOM05D003406 ORTHO05D004026 5.2e-16 89.4 140 40.0
BolC2t06560H Brassica oleracea HOM05D003406 ORTHO05D004026 5.2e-16 89.4 140 40.0
AUR62037192 Chenopodium quinoa HOM05D003406 ORTHO05D004026 5.2e-16 89.4 115 47.0
A02p01970 Brassica napus HOM05D003406 ORTHO05D004026 8.9e-16 88.6 132 40.9
Aa31LG11G7380 Aethionema arabicum HOM05D003406 ORTHO05D004026 1.2e-15 88.2 117 47.0
SEGI_30282 Sequoiadendron giganteum HOM05D003406 ORTHO05D004026 1.5e-15 87.8 87 50.6
SEGI_34701 Sequoiadendron giganteum HOM05D003406 ORTHO05D004026 1.4e-13 81.3 57 61.4
ATR0568G096 Amborella trichopoda HOM05D003406 ORTHO05D004026 1.6e-12 77.8 112 42.9
FAN11G4032 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.6e-12 77.8 71 53.5
FAN19G2649 Fragaria x ananassa HOM05D003406 ORTHO05D004026 4.6e-12 76.3 211 48.3
SMO231G0014 Selaginella moellendorffii HOM05D003406 ORTHO05D004026 6.0e-12 75.9 83 47.0
Haze_26561 Corylus avellana HOM05D003406 ORTHO05D004026 1.3e-11 74.7 77 46.8
Cre06.g251951 Chlamydomonas reinhardtii HOM05D003406 ORTHO05D004026 2.5e-10 70.5 69 42.0
TPR.G36904 Trifolium pratense HOM05D003406 ORTHO05D004026 4.3e-10 69.7 72 47.2
Sabra03G0147300 Salix brachista HOM05D003406 ORTHO05D004026 5.6e-10 69.3 157 34.4
FAN14G3483 Fragaria x ananassa HOM05D003406 ORTHO05D004026 2.4e-08 63.9 71 45.1
Aa31LG8G12410 Aethionema arabicum HOM05D061913 ORTHO05D030983 1.2e-07 61.6 55 47.3
TPR.G24634 Trifolium pratense HOM05D003406 ORTHO05D004026 1.2e-07 61.6 72 43.1


User provided reference genes

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