Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0485021 Rosa chinensis HOM05D003684 ORTHO05D004428 0.0e+00 1569.7 802 100.0
FvH4_1g25880 Fragaria vesca HOM05D003684 ORTHO05D004428 0.0e+00 1451.4 802 93.1
FAN28G1615 Fragaria x ananassa HOM05D003684 ORTHO05D004428 0.0e+00 1434.5 802 92.4
FAN19G3168 Fragaria x ananassa HOM05D003684 ORTHO05D004428 0.0e+00 1419.4 794 92.4
FAN26G1029 Fragaria x ananassa HOM05D003684 ORTHO05D004428 0.0e+00 1395.9 795 90.8
FAN23G1204 Fragaria x ananassa HOM05D003684 ORTHO05D004428 0.0e+00 1386.7 802 89.9
MD15G1140800 Malus domestica HOM05D003684 ORTHO05D004428 0.0e+00 1215.3 851 75.9
Cfa020930 Carpinus fangiana HOM05D003684 ORTHO05D004428 0.0e+00 1188.3 808 76.6
Prupe.4G280600 Prunus persica HOM05D003684 ORTHO05D004428 0.0e+00 1174.8 711 85.5
CiPaw.16G119400 Carya illinoinensis HOM05D003684 ORTHO05D004428 0.0e+00 1145.2 808 74.3
Duzib213G0690 Durio zibethinus HOM05D003684 ORTHO05D004428 0.0e+00 1120.5 818 72.5
VMungo0720G1706 Vigna mungo HOM05D003684 ORTHO05D004428 0.0e+00 1117.8 811 71.9
Glyma.10G175900 Glycine max HOM05D003684 ORTHO05D004428 0.0e+00 1114.4 825 70.9
Phvul.007G114500 Phaseolus vulgaris HOM05D003684 ORTHO05D004428 0.0e+00 1107.8 826 70.5
Manes.13G154400 Manihot esculenta HOM05D003684 ORTHO05D004428 0.0e+00 1106.7 816 71.9
Potri.004G135800 Populus trichocarpa HOM05D003684 ORTHO05D004428 0.0e+00 1103.2 807 72.2
COL.COLO4_36995 Corchorus olitorius HOM05D003684 ORTHO05D004428 0.0e+00 1099.3 820 71.3
Thecc.07G170900 Theobroma cacao HOM05D003684 ORTHO05D004428 0.0e+00 1088.9 819 71.3
Phvul.004G132300 Phaseolus vulgaris HOM05D003684 ORTHO05D004428 0.0e+00 1087.0 814 70.5
CsaV3_2G019660 Cucumis sativus L. HOM05D003684 ORTHO05D004428 0.0e+00 1085.1 809 70.0
Potri.018G145560 Populus trichocarpa HOM05D003684 ORTHO05D004428 0.0e+00 1078.9 809 70.5
Gorai.002G106900 Gossypium raimondii HOM05D003684 ORTHO05D004428 0.0e+00 1077.8 818 70.5
Glyma.09G157300 Glycine max HOM05D003684 ORTHO05D004428 0.0e+00 1077.4 812 70.6
Potri.T044700 Populus trichocarpa HOM05D003684 ORTHO05D004428 5.5e-312 1074.3 809 70.1
Lj5g0014818 Lotus japonicus HOM05D003684 ORTHO05D004428 1.1e-311 1072.8 815 68.5
Lalb_Chr06g0168741 Lupinus albus HOM05D003684 ORTHO05D004428 1.1e-311 1072.8 813 69.7
Ciclev10024915m.g Citrus clementina HOM05D003684 ORTHO05D004428 1.9e-310 1068.9 812 70.2
Atru.chr3.1442 Acer truncatum HOM05D003684 ORTHO05D004428 4.2e-310 1067.8 814 69.8
Glyma.20G214600 Glycine max HOM05D003684 ORTHO05D004428 1.2e-309 1066.2 825 69.1
Duzib187G1616 Durio zibethinus HOM05D003684 ORTHO05D004428 4.6e-309 1064.3 818 70.0
Sabra04G0082300 Salix brachista HOM05D003684 ORTHO05D004428 1.3e-308 1062.8 826 69.5
PGR119G1631 Punica granatum HOM05D003684 ORTHO05D004428 5.1e-308 1060.8 813 69.7
Sed0026164 Sechium edule HOM05D003684 ORTHO05D004428 3.3e-307 1058.1 816 69.0
TWI31G1361 Tripterygium wilfordii HOM05D003684 ORTHO05D004428 4.7e-306 1054.3 809 68.0
Ca_09907_v3 Cicer arietinum L. HOM05D003684 ORTHO05D004428 7.6e-304 1047.0 848 67.5
TAR381G1133 Trochodendron aralioides HOM05D003684 ORTHO05D004428 2.9e-303 1045.0 816 68.1
Lalb_Chr02g0149761 Lupinus albus HOM05D003684 ORTHO05D004428 3.9e-300 1034.6 813 67.8
Glyma.16G207900 Glycine max HOM05D003684 ORTHO05D004428 1.1e-299 1033.1 814 68.2
arahy.Tifrunner.gnm1.ann1.554WMS Arachis hypogaea HOM05D003684 ORTHO05D004428 2.8e-298 1028.5 815 66.9
arahy.Tifrunner.gnm1.ann1.88FPG1 Arachis hypogaea HOM05D003684 ORTHO05D004428 1.8e-297 1025.8 815 66.7
Psat6g111880 Pisum sativum HOM05D003684 ORTHO05D004428 2.4e-297 1025.4 835 66.0
Dinv26831 Davidia involucrata HOM05D003684 ORTHO05D004428 7.6e-296 1020.4 786 71.0
Gohir.A01G097200 Gossypium hirsutum HOM05D003684 ORTHO05D004428 3.2e-294 1015.0 818 67.4
Lalb_Chr21g0311771 Lupinus albus HOM05D003684 ORTHO05D004428 5.4e-294 1014.2 813 67.0
arahy.Tifrunner.gnm1.ann1.XFQ1DZ Arachis hypogaea HOM05D003684 ORTHO05D004428 5.1e-284 981.1 828 65.1
Gohir.D01G081800 Gossypium hirsutum HOM05D003684 ORTHO05D004428 1.1e-283 979.9 721 71.3
VMungo0464G0733 Vigna mungo HOM05D003684 ORTHO05D004428 5.6e-283 977.6 812 65.6
Ca_25251_v3 Cicer arietinum L. HOM05D003684 ORTHO05D004428 1.0e-279 966.8 834 64.3
Medtr1g077090 Medicago truncatula HOM05D003684 ORTHO05D004428 1.8e-276 956.1 833 62.9
Solyc05g056340.3 Solanum lycopersicum HOM05D003684 ORTHO05D004428 1.8e-273 946.0 819 62.4
TWI79G1581 Tripterygium wilfordii HOM05D003684 ORTHO05D004428 4.1e-273 944.9 814 63.5
Sopen05g034730 Solanum pennellii HOM05D003684 ORTHO05D004428 1.5e-272 943.0 819 62.3
Oeu063702.1 Olea europaea HOM05D003684 ORTHO05D004428 9.4e-270 933.7 827 62.4
CAN.G1156.25 Capsicum annuum HOM05D003684 ORTHO05D004428 2.7e-269 932.2 866 59.4
Lj2g0008338 Lotus japonicus HOM05D003684 ORTHO05D004428 1.5e-264 916.4 809 62.8
Medtr6g065070 Medicago truncatula HOM05D003684 ORTHO05D004428 2.5e-262 909.1 772 63.2
Aqoxy5G02639 Aquilegia oxysepala HOM05D003684 ORTHO05D004428 2.1e-261 906.0 816 61.4
THA.LOC104800528 Tarenaya hassleriana HOM05D003684 ORTHO05D004428 2.6e-259 899.0 860 58.1
Actinidia19941 Actinidia chinensis HOM05D003684 ORTHO05D004428 6.3e-258 894.4 828 62.1
ClCG02G000160 Citrullus lanatus HOM05D003684 ORTHO05D004428 1.1e-254 883.6 801 61.3
Aa31LG3G18080 Aethionema arabicum HOM05D003684 ORTHO05D004428 1.0e-252 877.1 873 57.7
EL10Ac4g09714 Beta vulgaris HOM05D003684 ORTHO05D004428 1.0e-252 877.1 822 61.9
Migut.M00001 Erythranthe guttata HOM05D003684 ORTHO05D004428 1.3e-250 870.2 834 59.0
Peaxi162Scf00819g00027 Petunia axillaris HOM05D003684 ORTHO05D004428 1.1e-249 867.1 841 58.7
Ah.06g188290 Amaranthus hybridus HOM05D003684 ORTHO05D004428 4.1e-249 865.1 815 61.1
TPR.G40356 Trifolium pratense HOM05D003684 ORTHO05D004428 3.5e-248 862.1 813 59.5
CANSAT54G1806 Cannabis sativa HOM05D003684 ORTHO05D004428 1.8e-244 849.7 840 60.4
Rhsim10G0125000 Rhododendron simsii HOM05D003684 ORTHO05D004428 4.4e-243 845.1 984 53.4
SGA_v2.0_scaffold12G06270 Striga asiatica HOM05D003684 ORTHO05D004428 9.7e-243 844.0 839 57.8
THA.LOC104818396 Tarenaya hassleriana HOM05D003684 ORTHO05D004428 8.2e-242 840.9 828 57.6
Hund21769 Selenicereus undatus HOM05D003684 ORTHO05D004428 3.1e-241 839.0 816 60.4
CARHR204550 Cardamine hirsuta HOM05D003684 ORTHO05D004428 9.1e-241 837.4 917 53.7
Thhalv10012626m.g Eutrema salsugineum HOM05D003684 ORTHO05D004428 6.5e-239 831.2 916 54.4
MSTRG.23231 Avicennia marina HOM05D003684 ORTHO05D004428 8.5e-239 830.9 820 57.9
Carub.0006s0737 Capsella rubella HOM05D003684 ORTHO05D004428 2.0e-235 819.7 916 52.8
AL6G18920 Arabidopsis lyrata HOM05D003684 ORTHO05D004428 1.3e-234 817.0 925 52.2
AUR62000586 Chenopodium quinoa HOM05D003684 ORTHO05D004428 4.5e-232 808.5 818 58.7
Sp6g34450 Schrenkiella parvula HOM05D003684 ORTHO05D004428 3.3e-230 802.4 922 52.0
CiPaw.15G185900 Carya illinoinensis HOM05D003684 ORTHO05D004428 1.2e-229 800.4 540 76.1
Os07g0477500 Oryza sativa ssp. japonica HOM05D003684 ORTHO05D004428 2.5e-222 776.2 812 55.3
AT5G08450 Arabidopsis thaliana HOM05D003684 ORTHO05D004428 3.3e-222 775.8 927 50.6
TPR.G16631 Trifolium pratense HOM05D003684 ORTHO05D004428 9.5e-222 774.2 556 71.0
BolC3t12968H Brassica oleracea HOM05D003684 ORTHO05D004428 1.8e-220 770.0 906 52.4
A03p03860 Brassica napus HOM05D003684 ORTHO05D004428 2.0e-219 766.5 913 52.4
Psat0s3859g0040 Pisum sativum HOM05D003684 ORTHO05D004428 2.0e-219 766.5 806 55.0
Peaxi162Scf00353g00740 Petunia axillaris HOM05D003684 ORTHO05D004428 3.4e-219 765.8 776 56.4
BraA03t09733Z Brassica rapa HOM05D003684 ORTHO05D004428 1.3e-218 763.8 922 51.8
C03p04350 Brassica napus HOM05D003684 ORTHO05D004428 1.1e-217 760.8 910 52.1
ECA248G2431 Erigeron canadensis HOM05D003684 ORTHO05D004428 1.1e-217 760.8 813 56.0
BcaB01g05594 Brassica carinata HOM05D003684 ORTHO05D004428 2.4e-217 759.6 822 55.2
HPP92_003712 Vanilla planifolia HOM05D003684 ORTHO05D004428 3.2e-217 759.2 814 53.7
vmacro12735 Vaccinium macrocarpon HOM05D003684 ORTHO05D004428 5.0e-215 751.9 1049 47.2
Nitab4.5_0000496g0270 Nicotiana tabacum HOM05D003684 ORTHO05D004428 8.6e-215 751.1 816 54.2
AUR62006943 Chenopodium quinoa HOM05D003684 ORTHO05D004428 1.4e-212 743.8 826 54.6
HanXRQChr11g0336971 Helianthus annuus HOM05D003684 ORTHO05D004428 1.4e-212 743.8 764 56.4
GSVIVG01000253001 Vitis vinifera HOM05D003684 ORTHO05D004428 3.2e-209 732.6 467 80.3
unitig_736.g22645 Utricularia gibba HOM05D003684 ORTHO05D004428 1.6e-208 730.3 802 53.5
CDE08G0027 Ceratophyllum demersum HOM05D003684 ORTHO05D004428 1.5e-206 723.8 814 52.2
Potri.T044400 Populus trichocarpa HOM05D003684 ORTHO05D004428 4.7e-205 718.8 627 64.0
Zm00001eb178520 Zea mays HOM05D003684 ORTHO05D004428 3.3e-198 696.0 814 50.7
Nitab4.5_0006957g0020 Nicotiana tabacum HOM05D003684 ORTHO05D004428 4.3e-198 695.7 799 52.8
unitig_899.g14642 Utricularia gibba HOM05D003684 ORTHO05D004428 5.6e-198 695.3 801 52.3
PSO170G2972 Papaver somniferum HOM05D003684 ORTHO05D004428 2.1e-197 693.3 911 49.5
Lsat_1_v5_gn_1_130380 Lactuca sativa HOM05D003684 ORTHO05D004428 3.1e-196 689.5 835 51.7
Zm00001eb108610 Zea mays HOM05D003684 ORTHO05D004428 3.1e-196 689.5 815 51.3
PSO782G3749 Papaver somniferum HOM05D003684 ORTHO05D004428 6.8e-196 688.3 922 48.8
DCAR_009623 Daucus carota HOM05D003684 ORTHO05D004428 9.9e-179 631.3 413 75.5
Cpa.g.sc138.52 Carica papaya HOM05D003684 ORTHO05D004428 3.5e-176 622.9 367 81.5
AL6G19100 Arabidopsis lyrata HOM05D003684 ORTHO05D004428 1.1e-174 617.8 1088 40.1
Sabra19G0000700 Salix brachista HOM05D003684 ORTHO05D004428 4.0e-172 609.4 355 82.5
Nn1g08436 Nelumbo nucifera HOM05D003684 ORTHO05D004428 2.5e-169 600.1 663 54.1
Sc09g0001960 Simmondsia chinensis HOM05D003684 ORTHO05D004428 1.5e-166 590.9 342 82.5
Sabra19G0012100 Salix brachista HOM05D003684 ORTHO05D004428 3.3e-166 589.7 355 80.3
SHI11408 Sapria himalayana HOM05D003684 ORTHO05D004428 1.1e-164 584.7 799 48.2
SalBow8G3946 Salvia bowleyana HOM05D003684 ORTHO05D004428 3.4e-155 553.1 402 68.4
BcaB08g37259 Brassica carinata HOM05D003684 ORTHO05D004428 2.0e-150 537.3 446 63.5
MSTRG.2470 Avicennia marina HOM05D003684 ORTHO05D004428 3.3e-150 536.6 608 52.3
BraA10t44878Z Brassica rapa HOM05D003684 ORTHO05D004428 5.7e-150 535.8 361 73.1
Haze_19362 Corylus avellana HOM05D003684 ORTHO05D004428 1.1e-148 531.6 463 66.1
Cc07_g19760 Coffea canephora HOM05D003684 ORTHO05D004428 1.5e-147 527.7 343 72.6
C09p68560 Brassica napus HOM05D003684 ORTHO05D004428 2.2e-146 523.9 380 68.9
Sc06g0005260 Simmondsia chinensis HOM05D003684 ORTHO05D004428 1.6e-144 517.7 509 55.4
HPP92_003711 Vanilla planifolia HOM05D003684 ORTHO05D004428 2.3e-143 513.8 647 48.8
ATR1136G078 Amborella trichopoda HOM05D003684 ORTHO05D004428 2.6e-142 510.4 355 70.1
Actinidia36575 Actinidia chinensis HOM05D003684 ORTHO05D004428 9.7e-142 508.4 412 65.5
A10p28300 Brassica napus HOM05D003684 ORTHO05D004428 1.1e-137 495.0 379 66.5
DCAR_019948 Daucus carota HOM05D003684 ORTHO05D004428 1.1e-132 478.4 424 57.3
Oeu034404.1 Olea europaea HOM05D003684 ORTHO05D004428 1.8e-132 477.6 296 79.7
Lj2C616G3 Lonicera japonica HOM05D003684 ORTHO05D004428 5.3e-132 476.1 322 74.8
BolC9t59599H Brassica oleracea HOM05D003684 ORTHO05D004428 6.5e-130 469.2 370 66.2
Pp3c3_32800 Physcomitrium patens HOM05D003684 ORTHO05D004428 4.1e-124 449.9 430 55.3
MELO3C023205.2 Cucumis melo HOM05D003684 ORTHO05D004428 5.9e-123 446.0 451 56.5
MBI03_g18673_MAGBIO Magnolia biondii HOM05D003684 ORTHO05D004428 2.5e-121 440.7 275 79.6
SMO356G0426 Selaginella moellendorffii HOM05D003684 ORTHO05D004428 9.4e-121 438.7 437 55.1
HPP92_007640 Vanilla planifolia HOM05D003684 ORTHO05D004428 2.6e-118 430.6 681 41.3
Pp3c8_5360 Physcomitrium patens HOM05D003684 ORTHO05D004428 3.4e-118 430.3 436 52.3
Pp3c3_30960 Physcomitrium patens HOM05D003684 ORTHO05D004428 2.3e-114 417.5 436 51.6
Sabra19G0011700 Salix brachista HOM05D003684 ORTHO05D004428 1.8e-108 397.9 460 54.6
AagrBONN_evm.TU.Sc2ySwM_228.5259 Anthoceros agrestis HOM05D003684 ORTHO05D004428 7.0e-108 396.0 462 49.4
PGSC0003DMG400023330 Solanum tuberosum HOM05D003684 ORTHO05D004428 1.9e-105 387.9 459 51.4
Oeu034403.1 Olea europaea HOM05D003684 ORTHO05D004428 3.3e-105 387.1 443 51.9
Potri.018G145546 Populus trichocarpa HOM05D003684 ORTHO05D004428 9.5e-105 385.6 241 80.9
Cpa.g.sc138.51 Carica papaya HOM05D003684 ORTHO05D004428 1.4e-103 381.7 363 61.4
Potri.018G145542 Populus trichocarpa HOM05D003684 ORTHO05D004428 1.0e-98 365.5 350 60.3
CDE02G3206 Ceratophyllum demersum HOM05D003684 ORTHO05D004428 1.1e-97 362.1 602 40.4
Mapoly0050s0019 Marchantia polymorpha HOM05D003684 ORTHO05D004428 1.5e-97 361.7 753 38.4
SGA_v2.0_scaffold51G18855 Striga asiatica HOM05D003684 ORTHO05D004428 3.3e-97 360.5 320 58.4
Lj2C616T2 Lonicera japonica HOM05D003684 ORTHO05D004428 1.3e-93 348.6 574 48.3
CSS0015943 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 8.6e-90 335.9 478 48.7
DCAR_009622 Daucus carota HOM05D003684 ORTHO05D004428 2.8e-88 330.9 415 51.6
Ciclev10026566m.g Citrus clementina HOM05D003684 ORTHO05D004428 6.4e-85 319.7 185 83.8
CSS0049380 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 2.0e-78 298.1 261 61.7
CBR_g645 Chara braunii HOM05D003684 ORTHO05D004428 2.0e-78 298.1 420 41.2
MSTRG.2469 Avicennia marina HOM05D003684 ORTHO05D004428 2.9e-77 294.3 197 74.6
Sc09g0001970 Simmondsia chinensis HOM05D003684 ORTHO05D004428 1.9e-73 281.6 469 46.9
CDE02G3840 Ceratophyllum demersum HOM05D003684 ORTHO05D004428 1.2e-70 272.3 181 74.0
MCO05G109 Micromonas commoda HOM05D003684 ORTHO05D004428 7.3e-65 253.1 420 37.6
ATR1136G068 Amborella trichopoda HOM05D003684 ORTHO05D004428 2.2e-61 241.5 459 40.1
Cre03.g182600 Chlamydomonas reinhardtii HOM05D003684 ORTHO05D004428 3.8e-61 240.7 347 38.6
MBI01_g42406_MAGBIO Magnolia biondii HOM05D003684 ORTHO05D004428 3.5e-59 234.2 152 75.7
Cc07_g19750 Coffea canephora HOM05D003684 ORTHO05D004428 1.0e-58 232.6 185 63.8
HanXRQChr01g0009441 Helianthus annuus HOM05D003684 ORTHO05D004428 1.8e-58 231.9 183 65.6
Aqoxy391s001 Aquilegia oxysepala HOM05D003684 ORTHO05D004428 3.1e-47 194.5 101 91.1
PRCOL_00004531 Prasinoderma coloniale HOM05D003684 ORTHO05D028742 3.4e-46 191.0 327 35.8
Cc07_g19740 Coffea canephora HOM05D003684 ORTHO05D004428 3.8e-45 187.6 148 60.8
TPR.G16635 Trifolium pratense HOM05D003684 ORTHO05D004428 2.5e-44 184.9 216 55.1
Mapoly0024s0027 Marchantia polymorpha HOM05D003684 ORTHO05D004428 2.8e-40 171.4 611 30.4
Cc00_g24540 Coffea canephora HOM05D003684 ORTHO05D004428 6.9e-39 166.8 85 87.1
Sabra01G0044800 Salix brachista HOM05D003684 ORTHO05D004428 1.4e-23 115.9 65 84.6
HanXRQChr17g0567611 Helianthus annuus HOM05D003684 ORTHO05D004428 3.5e-22 111.3 63 84.1
Lsat_1_v5_gn_6_89680 Lactuca sativa HOM05D003684 ORTHO05D004428 3.5e-22 111.3 137 50.4
CSS0003103 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 1.3e-21 109.4 66 78.8
Ciclev10003222m.g Citrus clementina HOM05D003684 ORTHO05D004428 1.3e-21 109.4 127 52.0
SEGI_34739 Sequoiadendron giganteum HOM05D003684 ORTHO05D004428 1.0e-18 99.8 65 73.8
CSS0033146 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 2.4e-15 88.6 58 67.2
Ca_09910_v3 Cicer arietinum L. HOM05D003095 ORTHO05D003517 1.0e-13 83.2 79 63.3
EL10Ac2g03383 Beta vulgaris HOM05D000039 ORTHO05D001729 2.7e-11 75.1 59 64.4
Potri.018G145552 Populus trichocarpa HOM05D003684 ORTHO05D004428 8.0e-11 73.6 51 80.4
arahy.Tifrunner.gnm1.ann1.32AA53 Arachis hypogaea HOM05D003684 ORTHO05D001254 1.4e-10 72.8 52 65.4
Ciclev10003442m.g Citrus clementina HOM05D003684 ORTHO05D004428 3.0e-10 71.6 47 74.5
EL10Ac9g22716 Beta vulgaris HOM05D003684 ORTHO05D004428 7.5e-09 67.0 32 87.5
Ciclev10003579m.g Citrus clementina HOM05D003684 ORTHO05D004428 1.6e-06 59.3 56 57.1


User provided reference genes

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