Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0482651 Rosa chinensis HOM05D006106 ORTHO05D007662 1.7e-192 677.2 866 100.0
FAN05G2558 Fragaria x ananassa HOM05D006106 ORTHO05D007662 4.2e-151 539.7 856 91.2
FvH4_6g24060 Fragaria vesca HOM05D006106 ORTHO05D007662 7.8e-137 492.3 824 91.6
Prupe.7G058400 Prunus persica HOM05D006106 ORTHO05D007662 4.9e-131 473.0 861 86.1
MD12G1080100 Malus domestica HOM05D006106 ORTHO05D007662 2.4e-117 427.6 856 83.9
FAN14G5662 Fragaria x ananassa HOM05D006106 ORTHO05D007662 8.7e-104 382.5 856 80.0
Cfa016809 Carpinus fangiana HOM05D001739 ORTHO05D006605 1.3e-88 332.0 836 79.9
CSS0036472 Camellia sinensis var. sinensis HOM05D006106 ORTHO05D007662 3.9e-88 330.5 823 79.1
Haze_19847 Corylus avellana HOM05D006106 ORTHO05D007662 1.6e-86 325.1 833 70.8
GSVIVG01033271001 Vitis vinifera HOM05D006106 ORTHO05D007662 9.0e-85 319.3 812 80.5
CSS0045921 Camellia sinensis var. sinensis HOM05D006106 ORTHO05D007662 1.2e-84 318.9 797 80.6
Lju124C42G9 Lonicera japonica HOM05D006106 ORTHO05D007662 1.5e-84 318.5 801 73.0
Duzib128G0400 Durio zibethinus HOM05D006106 ORTHO05D007662 1.9e-82 311.6 839 77.6
Potri.006G049900 Populus trichocarpa HOM05D006106 ORTHO05D007662 4.6e-81 307.0 821 71.3
QL07p000909 Quercus lobata HOM05D006106 ORTHO05D007662 7.9e-81 306.2 810 73.2
Manes.08G051400 Manihot esculenta HOM05D006106 ORTHO05D007662 2.3e-80 304.7 828 78.6
Dinv12500 Davidia involucrata HOM05D006106 ORTHO05D007662 6.7e-80 303.1 799 74.1
TWI74G1340 Tripterygium wilfordii HOM05D006106 ORTHO05D007662 1.5e-79 302.0 780 78.8
Ciclev10004305m.g Citrus clementina HOM05D006106 ORTHO05D007662 5.7e-79 300.1 844 78.0
Sabra06G0034800 Salix brachista HOM05D006106 ORTHO05D007662 9.7e-79 299.3 821 77.0
Actinidia39218 Actinidia chinensis HOM05D006106 ORTHO05D007662 2.8e-78 297.7 801 77.4
Lj1g0017753 Lotus japonicus HOM05D006106 ORTHO05D007662 6.3e-78 296.6 811 79.8
Nn7g36310 Nelumbo nucifera HOM05D006106 ORTHO05D007662 3.1e-77 294.3 812 77.0
Sp4g23970 Schrenkiella parvula HOM05D006106 ORTHO05D007662 3.4e-76 290.8 786 83.8
AL4G40030 Arabidopsis lyrata HOM05D006106 ORTHO05D007662 5.0e-75 287.0 787 75.5
Thhalv10016262m.g Eutrema salsugineum HOM05D006106 ORTHO05D007662 5.0e-75 287.0 781 83.2
Atru.chr1.1113 Acer truncatum HOM05D006106 ORTHO05D007662 3.2e-74 284.3 819 78.3
AT2G41720 Arabidopsis thaliana HOM05D006106 ORTHO05D007662 4.2e-74 283.9 781 82.5
Hma1.2p1_1041F.1_g251060 Hydrangea macrophylla HOM05D006106 ORTHO05D007662 4.2e-74 283.9 789 72.5
ClCG10G015760 Citrullus lanatus HOM05D006106 ORTHO05D007662 1.2e-73 282.3 796 79.4
Glyma.03G136200 Glycine max HOM05D006106 ORTHO05D007662 8.8e-72 276.2 797 80.2
arahy.Tifrunner.gnm1.ann1.4I0CBR Arachis hypogaea HOM05D006106 ORTHO05D007662 1.5e-71 275.4 803 73.2
Cc06_g17630 Coffea canephora HOM05D006106 ORTHO05D007662 3.3e-71 274.2 841 64.2
Phvul.001G131500 Phaseolus vulgaris HOM05D006106 ORTHO05D007662 3.3e-71 274.2 799 79.8
MELO3C009803.2 Cucumis melo HOM05D006106 ORTHO05D007662 9.7e-71 272.7 793 79.1
Gohir.A04G032500 Gossypium hirsutum HOM05D006106 ORTHO05D007662 9.7e-71 272.7 817 66.5
arahy.Tifrunner.gnm1.ann1.HSF0DX Arachis hypogaea HOM05D006106 ORTHO05D007662 1.3e-70 272.3 841 79.0
DCAR_009064 Daucus carota HOM05D006106 ORTHO05D007662 1.3e-70 272.3 805 62.7
AUR62024458 Chenopodium quinoa HOM05D006106 ORTHO05D007662 1.7e-70 271.9 831 70.4
Gorai.009G383700 Gossypium raimondii HOM05D006106 ORTHO05D007662 1.7e-70 271.9 849 75.5
CsaV3_3G040680 Cucumis sativus L. HOM05D006106 ORTHO05D007662 2.2e-70 271.6 797 78.5
Aa31LG1G23740 Aethionema arabicum HOM05D006106 ORTHO05D007662 2.8e-70 271.2 784 65.7
Sopen04g007960 Solanum pennellii HOM05D006106 ORTHO05D007662 3.7e-70 270.8 802 69.2
Cpa.g.sc224.2 Carica papaya HOM05D006106 ORTHO05D007662 1.1e-69 269.2 824 78.0
Gorai.009G450600 Gossypium raimondii HOM05D006106 ORTHO05D007662 1.1e-69 269.2 849 75.1
Sc13g0001690 Simmondsia chinensis HOM05D006106 ORTHO05D007662 1.8e-69 268.5 779 73.2
Migut.J01752 Erythranthe guttata HOM05D006106 ORTHO05D007662 9.1e-69 266.2 794 79.1
AUR62026047 Chenopodium quinoa HOM05D006106 ORTHO05D007662 2.2e-67 261.5 835 65.7
CARHR136820 Cardamine hirsuta HOM05D006106 ORTHO05D007662 8.5e-67 259.6 784 78.6
A05p02440 Brassica napus HOM05D006106 ORTHO05D007662 1.1e-66 259.2 783 67.0
Medtr7g091410 Medicago truncatula HOM05D006106 ORTHO05D007662 1.1e-66 259.2 809 78.1
PGR004G1513 Punica granatum HOM05D006106 ORTHO05D007662 7.2e-66 256.5 811 80.9
Hund24702 Selenicereus undatus HOM05D006106 ORTHO05D007662 1.2e-65 255.8 821 64.1
Psat3g074120 Pisum sativum HOM05D006106 ORTHO05D007662 2.1e-65 255.0 795 71.8
BraA05t19238Z Brassica rapa HOM05D006106 ORTHO05D007662 2.7e-65 254.6 784 72.6
Lsat_1_v5_gn_9_30580 Lactuca sativa HOM05D006106 ORTHO05D007662 3.6e-65 254.2 765 80.0
C04p02890 Brassica napus HOM05D006106 ORTHO05D007662 1.4e-64 252.3 792 65.7
BolC4t21929H Brassica oleracea HOM05D006106 ORTHO05D007662 1.4e-64 252.3 792 65.7
PSO384G4415 Papaver somniferum HOM05D006106 ORTHO05D007662 1.8e-64 251.9 809 77.8
TPR.G3692 Trifolium pratense HOM05D006106 ORTHO05D007662 3.0e-64 251.1 837 68.6
Eucgr.A02342 Eucalyptus grandis HOM05D006106 ORTHO05D007662 3.3e-63 247.7 770 57.8
Aqoxy1G00233 Aquilegia oxysepala HOM05D006106 ORTHO05D007662 5.7e-63 246.9 818 76.8
SGA_v2.0_scaffold105G30404 Striga asiatica HOM05D001739 ORTHO05D006605 5.7e-63 246.9 826 61.1
EL10Ac3g07098 Beta vulgaris HOM05D006106 ORTHO05D007662 8.2e-62 243.0 865 64.0
Rhsim03G0026900 Rhododendron simsii HOM05D006106 ORTHO05D007662 1.8e-61 241.9 873 49.0
Oeu008911.1 Olea europaea HOM05D006106 ORTHO05D007662 4.1e-61 240.7 173 65.3
Nitab4.5_0000586g0120 Nicotiana tabacum HOM05D006106 ORTHO05D007662 5.3e-61 240.4 850 58.2
ECA247G0166 Erigeron canadensis HOM05D001739 ORTHO05D006605 7.0e-61 240.0 764 78.9
HanXRQChr10g0296661 Helianthus annuus HOM05D006106 ORTHO05D007662 7.0e-61 240.0 770 78.6
VMungo1383G2820 Vigna mungo HOM05D006106 ORTHO05D007662 1.2e-60 239.2 780 62.2
CiPaw.10G034000 Carya illinoinensis HOM05D006106 ORTHO05D007662 5.9e-60 236.9 166 66.9
Gohir.D05G352101 Gossypium hirsutum HOM05D006106 ORTHO05D007662 1.0e-59 236.1 192 57.8
Ca_15068_v3 Cicer arietinum L. HOM05D006106 ORTHO05D007662 6.5e-59 233.4 165 66.7
Gohir.D05G383800 Gossypium hirsutum HOM05D006106 ORTHO05D007662 1.4e-58 232.3 192 57.3
CAN.G676.31 Capsicum annuum HOM05D006106 ORTHO05D007662 4.2e-58 230.7 166 63.3
Hma1.2p1_1041F.1_g251050 Hydrangea macrophylla HOM05D006106 ORTHO05D007662 6.1e-57 226.9 159 62.9
QL07p000892 Quercus lobata HOM05D006106 ORTHO05D007662 3.0e-56 224.6 164 63.4
HPP92_011279 Vanilla planifolia HOM05D006106 ORTHO05D007662 5.2e-56 223.8 787 75.9
Ah.04g151600 Amaranthus hybridus HOM05D006106 ORTHO05D007662 1.5e-55 222.2 174 56.9
TAR623G1683 Trochodendron aralioides HOM05D006106 ORTHO05D007662 1.5e-55 222.2 207 56.5
vmacro07842 Vaccinium macrocarpon HOM05D006106 ORTHO05D007662 1.5e-55 222.2 148 66.9
Sed0021985 Sechium edule HOM05D006106 ORTHO05D007662 2.0e-55 221.9 199 54.8
ATR0188G017 Amborella trichopoda HOM05D006106 ORTHO05D007662 2.6e-55 221.5 789 75.2
Thecc.05G152200 Theobroma cacao HOM05D006106 ORTHO05D007662 7.4e-55 219.9 181 59.7
Lalb_Chr01g0017341 Lupinus albus HOM05D006106 ORTHO05D007662 2.8e-54 218.0 165 61.8
PSO339G0809 Papaver somniferum HOM05D006106 ORTHO05D007662 2.4e-53 214.9 744 78.4
Glyma.19G138101 Glycine max HOM05D006106 ORTHO05D007662 4.1e-53 214.2 159 64.2
COL.COLO4_28304 Corchorus olitorius HOM05D006106 ORTHO05D007662 2.0e-52 211.8 175 57.1
Gohir.D05G383766 Gossypium hirsutum HOM05D006106 ORTHO05D007662 5.0e-51 207.2 155 64.5
HPP92_011301 Vanilla planifolia HOM05D006106 ORTHO05D007662 8.5e-51 206.5 158 60.8
Gohir.D05G352075 Gossypium hirsutum HOM05D006106 ORTHO05D007662 1.5e-50 205.7 155 64.5
CDE08G0810 Ceratophyllum demersum HOM05D006106 ORTHO05D007662 4.2e-50 204.1 172 52.3
THA.LOC104804858 Tarenaya hassleriana HOM05D006106 ORTHO05D007662 2.3e-48 198.4 167 53.9
Carub.0004s2400 Capsella rubella HOM05D006106 ORTHO05D007662 6.7e-48 196.8 164 54.3
Solyc04g015950.3 Solanum lycopersicum HOM05D006106 ORTHO05D007662 4.4e-47 194.1 171 52.0
BcaNung06815 Brassica carinata HOM05D006106 ORTHO05D007662 5.7e-47 193.7 167 52.7
Ca_08448_v3 Cicer arietinum L. HOM05D006106 ORTHO05D007662 5.7e-47 193.7 161 59.0
Peaxi162Scf00130g00324 Petunia axillaris HOM05D006106 ORTHO05D007662 9.7e-47 193.0 835 64.6
Nitab4.5_0009615g0030 Nicotiana tabacum HOM05D006106 ORTHO05D007662 1.1e-45 189.5 166 54.8
Zm00001eb325040 Zea mays HOM05D006106 ORTHO05D007662 7.0e-45 186.8 177 52.5
Nitab4.5_0009615g0040 Nicotiana tabacum HOM05D006106 ORTHO05D007662 2.0e-44 185.3 166 50.6
BcaC02g12786 Brassica carinata HOM05D000138 ORTHO05D007692 7.7e-36 156.8 115 62.6
AagrBONN_evm.TU.Sc2ySwM_344.4225 Anthoceros agrestis HOM05D006106 ORTHO05D007662 1.2e-33 149.4 124 54.8
TAR623G1698 Trochodendron aralioides HOM05D006106 ORTHO05D007662 5.2e-32 144.1 123 59.3
Pp3c2_1940 Physcomitrium patens HOM05D006106 ORTHO05D007662 8.9e-32 143.3 139 51.8
MBI17_g23175_MAGBIO Magnolia biondii HOM05D006106 ORTHO05D007662 7.5e-31 140.2 386 28.0
Mapoly0043s0117 Marchantia polymorpha HOM05D006106 ORTHO05D007662 6.3e-30 137.1 122 52.5
Os07g0213300 Oryza sativa ssp. japonica HOM05D006106 ORTHO05D007662 8.3e-30 136.7 142 40.8
MBI17_g23173_MAGBIO Magnolia biondii HOM05D006106 ORTHO05D007662 6.6e-27 127.1 88 67.0
Rhsim03G0026800 Rhododendron simsii HOM05D006106 ORTHO05D007662 1.5e-26 125.9 115 51.3
Actinidia09323 Actinidia chinensis HOM05D001739 ORTHO05D006605 2.5e-26 125.2 94 61.7
CDE08G0364 Ceratophyllum demersum HOM05D006106 ORTHO05D007662 4.7e-25 120.9 116 51.7
Rhsim03G0025700 Rhododendron simsii HOM05D006106 ORTHO05D007662 6.1e-25 120.6 115 49.6
unitig_578.g15981 Utricularia gibba HOM05D006106 ORTHO05D007662 1.0e-24 119.8 125 51.2
CiPaw.10G033900 Carya illinoinensis HOM05D006106 ORTHO05D007662 4.0e-24 117.9 67 74.6
CBR_g50368 Chara braunii HOM05D006106 ORTHO05D007662 1.7e-22 112.5 126 46.0
Rhsim03G0025500 Rhododendron simsii HOM05D006106 ORTHO05D007662 4.1e-21 107.8 89 53.9
Gorai.003G091300 Gossypium raimondii HOM05D006106 ORTHO05D007662 9.2e-21 106.7 66 68.2
MELO3C031816.2 Cucumis melo HOM05D006106 ORTHO05D007662 3.0e-19 101.7 85 56.5
Rhsim03G0026000 Rhododendron simsii HOM05D001739 ORTHO05D007662 5.0e-19 100.9 76 56.6
BcaNung06942 Brassica carinata HOM05D006106 ORTHO05D007662 2.3e-16 92.0 78 51.3
MELO3C030027.2 Cucumis melo HOM05D006106 ORTHO05D007662 1.3e-14 86.3 67 61.2
COL.COLO4_28306 Corchorus olitorius HOM05D006106 ORTHO05D007662 7.0e-13 80.5 116 40.5


User provided reference genes

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