Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0479561 Rosa chinensis HOM05D005446 ORTHO05D006597 1.5e-83 312.8 155 100.0
FvH4_7g33290 Fragaria vesca HOM05D005446 ORTHO05D006597 3.2e-73 278.5 155 91.0
FAN01G0680 Fragaria x ananassa HOM05D005446 ORTHO05D006597 3.2e-73 278.5 155 91.6
FAN03G2203 Fragaria x ananassa HOM05D005446 ORTHO05D006597 5.4e-73 277.7 155 91.0
FAN10G1830 Fragaria x ananassa HOM05D005446 ORTHO05D006597 7.0e-73 277.3 155 91.0
RcHm_v2.0_Chr1g0383271 Rosa chinensis HOM05D005446 ORTHO05D006597 1.6e-72 276.2 155 92.3
Prupe.2G321800 Prunus persica HOM05D005446 ORTHO05D006597 7.0e-65 250.8 155 81.9
MD07G1303100 Malus domestica HOM05D005446 ORTHO05D006597 9.2e-65 250.4 155 80.6
Haze_23920 Corylus avellana HOM05D005446 ORTHO05D006597 1.4e-60 236.5 155 76.1
Haze_00330 Corylus avellana HOM05D005446 ORTHO05D006597 3.1e-60 235.3 155 76.1
Cfa016130 Carpinus fangiana HOM05D005446 ORTHO05D006597 8.9e-60 233.8 155 75.5
Atru.chr12.2505 Acer truncatum HOM05D005446 ORTHO05D006597 1.2e-59 233.4 155 74.2
Dinv17279 Davidia involucrata HOM05D005446 ORTHO05D006597 1.2e-59 233.4 155 76.1
MBI12_g19204_MAGBIO Magnolia biondii HOM05D005446 ORTHO05D006597 1.2e-59 233.4 155 74.2
COL.COLO4_20178 Corchorus olitorius HOM05D005446 ORTHO05D006597 1.5e-59 233.0 155 74.2
Thecc.04G200100 Theobroma cacao HOM05D005446 ORTHO05D006597 2.0e-59 232.6 155 74.2
Atru.chr12.2528 Acer truncatum HOM05D005446 ORTHO05D006597 2.6e-59 232.3 155 73.5
Duzib151G0274 Durio zibethinus HOM05D005446 ORTHO05D006597 2.6e-59 232.3 155 73.5
MD01G1231100 Malus domestica HOM05D005446 ORTHO05D006597 2.6e-59 232.3 147 79.6
TWI18G0511 Tripterygium wilfordii HOM05D005446 ORTHO05D006597 2.6e-59 232.3 155 72.3
QL09p006048 Quercus lobata HOM05D005446 ORTHO05D006597 3.4e-59 231.9 154 75.3
Cpa.g.sc3.182 Carica papaya HOM05D005446 ORTHO05D006597 5.8e-59 231.1 155 72.9
CiPaw.06G038600 Carya illinoinensis HOM05D005446 ORTHO05D006597 7.5e-59 230.7 155 74.8
Potri.015G001200 Populus trichocarpa HOM05D005446 ORTHO05D006597 4.9e-58 228.0 155 73.5
Actinidia08718 Actinidia chinensis HOM05D005446 ORTHO05D006597 6.4e-58 227.6 155 73.5
Gohir.D07G001000 Gossypium hirsutum HOM05D005446 ORTHO05D006597 6.4e-58 227.6 155 70.3
Eucgr.K00475 Eucalyptus grandis HOM05D005446 ORTHO05D006597 1.9e-57 226.1 155 72.9
Gohir.A07G102600 Gossypium hirsutum HOM05D005446 ORTHO05D006597 2.4e-57 225.7 155 69.0
Eucgr.K00477 Eucalyptus grandis HOM05D005446 ORTHO05D006597 4.1e-57 224.9 155 71.6
Sabra15G0000700 Salix brachista HOM05D005446 ORTHO05D006597 4.1e-57 224.9 155 72.9
Manes.18G108200 Manihot esculenta HOM05D005446 ORTHO05D006597 5.4e-57 224.6 155 73.5
Gorai.001G000500 Gossypium raimondii HOM05D005446 ORTHO05D006597 7.1e-57 224.2 155 69.0
Lj3A584T51 Lonicera japonica HOM05D005446 ORTHO05D006597 7.1e-57 224.2 155 70.3
TAR383G0718 Trochodendron aralioides HOM05D005446 ORTHO05D006597 7.1e-57 224.2 155 70.3
Gorai.001G114700 Gossypium raimondii HOM05D005446 ORTHO05D006597 9.2e-57 223.8 155 68.4
GSVIVG01038676001 Vitis vinifera HOM05D005446 ORTHO05D006597 9.2e-57 223.8 155 72.9
vmacro06473 Vaccinium macrocarpon HOM05D005446 ORTHO05D006597 1.2e-56 223.4 155 69.7
CANSAT64G2376 Cannabis sativa HOM05D005446 ORTHO05D006597 1.6e-56 223.0 155 71.6
Eucgr.L02508 Eucalyptus grandis HOM05D005446 ORTHO05D006597 2.1e-56 222.6 155 71.6
Lj1A1031T79 Lonicera japonica HOM05D005446 ORTHO05D006597 2.1e-56 222.6 155 70.3
CSS0004780 Camellia sinensis var. sinensis HOM05D005446 ORTHO05D006597 2.7e-56 222.2 155 72.3
Ciclev10006132m.g Citrus clementina HOM05D005446 ORTHO05D006597 4.6e-56 221.5 155 73.5
Peaxi162Scf00192g00016 Petunia axillaris HOM05D005446 ORTHO05D006597 1.0e-55 220.3 155 68.4
Rhsim03G0218300 Rhododendron simsii HOM05D005446 ORTHO05D006597 1.0e-55 220.3 155 70.3
Oeu029325.1 Olea europaea HOM05D005446 ORTHO05D006597 1.3e-55 219.9 155 69.7
Gohir.D07G106600 Gossypium hirsutum HOM05D005446 ORTHO05D006597 2.3e-55 219.2 155 67.1
MSTRG.26955 Avicennia marina HOM05D005446 ORTHO05D006597 3.0e-55 218.8 155 68.4
Nn1g09694 Nelumbo nucifera HOM05D005446 ORTHO05D006597 3.0e-55 218.8 155 69.7
Peaxi162Scf00038g02639 Petunia axillaris HOM05D005446 ORTHO05D006597 3.0e-55 218.8 155 67.7
MD07G1302900 Malus domestica HOM05D005446 ORTHO05D006597 5.1e-55 218.0 155 72.9
Gohir.A03G015000 Gossypium hirsutum HOM05D005446 ORTHO05D006597 6.6e-55 217.6 155 68.4
CDE07G1092 Ceratophyllum demersum HOM05D005446 ORTHO05D006597 8.6e-55 217.2 155 68.4
Glyma.02G221100 Glycine max HOM05D005446 ORTHO05D006597 1.1e-54 216.9 155 68.4
Sopen01g002260 Solanum pennellii HOM05D005446 ORTHO05D006597 2.5e-54 215.7 155 67.1
Aqoxy5G00887 Aquilegia oxysepala HOM05D005446 ORTHO05D006597 3.3e-54 215.3 152 69.7
Phvul.001G010300 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 3.3e-54 215.3 155 68.4
Phvul.008G188200 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 3.3e-54 215.3 155 68.4
Potri.015G001000 Populus trichocarpa HOM05D005446 ORTHO05D006597 3.3e-54 215.3 155 70.3
Glyma.14G188600 Glycine max HOM05D005446 ORTHO05D006597 4.3e-54 214.9 155 68.4
Cc02_g16080 Coffea canephora HOM05D005446 ORTHO05D006597 5.6e-54 214.5 155 70.3
PSO170G1626 Papaver somniferum HOM05D005446 ORTHO05D006597 9.5e-54 213.8 155 66.5
Phvul.L008700 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 1.2e-53 213.4 155 67.7
PGSC0003DMG400032145 Solanum tuberosum HOM05D005446 ORTHO05D006597 2.1e-53 212.6 155 65.8
EL10Ac3g05135 Beta vulgaris HOM05D005446 ORTHO05D006597 2.8e-53 212.2 155 67.1
Phvul.003G000356 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 3.6e-53 211.8 155 67.7
ECA247G1253 Erigeron canadensis HOM05D005446 ORTHO05D006597 6.2e-53 211.1 155 65.2
Lalb_Chr10g0102991 Lupinus albus HOM05D005446 ORTHO05D006597 6.2e-53 211.1 155 65.8
PSO782G3129 Papaver somniferum HOM05D005446 ORTHO05D006597 6.2e-53 211.1 155 65.8
Sed0027394 Sechium edule HOM05D005446 ORTHO05D006597 6.2e-53 211.1 155 68.4
HanXRQChr02g0037361 Helianthus annuus HOM05D005446 ORTHO05D006597 1.1e-52 210.3 155 65.2
CSS0007128 Camellia sinensis var. sinensis HOM05D005446 ORTHO05D006597 1.4e-52 209.9 156 68.6
CSS0045409 Camellia sinensis var. sinensis HOM05D005446 ORTHO05D006597 1.4e-52 209.9 156 68.6
Migut.F00126 Erythranthe guttata HOM05D005446 ORTHO05D006597 1.4e-52 209.9 155 66.5
AUR62005952 Chenopodium quinoa HOM05D005446 ORTHO05D006597 3.1e-52 208.8 155 66.5
LjContig00155g0018941 Lotus japonicus HOM05D005446 ORTHO05D006597 6.8e-52 207.6 155 67.7
AUR62028113 Chenopodium quinoa HOM05D005446 ORTHO05D006597 8.9e-52 207.2 155 65.2
Hund09744 Selenicereus undatus HOM05D005446 ORTHO05D006597 1.5e-51 206.5 155 65.2
Medtr5g068650 Medicago truncatula HOM05D005446 ORTHO05D006597 3.4e-51 205.3 152 65.8
ClCG09G010380 Citrullus lanatus HOM05D005446 ORTHO05D006597 5.8e-51 204.5 155 67.1
Ca_05549_v3 Cicer arietinum L. HOM05D005446 ORTHO05D006597 7.6e-51 204.1 152 64.5
VMungo0647G1380 Vigna mungo HOM05D005446 ORTHO05D006597 1.3e-50 203.4 147 68.7
CsaV3_7G024240 Cucumis sativus L. HOM05D005446 ORTHO05D006597 3.8e-50 201.8 155 66.5
DCAR_008034 Daucus carota HOM05D005446 ORTHO05D006597 3.8e-50 201.8 153 64.7
unitig_0.g2433 Utricularia gibba HOM05D005446 ORTHO05D006597 4.9e-50 201.4 155 64.5
MELO3C023673.2 Cucumis melo HOM05D005446 ORTHO05D006597 6.4e-50 201.1 155 67.7
HanXRQChr02g0037371 Helianthus annuus HOM05D005446 ORTHO05D006597 1.4e-49 199.9 150 64.0
SGA_v2.0_scaffold44G16871 Striga asiatica HOM05D005446 ORTHO05D006597 1.4e-49 199.9 174 59.2
Lsat_1_v5_gn_1_26901 Lactuca sativa HOM05D005446 ORTHO05D006597 5.4e-49 198.0 155 63.2
Solyc01g006260.4 Solanum lycopersicum HOM05D005446 ORTHO05D006597 5.4e-49 198.0 145 66.2
TAR629G0354 Trochodendron aralioides HOM05D005446 ORTHO05D006597 9.2e-49 197.2 145 66.2
CAN.G140.1 Capsicum annuum HOM05D005446 ORTHO05D006597 1.6e-48 196.4 155 61.3
Nitab4.5_0005132g0070 Nicotiana tabacum HOM05D005446 ORTHO05D006597 3.5e-48 195.3 127 72.4
Aa31LG10G6780 Aethionema arabicum HOM05D005446 ORTHO05D006597 4.6e-48 194.9 154 62.3
ATR0579G170 Amborella trichopoda HOM05D005446 ORTHO05D006597 6.0e-48 194.5 141 66.7
Eucgr.K00052 Eucalyptus grandis HOM05D005446 ORTHO05D006597 7.8e-48 194.1 150 69.3
CARHR003990 Cardamine hirsuta HOM05D005446 ORTHO05D006597 1.3e-47 193.4 156 62.8
Nitab4.5_0022559g0010 Nicotiana tabacum HOM05D005446 ORTHO05D006597 5.1e-47 191.4 127 70.9
AL1G14320 Arabidopsis lyrata HOM05D005446 ORTHO05D006597 1.1e-46 190.3 156 62.2
Carub.0001s0387 Capsella rubella HOM05D005446 ORTHO05D006597 1.5e-46 189.9 156 61.5
Eucgr.K00059 Eucalyptus grandis HOM05D005446 ORTHO05D006597 1.9e-46 189.5 150 67.3
TPR.G5849 Trifolium pratense HOM05D005446 ORTHO05D006597 1.9e-46 189.5 152 62.5
Zm00001eb200370 Zea mays HOM05D005446 ORTHO05D006597 2.5e-46 189.1 153 60.8
AT1G04635 Arabidopsis thaliana HOM05D005446 ORTHO05D006597 9.6e-46 187.2 156 60.9
HPP92_023794 Vanilla planifolia HOM05D005446 ORTHO05D006597 1.3e-45 186.8 155 60.0
QL04p035447 Quercus lobata HOM05D005446 ORTHO05D006597 2.8e-45 185.7 135 69.6
Ah.13g071020 Amaranthus hybridus HOM05D005446 ORTHO05D006597 6.2e-45 184.5 214 50.0
Thhalv10009004m.g Eutrema salsugineum HOM05D005446 ORTHO05D006597 8.1e-45 184.1 156 59.0
DCAR_019328 Daucus carota HOM05D005446 ORTHO05D006597 1.1e-44 183.7 127 69.3
FAN10G3034 Fragaria x ananassa HOM05D005446 ORTHO05D006597 7.6e-43 177.6 104 87.5
THA.LOC104820657 Tarenaya hassleriana HOM05D005446 ORTHO05D006597 8.4e-42 174.1 156 54.5
SHI13471 Sapria himalayana HOM05D005446 ORTHO05D006597 1.1e-41 173.7 188 50.5
Os04g0295100 Oryza sativa ssp. japonica HOM05D005446 ORTHO05D006597 1.4e-41 173.3 162 56.2
Os05g0270500 Oryza sativa ssp. japonica HOM05D005446 ORTHO05D006597 1.6e-40 169.9 148 58.1
BraA10t42580Z Brassica rapa HOM05D002401 ORTHO05D007109 2.1e-40 169.5 154 54.5
A10p03070 Brassica napus HOM05D002401 ORTHO05D007109 2.7e-40 169.1 154 53.9
BolC5t29066H Brassica oleracea HOM05D002401 ORTHO05D007109 3.5e-40 168.7 154 54.5
C05p02830 Brassica napus HOM05D002401 ORTHO05D007109 4.6e-40 168.3 154 54.5
Thhalv10017414m.g Eutrema salsugineum HOM05D005446 ORTHO05D006597 6.0e-40 167.9 128 62.5
Sp4g14630 Schrenkiella parvula HOM05D005446 ORTHO05D006597 3.0e-39 165.6 151 55.0
Psat2g060440 Pisum sativum HOM05D005446 ORTHO05D006597 1.9e-38 162.9 146 56.2
PGR142G4477 Punica granatum HOM05D005446 ORTHO05D006597 1.6e-37 159.8 153 56.9
Sp1g03470 Schrenkiella parvula HOM05D005446 ORTHO05D006597 1.6e-37 159.8 153 52.9
TAR362G0055 Trochodendron aralioides HOM05D005446 ORTHO05D006597 1.1e-36 157.1 114 66.7
arahy.Tifrunner.gnm1.ann1.PTVQ9K Arachis hypogaea HOM05D005446 ORTHO05D006597 2.2e-34 149.4 106 68.9
Sc13g0010680 Simmondsia chinensis HOM05D005446 ORTHO05D006597 2.2e-34 149.4 99 72.7
arahy.Tifrunner.gnm1.ann1.G1Q0KH Arachis hypogaea HOM05D005446 ORTHO05D006597 2.9e-34 149.1 106 69.8
Ciclev10023849m.g Citrus clementina HOM05D005446 ORTHO05D006597 9.3e-33 144.1 103 68.9
QL09p006020 Quercus lobata HOM05D005446 ORTHO05D006597 1.6e-32 143.3 91 78.0
CDE05G0789 Ceratophyllum demersum HOM05D002553 ORTHO05D002767 2.5e-30 136.0 147 52.4
SEGI_01150 Sequoiadendron giganteum HOM05D005446 ORTHO05D006597 2.1e-29 132.9 144 47.9
Pp3c14_9250 Physcomitrium patens HOM05D005446 ORTHO05D006597 4.0e-28 128.6 153 45.8
Oeu055421.1 Olea europaea HOM05D005446 ORTHO05D006597 1.9e-25 119.8 109 56.9
QL09p006057 Quercus lobata HOM05D000605 ORTHO05D001937 1.9e-25 119.8 83 71.1
AagrBONN_evm.TU.Sc2ySwM_117.1519 Anthoceros agrestis HOM05D005446 ORTHO05D006597 7.1e-25 117.9 129 45.7
TPR.G27917 Trifolium pratense HOM05D005446 ORTHO05D006597 5.1e-23 111.7 153 45.1
SMO356G0648 Selaginella moellendorffii HOM05D005446 ORTHO05D006597 3.8e-18 95.5 153 35.9
Mapoly0096s0024 Marchantia polymorpha HOM05D005446 ORTHO05D006597 1.9e-17 93.2 128 40.6
Psat2g148960 Pisum sativum HOM05D005446 ORTHO05D006597 1.6e-16 90.1 50 82.0
Phvul.003G000382 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 1.8e-15 86.7 61 65.6
Phvul.L006525 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 1.8e-15 86.7 61 65.6
Phvul.L004350 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 1.9e-14 83.2 68 63.2
Cre01.g026100 Chlamydomonas reinhardtii HOM05D005446 ORTHO05D006597 5.7e-14 81.6 140 32.9
MELO3C018158.2 Cucumis melo HOM05D005446 ORTHO05D006597 1.3e-10 70.5 68 55.9
MCO15G566 Micromonas commoda HOM05D005446 ORTHO05D006597 4.2e-09 65.5 118 31.4


User provided reference genes

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