Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0470481 Rosa chinensis HOM05D004644 ORTHO05D005700 0.0e+00 1245.0 621 100.0
FAN05G3668 Fragaria x ananassa HOM05D004644 ORTHO05D005700 1.2e-269 932.9 637 77.2
FAN05G5479 Fragaria x ananassa HOM05D004644 ORTHO05D005700 1.2e-269 932.9 637 77.1
FvH4_6g16560 Fragaria vesca HOM05D004644 ORTHO05D005700 2.8e-269 931.8 637 77.1
FAN09G2255 Fragaria x ananassa HOM05D004644 ORTHO05D005700 6.3e-266 920.6 636 76.1
FAN02G4433 Fragaria x ananassa HOM05D004644 ORTHO05D005700 8.3e-250 867.1 631 73.1
FAN14G1031 Fragaria x ananassa HOM05D004644 ORTHO05D005700 6.8e-244 847.4 609 74.1
Prupe.7G127800 Prunus persica HOM05D004644 ORTHO05D005700 2.5e-201 706.1 660 58.8
MD12G1109200 Malus domestica HOM05D004644 ORTHO05D005700 6.9e-196 688.0 551 64.8
Cfa017634 Carpinus fangiana HOM05D004644 ORTHO05D005700 3.0e-167 592.8 553 56.6
QL07p043006 Quercus lobata HOM05D004644 ORTHO05D005700 1.7e-165 587.0 536 57.5
Potri.006G122800 Populus trichocarpa HOM05D004644 ORTHO05D005700 1.5e-161 573.9 531 57.6
Atru.chr8.1780 Acer truncatum HOM05D004644 ORTHO05D005700 8.8e-159 564.7 545 54.5
Duzib093G1101 Durio zibethinus HOM05D004644 ORTHO05D005700 1.4e-156 557.4 551 53.5
Sed0011501 Sechium edule HOM05D004644 ORTHO05D005700 3.1e-156 556.2 529 52.0
Sabra06G0097000 Salix brachista HOM05D004644 ORTHO05D005700 4.1e-156 555.8 646 50.5
Dinv35798 Davidia involucrata HOM05D004644 ORTHO05D005700 1.3e-154 550.8 535 54.8
TWI53G0078 Tripterygium wilfordii HOM05D004644 ORTHO05D005700 8.6e-154 548.1 545 53.8
Phvul.001G180000 Phaseolus vulgaris HOM05D004644 ORTHO05D005700 8.0e-152 541.6 548 50.7
Gorai.006G162300 Gossypium raimondii HOM05D004644 ORTHO05D005700 3.4e-150 536.2 539 51.6
Gohir.A09G145300 Gossypium hirsutum HOM05D004644 ORTHO05D005700 5.7e-150 535.4 526 53.4
MELO3C024470.2 Cucumis melo HOM05D004644 ORTHO05D005700 7.5e-150 535.0 528 51.5
Gohir.D09G141400 Gossypium hirsutum HOM05D004644 ORTHO05D005700 1.3e-149 534.3 539 51.6
CsaV3_6G039930 Cucumis sativus L. HOM05D004644 ORTHO05D005700 1.0e-146 524.6 528 51.3
ClCG04G009350 Citrullus lanatus HOM05D004644 ORTHO05D005700 1.7e-146 523.9 578 48.4
Lalb_Chr20g0112551 Lupinus albus HOM05D004644 ORTHO05D005700 2.3e-146 523.5 514 51.9
vmacro07303 Vaccinium macrocarpon HOM05D004644 ORTHO05D005700 3.9e-146 522.7 568 49.5
GSVIVG01033660001 Vitis vinifera HOM05D004644 ORTHO05D005700 3.9e-146 522.7 612 47.1
CSS0046520 Camellia sinensis var. sinensis HOM05D004644 ORTHO05D005700 8.6e-146 521.5 639 46.0
Eucgr.A01659 Eucalyptus grandis HOM05D004644 ORTHO05D005700 8.6e-146 521.5 540 49.8
arahy.Tifrunner.gnm1.ann1.W70S5M Arachis hypogaea HOM05D004644 ORTHO05D005700 1.5e-145 520.8 537 50.5
COL.COLO4_26937 Corchorus olitorius HOM05D004644 ORTHO05D005700 1.5e-145 520.8 587 47.5
Lj2C119G5 Lonicera japonica HOM05D004644 ORTHO05D005700 3.1e-143 513.1 538 51.7
TAR633G1934 Trochodendron aralioides HOM05D004644 ORTHO05D005700 3.1e-143 513.1 522 50.8
Oeu045234.3 Olea europaea HOM05D004644 ORTHO05D005700 5.8e-142 508.8 527 50.5
Actinidia28913 Actinidia chinensis HOM05D004644 ORTHO05D005700 3.2e-140 503.1 620 45.3
Lj1g0025951 Lotus japonicus HOM05D004644 ORTHO05D005700 1.6e-139 500.7 576 46.9
Rhsim03G0090100 Rhododendron simsii HOM05D004644 ORTHO05D005700 6.0e-139 498.8 560 47.0
Sopen09g003150 Solanum pennellii HOM05D004644 ORTHO05D005700 3.9e-138 496.1 541 49.5
DCAR_009308 Daucus carota HOM05D004644 ORTHO05D005700 8.6e-138 495.0 515 50.9
PGR004G1497 Punica granatum HOM05D004644 ORTHO05D005700 8.6e-138 495.0 542 50.6
TPR.G32811 Trifolium pratense HOM05D004644 ORTHO05D005700 2.5e-137 493.4 551 47.5
Psat3g041720 Pisum sativum HOM05D004644 ORTHO05D005700 7.3e-137 491.9 537 46.7
EL10Ac7g16657 Beta vulgaris HOM05D004644 ORTHO05D005700 1.8e-135 487.3 544 49.1
Sc02g0001570 Simmondsia chinensis HOM05D004644 ORTHO05D005700 2.2e-133 480.3 535 49.3
Glyma.03G184600 Glycine max HOM05D004644 ORTHO05D005700 4.9e-133 479.2 542 45.8
Solyc09g008330.3 Solanum lycopersicum HOM05D004644 ORTHO05D005700 8.3e-133 478.4 515 50.1
MSTRG.5768 Avicennia marina HOM05D004644 ORTHO05D005700 1.4e-132 477.6 573 45.2
CARHR209890 Cardamine hirsuta HOM05D004644 ORTHO05D005700 3.5e-131 473.0 532 47.4
Lj1g0007058 Lotus japonicus HOM05D004644 ORTHO05D005700 8.6e-130 468.4 558 45.5
VMungo1383G2434 Vigna mungo HOM05D004644 ORTHO05D005700 1.9e-129 467.2 630 42.7
Aqoxy2G01714 Aquilegia oxysepala HOM05D004644 ORTHO05D005700 5.6e-129 465.7 515 47.2
Ca_08912_v3 Cicer arietinum L. HOM05D004644 ORTHO05D005700 2.8e-128 463.4 550 45.5
Carub.0006s0226 Capsella rubella HOM05D004644 ORTHO05D005700 6.2e-128 462.2 520 46.9
THA.LOC104816355 Tarenaya hassleriana HOM05D004644 ORTHO05D005700 1.2e-126 458.0 542 45.6
Medtr7g102280 Medicago truncatula HOM05D004644 ORTHO05D005700 1.5e-126 457.6 535 45.8
BcaB05g21841 Brassica carinata HOM05D004644 ORTHO05D005700 3.4e-126 456.4 537 45.1
ECA238G2777 Erigeron canadensis HOM05D004644 ORTHO05D005700 8.3e-125 451.8 522 43.9
AUR62042062 Chenopodium quinoa HOM05D004644 ORTHO05D005700 3.2e-124 449.9 550 46.4
AUR62026918 Chenopodium quinoa HOM05D004644 ORTHO05D005700 2.1e-123 447.2 550 45.8
BolC2t06098H Brassica oleracea HOM05D004644 ORTHO05D005700 3.0e-122 443.4 520 45.8
BraA02t04761Z Brassica rapa HOM05D004644 ORTHO05D005700 3.0e-122 443.4 521 45.7
AT5G03450 Arabidopsis thaliana HOM05D004644 ORTHO05D005700 3.3e-121 439.9 532 44.5
Sp6g39290 Schrenkiella parvula HOM05D004644 ORTHO05D005700 5.6e-121 439.1 538 45.4
AL6G12810 Arabidopsis lyrata HOM05D004644 ORTHO05D005700 9.6e-121 438.3 532 44.0
PSO339G1979 Papaver somniferum HOM05D004644 ORTHO05D005700 3.6e-120 436.4 508 46.1
Nitab4.5_0000578g0020 Nicotiana tabacum HOM05D004644 ORTHO05D005700 2.6e-118 430.3 572 43.9
Haze_20518 Corylus avellana HOM05D004644 ORTHO05D005700 2.2e-117 427.2 396 55.6
HanXRQChr14g0432961 Helianthus annuus HOM05D004644 ORTHO05D005700 4.9e-117 426.0 511 43.6
C02p01080 Brassica napus HOM05D004644 ORTHO05D005700 1.4e-116 424.5 539 43.8
Lsat_1_v5_gn_2_30721 Lactuca sativa HOM05D004644 ORTHO05D005700 1.6e-115 421.0 601 38.6
Migut.J00643 Erythranthe guttata HOM05D004644 ORTHO05D005700 2.8e-112 410.2 466 47.9
Thhalv10013047m.g Eutrema salsugineum HOM05D004644 ORTHO05D005700 6.2e-112 409.1 531 43.5
QL08p054123 Quercus lobata HOM05D004644 ORTHO05D005700 3.1e-111 406.8 588 41.3
Potri.010G228000 Populus trichocarpa HOM05D004644 ORTHO05D005700 2.6e-110 403.7 517 42.7
Cpa.g.sc102.18 Carica papaya HOM05D004644 ORTHO05D005700 7.3e-105 385.6 435 48.5
SGA_v2.0_scaffold75G24833 Striga asiatica HOM05D004644 ORTHO05D005700 3.6e-104 383.3 576 39.8
Manes.09G065000 Manihot esculenta HOM05D004644 ORTHO05D005700 9.0e-103 378.6 385 51.7
CARHR209550 Cardamine hirsuta HOM05D004644 ORTHO05D005700 6.4e-101 372.5 508 40.9
MBI18_g00904_MAGBIO Magnolia biondii HOM05D004644 ORTHO05D005700 1.1e-100 371.7 484 42.6
Cc06_g04370 Coffea canephora HOM05D004644 ORTHO05D005700 3.9e-98 363.2 370 52.4
SGA_v2.0_scaffold40G15487 Striga asiatica HOM05D004644 ORTHO05D005700 2.1e-96 357.5 523 38.6
Manes.07G133120 Manihot esculenta HOM05D004644 ORTHO05D005700 1.4e-95 354.8 507 40.0
Peaxi162Scf00722g00210 Petunia axillaris HOM05D004644 ORTHO05D005700 1.4e-95 354.8 521 41.1
Thecc.05G069300 Theobroma cacao HOM05D004644 ORTHO05D005700 1.8e-95 354.4 432 47.2
PGSC0003DMG401003893 Solanum tuberosum HOM05D004644 ORTHO05D005700 2.4e-95 354.0 352 52.0
Aa31LG1G21710 Aethionema arabicum HOM05D004644 ORTHO05D005700 1.5e-94 351.3 455 44.6
Prupe.2G207900 Prunus persica HOM05D004644 ORTHO05D005700 1.4e-92 344.7 517 39.8
PSO801G0701 Papaver somniferum HOM05D004644 ORTHO05D005700 4.5e-86 323.2 341 49.9
unitig_8.g4114 Utricularia gibba HOM05D004644 ORTHO05D005700 1.3e-85 321.6 545 35.4
Os10g0545600 Oryza sativa ssp. japonica HOM05D004644 ORTHO05D005700 2.2e-85 320.9 624 35.6
Nitab4.5_0004476g0040 Nicotiana tabacum HOM05D004644 ORTHO05D005700 3.8e-85 320.1 454 43.0
AL6G13290 Arabidopsis lyrata HOM05D004644 ORTHO05D005700 1.1e-81 308.5 431 41.8
Zm00001eb393970 Zea mays HOM05D004644 ORTHO05D005700 1.6e-80 304.7 503 36.8
CiPaw.09G171100 Carya illinoinensis HOM05D004644 ORTHO05D005700 1.0e-77 295.4 251 62.5
Zm00001eb000650 Zea mays HOM05D004644 ORTHO05D005700 1.4e-74 285.0 548 33.4
Zm00001eb393990 Zea mays HOM05D004644 ORTHO05D005700 1.8e-74 284.6 506 35.4
Mapoly0033s0098 Marchantia polymorpha HOM05D004644 ORTHO05D005700 1.1e-68 265.4 597 30.2
Pp3c22_3930 Physcomitrium patens HOM05D004644 ORTHO05D005700 7.0e-63 246.1 658 30.9
ATR0763G089 Amborella trichopoda HOM05D004644 ORTHO05D005700 2.0e-62 244.6 313 42.8
MD01G1102300 Malus domestica HOM05D004644 ORTHO05D005700 3.2e-60 237.3 310 44.8
CSS0030902 Camellia sinensis var. sinensis HOM05D004644 ORTHO05D005700 1.6e-59 235.0 255 46.7
CDE02G0420 Ceratophyllum demersum HOM05D004644 ORTHO05D005700 2.1e-59 234.6 343 39.7
Actinidia26658 Actinidia chinensis HOM05D004644 ORTHO05D005700 4.7e-59 233.4 221 56.1
arahy.Tifrunner.gnm1.ann1.K7JVCN Arachis hypogaea HOM05D004644 ORTHO05D005700 3.2e-52 210.7 275 42.2
Atru.chr8.1779 Acer truncatum HOM05D004644 ORTHO05D005700 4.0e-42 177.2 127 63.8
CBR_g31861 Chara braunii HOM05D004644 ORTHO05D005700 8.8e-42 176.0 751 24.4
Atru.chr8.1778 Acer truncatum HOM05D004644 ORTHO05D005700 3.4e-41 174.1 121 67.8
Cpa.g.sc102.17 Carica papaya HOM05D004644 ORTHO05D005700 1.3e-40 172.2 124 63.7
Haze_20519 Corylus avellana HOM05D004644 ORTHO05D005700 4.5e-38 163.7 156 58.3
Prupe.7G127600 Prunus persica HOM05D004644 ORTHO05D005700 4.5e-38 163.7 161 55.3
Lj3C987G12 Lonicera japonica HOM05D004644 ORTHO05D005700 5.0e-37 160.2 140 52.1
PGSC0003DMG402003893 Solanum tuberosum HOM05D004644 ORTHO05D005700 2.1e-35 154.8 121 58.7
CSS0001913 Camellia sinensis var. sinensis HOM05D004644 ORTHO05D005700 2.9e-32 144.4 117 55.6
Sc02g0001560 Simmondsia chinensis HOM05D004644 ORTHO05D005700 5.4e-31 140.2 104 54.8
Cc06_g04380 Coffea canephora HOM05D004644 ORTHO05D005700 7.0e-31 139.8 95 58.9
HanXRQChr13g0400851 Helianthus annuus HOM05D004644 ORTHO05D005700 1.2e-30 139.0 93 64.5
ECA233G2118 Erigeron canadensis HOM05D004644 ORTHO05D005700 2.7e-30 137.9 115 54.8
Lsat_1_v5_gn_6_24500 Lactuca sativa HOM05D004644 ORTHO05D005700 4.6e-30 137.1 160 45.0
Lsat_1_v5_gn_6_24480 Lactuca sativa HOM05D004644 ORTHO05D005700 7.8e-30 136.3 111 54.1
Glyma.19G185000 Glycine max HOM05D004644 ORTHO05D005700 3.6e-27 127.5 95 57.9
Nn2g13824 Nelumbo nucifera HOM05D004644 ORTHO05D005700 5.8e-25 120.2 149 45.6
COL.COLO4_26936 Corchorus olitorius HOM05D004644 ORTHO05D005700 7.5e-25 119.8 110 52.7
MCO15G141 Micromonas commoda HOM05D004644 ORTHO05D005700 2.9e-24 117.9 409 29.1
Sabra10G0176300 Salix brachista HOM05D004644 ORTHO05D005700 1.1e-23 115.9 82 56.1
MD01G1102200 Malus domestica HOM05D004644 ORTHO05D005700 1.2e-22 112.5 121 44.6
MD12G1109100 Malus domestica HOM05D004644 ORTHO05D005700 2.3e-21 108.2 253 34.8
PGR004G0361 Punica granatum HOM05D004644 ORTHO05D005700 2.5e-20 104.8 79 64.6
SEGI_40598 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 4.3e-20 104.0 114 43.0
HanXRQChr02g0051711 Helianthus annuus HOM05D004644 ORTHO05D005700 9.5e-20 102.8 69 58.0
Atru.chr8.1774 Acer truncatum HOM05D004644 ORTHO05D005700 1.6e-19 102.1 77 59.7
PGR004G0952 Punica granatum HOM05D004644 ORTHO05D005700 6.2e-19 100.1 79 62.0
PSO801G0041 Papaver somniferum HOM05D004644 ORTHO05D005700 1.9e-15 88.6 125 37.6
FvH4_7g08751 Fragaria vesca HOM05D004644 ORTHO05D005700 9.2e-15 86.3 92 45.7
Os03g0108200 Oryza sativa ssp. japonica HOM05D004644 ORTHO05D005700 2.1e-14 85.1 84 39.3
SEGI_17091 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 3.5e-14 84.3 197 30.5
ATR0763G245 Amborella trichopoda HOM05D004644 ORTHO05D005700 7.3e-12 76.6 69 44.9
SEGI_16111 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 9.5e-12 76.3 75 46.7
Sabra10G0175900 Salix brachista HOM05D004644 ORTHO05D005700 8.1e-11 73.2 96 39.6
PSO339G3403 Papaver somniferum HOM05D004644 ORTHO05D005700 1.4e-10 72.4 108 31.5
PSO801G0518 Papaver somniferum HOM05D004644 ORTHO05D005700 1.8e-10 72.0 100 37.0
SEGI_30494 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 1.8e-10 72.0 76 38.2
Lj3C988T3 Lonicera japonica HOM05D004644 ORTHO05D005700 5.2e-10 70.5 76 47.4
SEGI_09432 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 1.5e-09 68.9 100 34.0
SEGI_20900 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 1.5e-09 68.9 100 34.0
Glyma.18G219501 Glycine max HOM05D000076 ORTHO05D005700 2.6e-09 68.2 63 52.4
ECA232G2196 Erigeron canadensis HOM05D004644 ORTHO05D005700 9.9e-09 66.2 90 41.1
Lj1g0014168 Lotus japonicus HOM05D004644 ORTHO05D007522 1.3e-08 65.9 60 53.3
AT5G03750 Arabidopsis thaliana HOM05D004644 ORTHO05D005700 2.9e-08 64.7 47 59.6
SEGI_00616 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 4.9e-08 63.9 115 27.8
SEGI_22440 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 6.4e-08 63.5 40 57.5
Glyma.07G162100 Glycine max HOM05D003568 ORTHO05D004104 4.1e-07 60.8 55 50.9
Lj3C988T4 Lonicera japonica HOM05D004644 ORTHO05D005700 7.8e-06 56.6 41 58.5


User provided reference genes

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