Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0468911 Rosa chinensis HOM05D003885 ORTHO05D004623 1.4e-76 289.7 154 100.0
Peaxi162Scf00139g01026 Petunia axillaris HOM05D003885 ORTHO05D004623 4.4e-27 125.2 184 45.7
Nitab4.5_0010643g0040 Nicotiana tabacum HOM05D003885 ORTHO05D004623 7.1e-25 117.9 209 42.1
unitig_61.g26133 Utricularia gibba HOM05D003885 ORTHO05D004623 9.3e-25 117.5 224 39.7
DCAR_003369 Daucus carota HOM05D003885 ORTHO05D004623 1.6e-24 116.7 217 39.6
Nitab4.5_0005478g0040 Nicotiana tabacum HOM05D003885 ORTHO05D004623 1.6e-24 116.7 202 42.6
Nn1g07757 Nelumbo nucifera HOM05D003885 ORTHO05D004623 2.1e-24 116.3 226 39.8
AUR62035674 Chenopodium quinoa HOM05D003885 ORTHO05D004623 3.5e-24 115.5 191 41.9
DCAR_019010 Daucus carota HOM05D003885 ORTHO05D004623 3.5e-24 115.5 220 39.1
Lj1C893G21 Lonicera japonica HOM05D003885 ORTHO05D004623 3.5e-24 115.5 206 40.8
vmacro11612 Vaccinium macrocarpon HOM05D003885 ORTHO05D004623 3.5e-24 115.5 198 40.4
SalBow2G3065 Salvia bowleyana HOM05D003885 ORTHO05D004623 4.6e-24 115.2 205 42.0
FAN14G2004 Fragaria x ananassa HOM05D003885 ORTHO05D004623 7.8e-24 114.4 229 42.8
Dinv40883 Davidia involucrata HOM05D003885 ORTHO05D004623 1.0e-23 114.0 197 40.6
FAN05G2176 Fragaria x ananassa HOM05D003885 ORTHO05D004623 1.7e-23 113.2 230 39.6
PGR083G1050 Punica granatum HOM05D003885 ORTHO05D004623 3.0e-23 112.5 227 37.4
CsaV3_3G004310 Cucumis sativus L. HOM05D003885 ORTHO05D004623 3.9e-23 112.1 226 38.5
FvH4_6g22570 Fragaria vesca HOM05D003885 ORTHO05D004623 3.9e-23 112.1 229 39.3
FAN14G0574 Fragaria x ananassa HOM05D003885 ORTHO05D004623 3.9e-23 112.1 229 39.3
ClCG10G004480 Citrullus lanatus HOM05D003885 ORTHO05D004623 5.1e-23 111.7 227 37.9
MELO3C014122.2 Cucumis melo HOM05D003885 ORTHO05D004623 5.1e-23 111.7 227 38.3
Prupe.6G027200 Prunus persica HOM05D003885 ORTHO05D004623 6.6e-23 111.3 225 38.7
CANSAT56G2895 Cannabis sativa HOM05D003885 ORTHO05D004623 8.7e-23 110.9 226 37.2
QL08p003216 Quercus lobata HOM05D003885 ORTHO05D004623 8.7e-23 110.9 228 36.8
Sed0017804 Sechium edule HOM05D003885 ORTHO05D004623 8.7e-23 110.9 225 38.2
FAN09G2902 Fragaria x ananassa HOM05D003885 ORTHO05D004623 1.1e-22 110.5 230 39.1
SalBow2G3218 Salvia bowleyana HOM05D003885 ORTHO05D004623 1.1e-22 110.5 221 38.9
RcHm_v2.0_Chr3g0480061 Rosa chinensis HOM05D003885 ORTHO05D004623 1.5e-22 110.2 230 38.7
TAR627G0008 Trochodendron aralioides HOM05D003885 ORTHO05D004623 1.9e-22 109.8 227 38.3
TAR629G2602 Trochodendron aralioides HOM05D003885 ORTHO05D004623 2.5e-22 109.4 225 39.1
unitig_0.g990 Utricularia gibba HOM05D003885 ORTHO05D004623 2.5e-22 109.4 224 38.8
Haze_09860 Corylus avellana HOM05D003885 ORTHO05D004623 4.3e-22 108.6 227 37.4
SalBow8G3434 Salvia bowleyana HOM05D003885 ORTHO05D004623 4.3e-22 108.6 220 36.4
Cc05_g15250 Coffea canephora HOM05D003885 ORTHO05D004623 5.6e-22 108.2 222 37.8
ECA246G5298 Erigeron canadensis HOM05D003885 ORTHO05D004623 7.3e-22 107.8 221 37.6
MSTRG.14500 Avicennia marina HOM05D003885 ORTHO05D004623 1.3e-21 107.1 222 37.4
Cfa016929 Carpinus fangiana HOM05D003885 ORTHO05D004623 1.3e-21 107.1 227 37.0
SalBow2G0786 Salvia bowleyana HOM05D003885 ORTHO05D004623 1.3e-21 107.1 220 36.4
Manes.03G143400 Manihot esculenta HOM05D003885 ORTHO05D004623 1.6e-21 106.7 228 39.0
Actinidia30379 Actinidia chinensis HOM05D003885 ORTHO05D004623 2.1e-21 106.3 227 36.6
ATR1153G045 Amborella trichopoda HOM05D003885 ORTHO05D004623 2.1e-21 106.3 227 41.0
Glyma.05G059200 Glycine max HOM05D003885 ORTHO05D004623 2.1e-21 106.3 226 36.3
CAN.G492.53 Capsicum annuum HOM05D003885 ORTHO05D004623 2.8e-21 105.9 226 37.6
Aqoxy3G02916 Aquilegia oxysepala HOM05D003885 ORTHO05D004623 3.6e-21 105.5 225 37.3
Glyma.17G141500 Glycine max HOM05D003885 ORTHO05D004623 3.6e-21 105.5 226 38.1
MD03G1032500 Malus domestica HOM05D003885 ORTHO05D004623 3.6e-21 105.5 227 37.4
Potri.001G370366 Populus trichocarpa HOM05D003885 ORTHO05D004623 3.6e-21 105.5 228 37.3
GSVIVG01014735001 Vitis vinifera HOM05D003885 ORTHO05D004623 3.6e-21 105.5 227 38.3
Lj1g0011673 Lotus japonicus HOM05D003885 ORTHO05D004623 4.8e-21 105.1 227 36.1
Thhalv10021450m.g Eutrema salsugineum HOM05D003885 ORTHO05D004623 6.2e-21 104.8 229 38.0
Zm00001eb338740 Zea mays HOM05D003885 ORTHO05D004623 6.2e-21 104.8 227 35.2
MD11G1036400 Malus domestica HOM05D003885 ORTHO05D004623 8.1e-21 104.4 227 37.0
SalBow2G1425 Salvia bowleyana HOM05D003885 ORTHO05D004623 8.1e-21 104.4 220 35.9
PGSC0003DMG400008684 Solanum tuberosum HOM05D003885 ORTHO05D004623 8.1e-21 104.4 229 39.3
Thecc.07G008300 Theobroma cacao HOM05D003885 ORTHO05D004623 8.1e-21 104.4 225 37.3
VMungo0251G1810 Vigna mungo HOM05D003885 ORTHO05D004623 8.1e-21 104.4 225 40.9
CSS0008032 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 1.1e-20 104.0 228 36.8
CSS0014433 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 1.1e-20 104.0 228 36.8
CiPaw.12G140300 Carya illinoinensis HOM05D003885 ORTHO05D004623 1.1e-20 104.0 227 37.0
TWI39G1241 Tripterygium wilfordii HOM05D003885 ORTHO05D004623 1.1e-20 104.0 223 35.0
MSTRG.13030 Avicennia marina HOM05D003885 ORTHO05D004623 1.4e-20 103.6 223 38.6
BcaB04g18746 Brassica carinata HOM05D003885 ORTHO05D004623 1.4e-20 103.6 232 37.1
Migut.M01631 Erythranthe guttata HOM05D003885 ORTHO05D004623 1.4e-20 103.6 220 35.9
Sc03g0011570 Simmondsia chinensis HOM05D003885 ORTHO05D004623 1.4e-20 103.6 229 36.2
Ah.13g073470 Amaranthus hybridus HOM05D003885 ORTHO05D004623 1.8e-20 103.2 232 35.8
Os06g0106100 Oryza sativa ssp. japonica HOM05D003885 ORTHO05D004623 1.8e-20 103.2 228 34.2
Psat0s1834g0040 Pisum sativum HOM05D003885 ORTHO05D004623 1.8e-20 103.2 224 38.4
TPR.G2621 Trifolium pratense HOM05D003885 ORTHO05D004623 1.8e-20 103.2 225 37.3
C03p46210 Brassica napus HOM05D003885 ORTHO05D004623 2.4e-20 102.8 211 37.9
Nitab4.5_0003328g0110 Nicotiana tabacum HOM05D003885 ORTHO05D004623 2.4e-20 102.8 226 38.9
Hund01874 Selenicereus undatus HOM05D003885 ORTHO05D004623 2.4e-20 102.8 228 36.4
Hund01875 Selenicereus undatus HOM05D003885 ORTHO05D004623 2.4e-20 102.8 228 36.4
Aa31LG8G410 Aethionema arabicum HOM05D003885 ORTHO05D004623 3.1e-20 102.4 228 35.5
arahy.Tifrunner.gnm1.ann1.JC0UDE Arachis hypogaea HOM05D003885 ORTHO05D004623 3.1e-20 102.4 228 35.5
Oeu039420.1 Olea europaea HOM05D003885 ORTHO05D004623 3.1e-20 102.4 219 37.9
BcaB06g25479 Brassica carinata HOM05D003885 ORTHO05D004623 4.0e-20 102.1 229 37.1
Medtr4g100970 Medicago truncatula HOM05D003885 ORTHO05D004623 4.0e-20 102.1 225 36.0
Phvul.003G220300 Phaseolus vulgaris HOM05D003885 ORTHO05D004623 4.0e-20 102.1 226 37.6
Sp3g11380 Schrenkiella parvula HOM05D003885 ORTHO05D004623 4.0e-20 102.1 229 37.1
Solyc10g005800.3 Solanum lycopersicum HOM05D003885 ORTHO05D004623 4.0e-20 102.1 230 39.1
Sopen10g001770 Solanum pennellii HOM05D003885 ORTHO05D004623 4.0e-20 102.1 230 39.1
Zm00001eb119790 Zea mays HOM05D003885 ORTHO05D004623 4.0e-20 102.1 228 34.6
Ciclev10009386m.g Citrus clementina HOM05D003885 ORTHO05D004623 5.3e-20 101.7 228 37.3
Lsat_1_v5_gn_5_188801 Lactuca sativa HOM05D003885 ORTHO05D004623 5.3e-20 101.7 229 34.1
THA.LOC104810295 Tarenaya hassleriana HOM05D003885 ORTHO05D004623 5.3e-20 101.7 228 33.8
AagrBONN_evm.TU.Sc2ySwM_228.690 Anthoceros agrestis HOM05D003885 ORTHO05D004623 6.9e-20 101.3 212 36.3
A05p36370 Brassica napus HOM05D003885 ORTHO05D004623 6.9e-20 101.3 229 37.1
BraA05t22437Z Brassica rapa HOM05D003885 ORTHO05D004623 6.9e-20 101.3 229 37.1
COL.COLO4_07729 Corchorus olitorius HOM05D003885 ORTHO05D004623 6.9e-20 101.3 227 36.1
Lj4g0022976 Lotus japonicus HOM05D003885 ORTHO05D004623 6.9e-20 101.3 226 35.0
Atru.chr2.3832 Acer truncatum HOM05D003885 ORTHO05D004623 9.0e-20 100.9 227 34.8
Ah.06g181560 Amaranthus hybridus HOM05D003885 ORTHO05D004623 9.0e-20 100.9 230 35.7
C01p51880 Brassica napus HOM05D003885 ORTHO05D004623 9.0e-20 100.9 229 36.7
BolC1t05136H Brassica oleracea HOM05D003885 ORTHO05D004623 9.0e-20 100.9 229 36.7
Ca_21964_v3 Cicer arietinum L. HOM05D003885 ORTHO05D004623 9.0e-20 100.9 227 34.8
PSO210G5551 Papaver somniferum HOM05D003885 ORTHO05D004623 9.0e-20 100.9 222 37.4
Phvul.008G217400 Phaseolus vulgaris HOM05D003885 ORTHO05D004623 9.0e-20 100.9 211 37.0
AL3G24950 Arabidopsis lyrata HOM05D003885 ORTHO05D004623 1.2e-19 100.5 228 38.2
A01p40350 Brassica napus HOM05D003885 ORTHO05D004623 1.2e-19 100.5 229 34.1
BraA01t04070Z Brassica rapa HOM05D003885 ORTHO05D004623 1.2e-19 100.5 229 34.1
Duzib213G0370 Durio zibethinus HOM05D003885 ORTHO05D004623 1.2e-19 100.5 227 36.1
Sopen07g033990 Solanum pennellii HOM05D003885 ORTHO05D004623 1.2e-19 100.5 227 36.1
CARHR087790 Cardamine hirsuta HOM05D003885 ORTHO05D004623 1.5e-19 100.1 228 34.6
THA.LOC104815689 Tarenaya hassleriana HOM05D003885 ORTHO05D004623 1.5e-19 100.1 232 36.6
HPP92_015188 Vanilla planifolia HOM05D003885 ORTHO05D004623 2.0e-19 99.8 229 35.4
AT3G13200 Arabidopsis thaliana HOM05D003885 ORTHO05D004623 2.6e-19 99.4 228 37.7
A03p38080 Brassica napus HOM05D003885 ORTHO05D004623 2.6e-19 99.4 229 36.2
C05p54750 Brassica napus HOM05D003885 ORTHO05D004623 2.6e-19 99.4 230 37.0
BolC3t16892H Brassica oleracea HOM05D003885 ORTHO05D004623 2.6e-19 99.4 229 36.2
BolC5t34149H Brassica oleracea HOM05D003885 ORTHO05D004623 2.6e-19 99.4 230 37.0
BraA03t12961Z Brassica rapa HOM05D003885 ORTHO05D004623 2.6e-19 99.4 229 36.2
Gohir.D13G134400 Gossypium hirsutum HOM05D003885 ORTHO05D004623 2.6e-19 99.4 228 35.5
Gorai.013G150700 Gossypium raimondii HOM05D003885 ORTHO05D004623 3.4e-19 99.0 229 35.4
Lalb_Chr16g0386671 Lupinus albus HOM05D003885 ORTHO05D004623 3.4e-19 99.0 227 35.7
MBI11_g04749_MAGBIO Magnolia biondii HOM05D003885 ORTHO05D004623 3.4e-19 99.0 231 33.8
Rhsim06G0232400 Rhododendron simsii HOM05D003885 ORTHO05D004623 3.4e-19 99.0 243 32.9
THA.LOC104822723 Tarenaya hassleriana HOM05D003885 ORTHO05D004623 3.4e-19 99.0 228 37.7
BcaC05g29203 Brassica carinata HOM05D003885 ORTHO05D004623 4.4e-19 98.6 224 33.5
Gohir.A13G131100 Gossypium hirsutum HOM05D003885 ORTHO05D004623 4.4e-19 98.6 228 35.5
AUR62017134 Chenopodium quinoa HOM05D003885 ORTHO05D004623 5.8e-19 98.2 226 34.5
Carub.0003s1256 Capsella rubella HOM05D003885 ORTHO05D004623 7.6e-19 97.8 228 36.4
Duzib170G0277 Durio zibethinus HOM05D003885 ORTHO05D004623 9.9e-19 97.4 223 36.3
HanXRQChr08g0233271 Helianthus annuus HOM05D003885 ORTHO05D004623 9.9e-19 97.4 225 34.2
Lalb_Chr05g0221281 Lupinus albus HOM05D003885 ORTHO05D004623 9.9e-19 97.4 227 37.4
HanXRQChr05g0160321 Helianthus annuus HOM05D003885 ORTHO05D004623 1.3e-18 97.1 224 33.5
PSO210G1946 Papaver somniferum HOM05D003885 ORTHO05D004623 1.3e-18 97.1 223 33.6
Eucgr.F02030 Eucalyptus grandis HOM05D003885 ORTHO05D004623 2.9e-18 95.9 229 33.6
TWI38G2335 Tripterygium wilfordii HOM05D003885 ORTHO05D004623 4.9e-18 95.1 227 33.0
CBR_g58788 Chara braunii HOM05D003885 ORTHO05D004623 8.4e-18 94.4 225 35.6
EL10Ac4g07536 Beta vulgaris HOM05D003885 ORTHO05D004623 1.9e-17 93.2 240 32.5
Pp3c5_15120 Physcomitrium patens HOM05D003885 ORTHO05D004623 1.9e-17 93.2 224 34.8
PGSC0003DMG400022160 Solanum tuberosum HOM05D003885 ORTHO05D004623 1.9e-17 93.2 233 34.3
FAN02G3468 Fragaria x ananassa HOM05D003885 ORTHO05D004623 6.0e-16 88.2 212 36.8
Mapoly0072s0064 Marchantia polymorpha HOM05D003885 ORTHO05D004623 6.0e-16 88.2 226 31.9
Sed0004751 Sechium edule HOM05D003885 ORTHO05D004623 6.0e-16 88.2 220 38.6
Lsat_1_v5_gn_5_2000 Lactuca sativa HOM05D003885 ORTHO05D004623 8.7e-15 84.3 270 31.1
CSS0035354 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 3.3e-14 82.4 190 38.4
Nitab4.5_0000152g0340 Nicotiana tabacum HOM05D003885 ORTHO05D004623 4.3e-14 82.0 209 33.5
CAN.G1427.13 Capsicum annuum HOM05D000822 ORTHO05D004949 1.6e-13 80.1 65 53.8
BcaC01g04006 Brassica carinata HOM05D003885 ORTHO05D004623 2.1e-13 79.7 100 43.0
MBI19_g41323_MAGBIO Magnolia biondii HOM05D003885 ORTHO05D004623 2.1e-13 79.7 58 63.8
SMO356G0623 Selaginella moellendorffii HOM05D003885 ORTHO05D004623 4.8e-13 78.6 229 31.4
arahy.Tifrunner.gnm1.ann1.BGFV7A Arachis hypogaea HOM05D003885 ORTHO05D004623 8.1e-13 77.8 65 58.5
Sabra16G0243800 Salix brachista HOM05D003885 ORTHO05D004623 1.4e-12 77.0 243 30.0
TPR.G37600 Trifolium pratense HOM05D003885 ORTHO05D004623 1.8e-12 76.6 58 62.1
C05p54720 Brassica napus HOM05D003885 ORTHO05D004623 3.1e-12 75.9 54 61.1
Hma1.2p1_0193F.1_g083890 Hydrangea macrophylla HOM05D003885 ORTHO05D004623 3.1e-12 75.9 104 42.3
SalBow8G5188 Salvia bowleyana HOM05D003885 ORTHO05D004623 4.0e-12 75.5 56 62.5
Solyc07g065800.3 Solanum lycopersicum HOM05D003885 ORTHO05D004623 1.2e-11 73.9 60 60.0
Hma1.2p1_0133F.1_g061260 Hydrangea macrophylla HOM05D003885 ORTHO05D004623 4.5e-11 72.0 104 40.4
Zm00001eb157240 Zea mays HOM05D003885 ORTHO05D004623 4.5e-11 72.0 72 48.6
MCO14G028 Micromonas commoda HOM05D003885 ORTHO05D004623 9.9e-11 70.9 223 29.6
MCO14G027 Micromonas commoda HOM05D003885 ORTHO05D004623 2.9e-10 69.3 73 47.9
COL.COLO4_09698 Corchorus olitorius HOM05D003885 ORTHO05D004623 1.4e-09 67.0 66 51.5
Hma1.2p1_0133F.1_g061250 Hydrangea macrophylla HOM05D003885 ORTHO05D004623 1.4e-09 67.0 64 62.5
SHI27704 Sapria himalayana HOM05D003885 ORTHO05D004623 1.9e-09 66.6 64 60.9
Nn1g07559 Nelumbo nucifera HOM05D003885 ORTHO05D004623 4.2e-09 65.5 64 60.9
CSS0021051 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 5.5e-09 65.1 62 61.3
SGA_v2.0_scaffold8G04417 Striga asiatica HOM05D003885 ORTHO05D004623 5.5e-09 65.1 64 59.4
Cre24.g755447 Chlamydomonas reinhardtii HOM05D003885 ORTHO05D004623 9.3e-09 64.3 102 37.3
Actinidia10568 Actinidia chinensis HOM05D003885 ORTHO05D004623 1.6e-08 63.5 64 57.8
BcaB04g21002 Brassica carinata HOM05D003885 ORTHO05D004623 1.6e-08 63.5 90 38.9
SalBow2G2880 Salvia bowleyana HOM05D003885 ORTHO05D004623 1.6e-08 63.5 64 57.8
TPR.G37597 Trifolium pratense HOM05D003885 ORTHO05D004623 2.1e-08 63.2 64 57.8
SalBow2G0143 Salvia bowleyana HOM05D003885 ORTHO05D004623 6.0e-08 61.6 64 56.2
PRCOL_00003569 Prasinoderma coloniale HOM05D003885 ORTHO05D004623 1.3e-07 60.5 178 30.9
CSS0032461 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 5.1e-07 58.5 65 46.2
SalBow2G2704 Salvia bowleyana HOM05D003885 ORTHO05D004623 5.1e-07 58.5 64 54.7


User provided reference genes

Program Settings