Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0464711 Rosa chinensis HOM05D004276 ORTHO05D005126 2.3e-23 111.3 53 100.0
RcHm_v2.0_Chr1g0326781 Rosa chinensis HOM05D004276 ORTHO05D005126 2.4e-09 64.7 33 87.9
RcHm_v2.0_Chr5g0018241 Rosa chinensis HOM05D004276 ORTHO05D005126 7.1e-09 63.2 37 75.7
Oeu004920.1 Olea europaea HOM05D004276 ORTHO05D005126 1.2e-08 62.4 35 82.9
Oeu048599.1 Olea europaea HOM05D004276 ORTHO05D005126 1.2e-08 62.4 35 82.9
Atru.chr5.606 Acer truncatum HOM05D004276 ORTHO05D005126 4.6e-08 60.5 35 80.0
Actinidia10089 Actinidia chinensis HOM05D004276 ORTHO05D005126 4.6e-08 60.5 35 80.0
Actinidia20176 Actinidia chinensis HOM05D004276 ORTHO05D005126 4.6e-08 60.5 35 80.0
Aa31LG1G27620 Aethionema arabicum HOM05D004276 ORTHO05D005126 4.6e-08 60.5 35 80.0
ATR0580G146 Amborella trichopoda HOM05D000306 ORTHO05D005993 4.6e-08 60.5 35 80.0
Aqoxy7G00185 Aquilegia oxysepala HOM05D004276 ORTHO05D005126 4.6e-08 60.5 35 80.0
AL1G39200 Arabidopsis lyrata HOM05D004276 ORTHO05D005126 4.6e-08 60.5 35 80.0
MSTRG.17308 Avicennia marina HOM05D004276 ORTHO05D005126 4.6e-08 60.5 35 80.0
EL10Ac1g00335 Beta vulgaris HOM05D004276 ORTHO05D005126 4.6e-08 60.5 35 80.0
CSS0045220 Camellia sinensis var. sinensis HOM05D004276 ORTHO05D005126 4.6e-08 60.5 35 80.0
CAN.G1143.25 Capsicum annuum HOM05D004276 ORTHO05D005126 4.6e-08 60.5 35 80.0
Cpa.g.sc184.11 Carica papaya HOM05D004276 ORTHO05D005126 4.6e-08 60.5 35 80.0
Cfa003820 Carpinus fangiana HOM05D004276 ORTHO05D005126 4.6e-08 60.5 35 80.0
CiPaw.01G069700 Carya illinoinensis HOM05D004276 ORTHO05D005126 4.6e-08 60.5 35 80.0
CDE05G0403 Ceratophyllum demersum HOM05D004276 ORTHO05D005126 4.6e-08 60.5 35 80.0
CDE11G0794 Ceratophyllum demersum HOM05D004276 ORTHO05D005126 4.6e-08 60.5 35 80.0
AUR62004429 Chenopodium quinoa HOM05D004276 ORTHO05D005126 4.6e-08 60.5 35 80.0
AUR62022636 Chenopodium quinoa HOM05D004276 ORTHO05D005126 4.6e-08 60.5 35 80.0
Ca_09481_v3 Cicer arietinum L. HOM05D004276 ORTHO05D005126 4.6e-08 60.5 35 80.0
Ca_25855_v3 Cicer arietinum L. HOM05D004276 ORTHO05D005126 4.6e-08 60.5 35 80.0
Ciclev10022345m.g Citrus clementina HOM05D004276 ORTHO05D005126 4.6e-08 60.5 35 80.0
COL.COLO4_06361 Corchorus olitorius HOM05D004276 ORTHO05D005126 4.6e-08 60.5 35 80.0
DCAR_017055 Daucus carota HOM05D004276 ORTHO05D005126 4.6e-08 60.5 35 80.0
Dinv32536 Davidia involucrata HOM05D004276 ORTHO05D005126 4.6e-08 60.5 35 80.0
Duzib133G1515 Durio zibethinus HOM05D004276 ORTHO05D005126 4.6e-08 60.5 35 80.0
Duzib138G1911 Durio zibethinus HOM05D004276 ORTHO05D005126 4.6e-08 60.5 35 80.0
ECA234G2670 Erigeron canadensis HOM05D004276 ORTHO05D005126 4.6e-08 60.5 35 80.0
FvH4_7g15670 Fragaria vesca HOM05D004276 ORTHO05D005126 4.6e-08 60.5 35 80.0
FAN01G1870 Fragaria x ananassa HOM05D004276 ORTHO05D005126 4.6e-08 60.5 35 80.0
FAN06G0043 Fragaria x ananassa HOM05D004276 ORTHO05D005126 4.6e-08 60.5 35 80.0
FAN06G3034 Fragaria x ananassa HOM05D004276 ORTHO05D005126 4.6e-08 60.5 35 80.0
FAN10G0892 Fragaria x ananassa HOM05D004276 ORTHO05D005126 4.6e-08 60.5 35 80.0
FAN10G4166 Fragaria x ananassa HOM05D004276 ORTHO05D005126 4.6e-08 60.5 35 80.0
Glyma.03G254200 Glycine max HOM05D004276 ORTHO05D005126 4.6e-08 60.5 35 80.0
Glyma.12G191100 Glycine max HOM05D004276 ORTHO05D005126 4.6e-08 60.5 35 80.0
Glyma.13G310600 Glycine max HOM05D004276 ORTHO05D005126 4.6e-08 60.5 35 80.0
Gohir.A11G093300 Gossypium hirsutum HOM05D004276 ORTHO05D005126 4.6e-08 60.5 35 80.0
Gohir.D11G098300 Gossypium hirsutum HOM05D004276 ORTHO05D005126 4.6e-08 60.5 35 80.0
Gorai.007G104500 Gossypium raimondii HOM05D004276 ORTHO05D005126 4.6e-08 60.5 35 80.0
HanXRQChr17g0562231 Helianthus annuus HOM05D004276 ORTHO05D005126 4.6e-08 60.5 35 80.0
Lsat_1_v5_gn_4_34121 Lactuca sativa HOM05D004276 ORTHO05D005126 4.6e-08 60.5 35 80.0
Lj9C594T5 Lonicera japonica HOM05D004276 ORTHO05D005126 4.6e-08 60.5 35 80.0
Lj1g0009566 Lotus japonicus HOM05D004276 ORTHO05D005126 4.6e-08 60.5 35 80.0
Lj3g0009308 Lotus japonicus HOM05D004276 ORTHO05D005126 4.6e-08 60.5 35 80.0
Lalb_Chr04g0261801 Lupinus albus HOM05D004276 ORTHO05D005126 4.6e-08 60.5 35 80.0
MBI06_g29321_MAGBIO Magnolia biondii HOM05D004276 ORTHO05D005126 4.6e-08 60.5 35 80.0
MD01G1073500 Malus domestica HOM05D004276 ORTHO05D005126 4.6e-08 60.5 35 80.0
Nn5g30298 Nelumbo nucifera HOM05D004276 ORTHO05D005126 4.6e-08 60.5 35 80.0
Nitab4.5_0000305g0280 Nicotiana tabacum HOM05D004276 ORTHO05D005126 4.6e-08 60.5 35 80.0
Os06g0158600 Oryza sativa ssp. japonica HOM05D004276 ORTHO05D005126 4.6e-08 60.5 35 80.0
PSO135G0697 Papaver somniferum HOM05D004276 ORTHO05D005126 4.6e-08 60.5 35 80.0
PSO210G0614 Papaver somniferum HOM05D004276 ORTHO05D005126 4.6e-08 60.5 35 80.0
PSO302G0143 Papaver somniferum HOM05D004276 ORTHO05D005126 4.6e-08 60.5 35 80.0
PSO384G3706 Papaver somniferum HOM05D004276 ORTHO05D005126 4.6e-08 60.5 35 80.0
Peaxi162Scf01254g00021 Petunia axillaris HOM05D004276 ORTHO05D005126 4.6e-08 60.5 35 80.0
Phvul.005G117100 Phaseolus vulgaris HOM05D004276 ORTHO05D005126 4.6e-08 60.5 35 80.0
Psat3g005280 Pisum sativum HOM05D004276 ORTHO05D005126 4.6e-08 60.5 35 80.0
Prupe.2G181300 Prunus persica HOM05D004276 ORTHO05D005126 4.6e-08 60.5 35 80.0
Rhsim01G0168500 Rhododendron simsii HOM05D004276 ORTHO05D005126 4.6e-08 60.5 35 80.0
Rhsim11G0144600 Rhododendron simsii HOM05D004276 ORTHO05D005126 4.6e-08 60.5 35 80.0
RcHm_v2.0_Chr1g0358391 Rosa chinensis HOM05D004276 ORTHO05D005126 4.6e-08 60.5 35 80.0
Hund16683 Selenicereus undatus HOM05D004276 ORTHO05D005126 4.6e-08 60.5 35 80.0
SEGI_17768 Sequoiadendron giganteum HOM05D004276 ORTHO05D005126 4.6e-08 60.5 35 80.0
Sc23g0002430 Simmondsia chinensis HOM05D004276 ORTHO05D005126 4.6e-08 60.5 35 80.0
Solyc03g121130.3 Solanum lycopersicum HOM05D004276 ORTHO05D005126 4.6e-08 60.5 35 80.0
Sopen03g039960 Solanum pennellii HOM05D004276 ORTHO05D005126 4.6e-08 60.5 35 80.0
PGSC0003DMG402002606 Solanum tuberosum HOM05D004276 ORTHO05D005126 4.6e-08 60.5 35 80.0
THA.LOC104802050 Tarenaya hassleriana HOM05D004276 ORTHO05D005126 4.6e-08 60.5 35 80.0
Thecc.01G349900 Theobroma cacao HOM05D004276 ORTHO05D005126 4.6e-08 60.5 35 80.0
TWI14G0490 Tripterygium wilfordii HOM05D004276 ORTHO05D005126 4.6e-08 60.5 35 80.0
TWI59G1141 Tripterygium wilfordii HOM05D004276 ORTHO05D005126 4.6e-08 60.5 35 80.0
TAR374G1118 Trochodendron aralioides HOM05D004276 ORTHO05D005126 4.6e-08 60.5 35 80.0
TAR375G0154 Trochodendron aralioides HOM05D004276 ORTHO05D005126 4.6e-08 60.5 35 80.0
unitig_736.g22824 Utricularia gibba HOM05D004276 ORTHO05D005126 4.6e-08 60.5 35 80.0
HPP92_002823 Vanilla planifolia HOM05D004276 ORTHO05D005126 4.6e-08 60.5 35 80.0
HPP92_002881 Vanilla planifolia HOM05D004276 ORTHO05D005126 4.6e-08 60.5 35 80.0
HPP92_002892 Vanilla planifolia HOM05D004276 ORTHO05D005126 4.6e-08 60.5 35 80.0
VMungo1080G0287 Vigna mungo HOM05D004276 ORTHO05D005126 4.6e-08 60.5 35 80.0
GSVIVG01026915001 Vitis vinifera HOM05D004276 ORTHO05D005126 4.6e-08 60.5 35 80.0
GSVIVG01027024001 Vitis vinifera HOM05D004276 ORTHO05D005126 4.6e-08 60.5 35 80.0
Zm00001eb376200 Zea mays HOM05D004276 ORTHO05D005126 4.6e-08 60.5 35 80.0
Zm00001eb376230 Zea mays HOM05D004276 ORTHO05D005126 4.6e-08 60.5 35 80.0
Zm00001eb376270 Zea mays HOM05D004276 ORTHO05D005126 4.6e-08 60.5 35 80.0
Zm00001eb376300 Zea mays HOM05D004276 ORTHO05D005126 4.6e-08 60.5 35 80.0
Zm00001eb376330 Zea mays HOM05D004276 ORTHO05D005126 4.6e-08 60.5 35 80.0
Ah.05g180030 Amaranthus hybridus HOM05D004276 ORTHO05D005126 6.0e-08 60.1 35 80.0
AagrBONN_evm.TU.Sc2ySwM_368.2613 Anthoceros agrestis HOM05D004276 ORTHO05D005126 6.0e-08 60.1 39 71.8
Cc02_g38790 Coffea canephora HOM05D004276 ORTHO05D005126 6.0e-08 60.1 35 77.1
Pp3c11_12810 Physcomitrium patens HOM05D004276 ORTHO05D005126 6.0e-08 60.1 35 80.0
Pp3c7_15560 Physcomitrium patens HOM05D004276 ORTHO05D005126 6.0e-08 60.1 35 80.0
SGA_v2.0_scaffold95G28798 Striga asiatica HOM05D004276 ORTHO05D005126 7.9e-08 59.7 43 74.4
CANSAT78G1628 Cannabis sativa HOM05D004276 ORTHO05D005126 1.0e-07 59.3 35 77.1
ClCG10G016120 Citrullus lanatus HOM05D004276 ORTHO05D005126 1.0e-07 59.3 35 77.1
Haze_15633 Corylus avellana HOM05D004276 ORTHO05D005126 1.0e-07 59.3 33 84.8
MELO3C009766.2 Cucumis melo HOM05D004276 ORTHO05D005126 1.0e-07 59.3 35 77.1
CsaV3_3G040290 Cucumis sativus L. HOM05D004276 ORTHO05D005126 1.0e-07 59.3 35 77.1
Migut.B01814 Erythranthe guttata HOM05D004276 ORTHO05D005126 1.0e-07 59.3 35 77.1
Migut.N01579 Erythranthe guttata HOM05D004276 ORTHO05D005126 1.0e-07 59.3 35 77.1
Thhalv10001643m.g Eutrema salsugineum HOM05D004276 ORTHO05D005126 1.0e-07 59.3 35 77.1
Manes.11G086700 Manihot esculenta HOM05D004276 ORTHO05D005126 1.0e-07 59.3 35 77.1
Potri.002G166200 Populus trichocarpa HOM05D004276 ORTHO05D005126 1.0e-07 59.3 35 77.1
Potri.014G092600 Populus trichocarpa HOM05D004276 ORTHO05D005126 1.0e-07 59.3 35 77.1
SalBow3G3563 Salvia bowleyana HOM05D004276 ORTHO05D005126 1.0e-07 59.3 33 84.8
Sed0018576 Sechium edule HOM05D004276 ORTHO05D005126 1.0e-07 59.3 35 77.1
arahy.Tifrunner.gnm1.ann1.4FI6MM Arachis hypogaea HOM05D004276 ORTHO05D005126 1.3e-07 58.9 35 77.1
arahy.Tifrunner.gnm1.ann1.BP50A3 Arachis hypogaea HOM05D004276 ORTHO05D005126 1.3e-07 58.9 35 77.1
arahy.Tifrunner.gnm1.ann1.K2BJ17 Arachis hypogaea HOM05D004276 ORTHO05D005126 1.3e-07 58.9 35 77.1
arahy.Tifrunner.gnm1.ann1.X3APAR Arachis hypogaea HOM05D004276 ORTHO05D005126 1.3e-07 58.9 35 77.1
CBR_g20329 Chara braunii HOM05D004276 ORTHO05D005126 1.3e-07 58.9 35 77.1
Eucgr.E00082 Eucalyptus grandis HOM05D004276 ORTHO05D005126 1.3e-07 58.9 35 77.1
PGR031G2222 Punica granatum HOM05D004276 ORTHO05D005126 1.3e-07 58.9 35 77.1
ATR0585G106 Amborella trichopoda HOM05D004276 ORTHO05D005126 1.8e-07 58.5 34 79.4
CARHR025440 Cardamine hirsuta HOM05D004276 ORTHO05D005126 1.8e-07 58.5 35 77.1
Gohir.A06G141040 Gossypium hirsutum HOM05D004276 ORTHO05D005126 1.8e-07 58.5 33 84.8
Mapoly0007s0029 Marchantia polymorpha HOM05D004276 ORTHO05D005126 2.3e-07 58.2 35 74.3
Medtr7g116720 Medicago truncatula HOM05D004276 ORTHO05D005126 2.3e-07 58.2 35 77.1
QL04p058903 Quercus lobata HOM05D004276 ORTHO05D005126 2.3e-07 58.2 35 77.1
QL06p021685 Quercus lobata HOM05D004276 ORTHO05D005126 2.3e-07 58.2 35 77.1
Sabra14G0067200 Salix brachista HOM05D004276 ORTHO05D005126 2.3e-07 58.2 33 81.8
TPR.G4704 Trifolium pratense HOM05D004276 ORTHO05D005126 2.3e-07 58.2 35 77.1
MBI07_g03903_MAGBIO Magnolia biondii HOM05D004276 ORTHO05D005126 3.0e-07 57.8 35 74.3
MCO11G412 Micromonas commoda HOM05D004276 ORTHO05D005126 3.0e-07 57.8 35 77.1
SMO117G0002 Selaginella moellendorffii HOM05D004276 ORTHO05D005126 5.1e-07 57.0 35 74.3
Medtr6g086290 Medicago truncatula HOM05D004276 ORTHO05D005126 6.7e-07 56.6 35 74.3
AL4G45500 Arabidopsis lyrata HOM05D004276 ORTHO05D005126 8.7e-07 56.2 35 74.3
AT2G46230 Arabidopsis thaliana HOM05D004276 ORTHO05D005126 8.7e-07 56.2 35 74.3
Carub.0004s2893 Capsella rubella HOM05D004276 ORTHO05D005126 8.7e-07 56.2 35 74.3
BcaC02g07027 Brassica carinata HOM05D004276 ORTHO05D005126 1.5e-06 55.5 35 77.1
BcaC02g12509 Brassica carinata HOM05D004276 ORTHO05D005126 1.5e-06 55.5 35 77.1
A04p34320 Brassica napus HOM05D004276 ORTHO05D005126 1.5e-06 55.5 35 77.1
A05p01570 Brassica napus HOM05D004276 ORTHO05D005126 1.5e-06 55.5 35 77.1
C04p01790 Brassica napus HOM05D004276 ORTHO05D005126 1.5e-06 55.5 35 77.1
C04p72140 Brassica napus HOM05D004276 ORTHO05D005126 1.5e-06 55.5 35 77.1
BraA04t18893Z Brassica rapa HOM05D004276 ORTHO05D005126 1.5e-06 55.5 35 77.1
BraA05t19152Z Brassica rapa HOM05D004276 ORTHO05D005126 1.5e-06 55.5 35 77.1
Sp4g28280 Schrenkiella parvula HOM05D004276 ORTHO05D005126 1.5e-06 55.5 35 77.1
Cre16.g679450 Chlamydomonas reinhardtii HOM05D004276 ORTHO05D005126 2.5e-06 54.7 35 68.6
BcaB06g29435 Brassica carinata HOM05D004276 ORTHO05D005126 3.3e-06 54.3 35 77.1
BcaC02g12702 Brassica carinata HOM05D004276 ORTHO05D005126 3.3e-06 54.3 35 77.1
SalBow1G3478 Salvia bowleyana HOM05D004276 ORTHO05D005126 3.3e-06 54.3 31 77.4
RcHm_v2.0_Chr4g0446551 Rosa chinensis HOM05D004276 ORTHO05D005126 9.6e-06 52.8 33 78.8


User provided reference genes

Program Settings