Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0457591 Rosa chinensis HOM05D006608 ORTHO05D008316 4.4e-164 581.3 301 100.0
FAN14G1365 Fragaria x ananassa HOM05D006608 ORTHO05D008316 4.0e-149 531.6 302 92.7
FAN05G5720 Fragaria x ananassa HOM05D006608 ORTHO05D008316 3.4e-148 528.5 304 92.1
FAN02G2060 Fragaria x ananassa HOM05D006608 ORTHO05D008316 4.4e-148 528.1 312 89.7
FAN09G0299 Fragaria x ananassa HOM05D002543 ORTHO05D002990 5.4e-146 521.2 309 89.3
Prupe.6G309700 Prunus persica HOM05D006608 ORTHO05D008316 6.9e-125 451.1 332 73.5
MD12G1203800 Malus domestica HOM05D006608 ORTHO05D008316 9.7e-119 430.6 310 74.5
MD04G1191200 Malus domestica HOM05D006608 ORTHO05D008316 1.5e-116 423.3 316 72.2
FvH4_6g07900 Fragaria vesca HOM05D006608 ORTHO05D008316 4.1e-109 398.7 208 97.6
Lj2g0018741 Lotus japonicus HOM05D006608 ORTHO05D008316 9.4e-106 387.5 328 64.3
Eucgr.H01287 Eucalyptus grandis HOM05D006608 ORTHO05D008316 6.1e-105 384.8 331 62.8
CANSAT54G1874 Cannabis sativa HOM05D006608 ORTHO05D008316 7.9e-105 384.4 303 66.3
Ciclev10002108m.g Citrus clementina HOM05D006608 ORTHO05D008316 3.3e-103 379.0 302 66.9
Thecc.05G325800 Theobroma cacao HOM05D006608 ORTHO05D008316 3.2e-98 362.5 245 74.3
HanXRQChr09g0247441 Helianthus annuus HOM05D006608 ORTHO05D008316 3.6e-97 359.0 222 79.3
Potri.005G010700 Populus trichocarpa HOM05D006608 ORTHO05D008316 3.6e-97 359.0 223 78.5
ECA240G1520 Erigeron canadensis HOM05D006608 ORTHO05D008316 4.7e-97 358.6 226 79.6
CSS0011542 Camellia sinensis var. sinensis HOM05D006608 ORTHO05D008316 1.4e-96 357.1 219 80.4
Potri.013G006500 Populus trichocarpa HOM05D006608 ORTHO05D008316 2.3e-96 356.3 219 79.5
Duzib177G0608 Durio zibethinus HOM05D006608 ORTHO05D008316 8.8e-96 354.4 245 73.9
Manes.08G109600 Manihot esculenta HOM05D006608 ORTHO05D008316 8.8e-96 354.4 219 77.2
Sabra05G0007800 Salix brachista HOM05D006608 ORTHO05D008316 2.6e-95 352.8 219 78.1
QL03p016892 Quercus lobata HOM05D006608 ORTHO05D008316 3.3e-95 352.4 216 79.2
COL.COLO4_05523 Corchorus olitorius HOM05D006608 ORTHO05D008316 5.7e-95 351.7 218 79.4
Sabra05G0019000 Salix brachista HOM05D006608 ORTHO05D008316 5.7e-95 351.7 219 77.6
Cfa006713 Carpinus fangiana HOM05D006608 ORTHO05D008316 1.7e-94 350.1 216 79.2
Haze_04048 Corylus avellana HOM05D006608 ORTHO05D008316 1.7e-94 350.1 218 78.0
PGR031G0497 Punica granatum HOM05D006608 ORTHO05D008316 1.7e-94 350.1 220 78.2
SGA_v2.0_scaffold4G01979 Striga asiatica HOM05D006608 ORTHO05D008316 3.7e-94 349.0 243 73.7
vmacro01585 Vaccinium macrocarpon HOM05D006608 ORTHO05D008316 4.8e-94 348.6 234 73.9
CiPaw.08G154200 Carya illinoinensis HOM05D006608 ORTHO05D008316 1.8e-93 346.7 219 77.2
arahy.Tifrunner.gnm1.ann1.0RV1NN Arachis hypogaea HOM05D006608 ORTHO05D008316 2.4e-93 346.3 283 65.0
TWI12G0784 Tripterygium wilfordii HOM05D006608 ORTHO05D008316 4.1e-93 345.5 250 71.2
Sabra13G0005500 Salix brachista HOM05D006608 ORTHO05D008316 5.3e-93 345.1 271 66.8
arahy.Tifrunner.gnm1.ann1.FYW6BY Arachis hypogaea HOM05D006608 ORTHO05D008316 9.1e-93 344.4 303 62.0
Gorai.013G208300 Gossypium raimondii HOM05D006608 ORTHO05D008316 9.1e-93 344.4 217 78.8
Peaxi162Scf00299g00341 Petunia axillaris HOM05D006608 ORTHO05D008316 2.0e-92 343.2 264 68.9
Gohir.A13G176500 Gossypium hirsutum HOM05D006608 ORTHO05D008316 4.5e-92 342.0 216 78.7
Sed0000881 Sechium edule HOM05D006608 ORTHO05D008316 3.8e-91 339.0 222 76.1
THA.LOC104820562 Tarenaya hassleriana HOM05D006608 ORTHO05D008316 3.8e-91 339.0 217 77.0
Actinidia35508 Actinidia chinensis HOM05D006608 ORTHO05D008316 5.0e-91 338.6 255 68.2
VMungo1383G0735 Vigna mungo HOM05D006608 ORTHO05D008316 6.5e-91 338.2 399 50.9
Lsat_1_v5_gn_7_65241 Lactuca sativa HOM05D006608 ORTHO05D008316 8.5e-91 337.8 230 75.7
DCAR_002111 Daucus carota HOM05D006608 ORTHO05D008316 2.5e-90 336.3 221 73.8
MSTRG.16414 Avicennia marina HOM05D006608 ORTHO05D008316 3.2e-90 335.9 220 75.5
ClCG01G010870 Citrullus lanatus HOM05D006608 ORTHO05D008316 4.2e-90 335.5 257 66.9
Phvul.001G224100 Phaseolus vulgaris HOM05D006608 ORTHO05D008316 9.4e-90 334.3 222 74.8
CsaV3_1G015710 Cucumis sativus L. HOM05D006608 ORTHO05D008316 1.2e-89 334.0 222 75.2
arahy.Tifrunner.gnm1.ann1.7ZK9KC Arachis hypogaea HOM05D006608 ORTHO05D008316 1.6e-89 333.6 221 73.8
Ca_09291_v3 Cicer arietinum L. HOM05D006608 ORTHO05D008316 1.6e-89 333.6 219 76.7
Cc02_g35130 Coffea canephora HOM05D006608 ORTHO05D008316 1.6e-89 333.6 221 74.2
Migut.B00927 Erythranthe guttata HOM05D006608 ORTHO05D008316 2.1e-89 333.2 220 74.5
Lalb_Chr04g0260371 Lupinus albus HOM05D006608 ORTHO05D008316 2.7e-89 332.8 222 73.4
PSO210G3601 Papaver somniferum HOM05D006608 ORTHO05D008316 2.7e-89 332.8 211 74.9
Rhsim11G0098400 Rhododendron simsii HOM05D006608 ORTHO05D008316 2.7e-89 332.8 255 67.5
GSVIVG01031268001 Vitis vinifera HOM05D006608 ORTHO05D008316 2.7e-89 332.8 219 74.4
TAR362G0553 Trochodendron aralioides HOM05D006608 ORTHO05D008316 3.6e-89 332.4 212 75.0
SalBow5G2350 Salvia bowleyana HOM05D006608 ORTHO05D008316 4.7e-89 332.0 226 72.1
arahy.Tifrunner.gnm1.ann1.V41D0B Arachis hypogaea HOM05D006608 ORTHO05D008316 6.1e-89 331.6 221 72.9
Solyc01g106090.3 Solanum lycopersicum HOM05D006608 ORTHO05D008316 8.0e-89 331.3 218 75.7
Dinv30914 Davidia involucrata HOM05D006608 ORTHO05D008316 1.0e-88 330.9 207 77.3
Ah.04g158480 Amaranthus hybridus HOM05D006608 ORTHO05D008316 1.4e-88 330.5 219 74.4
Glyma.03G230300 Glycine max HOM05D006608 ORTHO05D008316 1.4e-88 330.5 218 74.8
AUR62006773 Chenopodium quinoa HOM05D006608 ORTHO05D008316 1.8e-88 330.1 219 74.4
PSO761G0023 Papaver somniferum HOM05D006608 ORTHO05D008316 1.8e-88 330.1 211 74.4
Aqoxy2G02631 Aquilegia oxysepala HOM05D006608 ORTHO05D008316 2.3e-88 329.7 251 66.9
Nitab4.5_0005908g0020 Nicotiana tabacum HOM05D006608 ORTHO05D008316 2.3e-88 329.7 278 64.0
Sopen01g048480 Solanum pennellii HOM05D006608 ORTHO05D008316 2.3e-88 329.7 218 75.2
PGSC0003DMG400010682 Solanum tuberosum HOM05D006608 ORTHO05D008316 2.3e-88 329.7 218 75.2
CAN.G504.78 Capsicum annuum HOM05D006608 ORTHO05D008316 3.0e-88 329.3 218 75.7
Lj9A306T68 Lonicera japonica HOM05D006608 ORTHO05D008316 5.2e-88 328.6 205 76.6
MBI18_g27388_MAGBIO Magnolia biondii HOM05D006608 ORTHO05D008316 5.2e-88 328.6 211 73.9
Nitab4.5_0002750g0060 Nicotiana tabacum HOM05D006608 ORTHO05D008316 5.2e-88 328.6 215 74.9
Hund21858 Selenicereus undatus HOM05D006608 ORTHO05D008316 6.7e-88 328.2 222 73.0
EL10Ac4g09502 Beta vulgaris HOM05D006608 ORTHO05D008316 3.7e-86 322.4 219 72.6
MELO3C026109.2 Cucumis melo HOM05D006608 ORTHO05D008316 4.8e-86 322.0 208 76.9
C01p27450 Brassica napus HOM05D006608 ORTHO05D008316 1.8e-85 320.1 260 64.6
Cpa.g.sc48.186 Carica papaya HOM05D006608 ORTHO05D008316 1.8e-85 320.1 222 74.3
CDE01G0267 Ceratophyllum demersum HOM05D006608 ORTHO05D008316 3.1e-85 319.3 211 71.1
BolC8t48283H Brassica oleracea HOM05D006608 ORTHO05D008316 7.0e-85 318.2 292 61.0
Psat3g014240 Pisum sativum HOM05D006608 ORTHO05D008316 1.6e-84 317.0 242 66.9
A08p11770 Brassica napus HOM05D006608 ORTHO05D008316 2.0e-84 316.6 214 74.8
BraA08t33169Z Brassica rapa HOM05D006608 ORTHO05D008316 2.0e-84 316.6 214 74.8
TPR.G1650 Trifolium pratense HOM05D006608 ORTHO05D008316 2.0e-84 316.6 213 74.2
Gohir.D13G182950 Gossypium hirsutum HOM05D006608 ORTHO05D008316 3.5e-84 315.8 246 67.5
Medtr7g111880 Medicago truncatula HOM05D006608 ORTHO05D008316 3.5e-84 315.8 214 73.8
Sp7g13760 Schrenkiella parvula HOM05D006608 ORTHO05D008316 4.5e-84 315.5 214 74.8
Thhalv10025982m.g Eutrema salsugineum HOM05D006608 ORTHO05D008316 2.2e-83 313.2 214 73.4
Carub.0007s2637 Capsella rubella HOM05D006608 ORTHO05D008316 2.9e-83 312.8 215 73.5
AT4G15510 Arabidopsis thaliana HOM05D006608 ORTHO05D008316 3.8e-83 312.4 205 75.6
BcaC09g50245 Brassica carinata HOM05D006608 ORTHO05D008316 5.0e-83 312.0 211 73.9
AL7G40010 Arabidopsis lyrata HOM05D006608 ORTHO05D008316 8.5e-83 311.2 214 73.8
CDE12G0684 Ceratophyllum demersum HOM05D006608 ORTHO05D008316 8.5e-83 311.2 207 70.5
BolC1t02685H Brassica oleracea HOM05D006608 ORTHO05D008316 1.1e-82 310.8 211 73.5
A01p22060 Brassica napus HOM05D006608 ORTHO05D008316 1.5e-82 310.5 270 60.7
BcaC07g37888 Brassica carinata HOM05D006608 ORTHO05D008316 7.2e-82 308.1 294 59.2
BcaNung00268 Brassica carinata HOM05D006608 ORTHO05D008316 1.2e-81 307.4 211 73.9
CARHR222300 Cardamine hirsuta HOM05D006608 ORTHO05D008316 8.0e-81 304.7 214 72.0
unitig_0.g2226 Utricularia gibba HOM05D006608 ORTHO05D008316 8.0e-81 304.7 221 68.3
Aa31LG2G11410 Aethionema arabicum HOM05D006608 ORTHO05D008316 1.0e-80 304.3 214 70.6
ATR0706G264 Amborella trichopoda HOM05D006608 ORTHO05D008316 1.4e-80 303.9 188 76.6
Os07g0275100 Oryza sativa ssp. japonica HOM05D006608 ORTHO05D008316 1.2e-79 300.8 219 68.5
Zm00001eb028550 Zea mays HOM05D006608 ORTHO05D008316 2.0e-79 300.1 213 70.9
BcaB04g18298 Brassica carinata HOM05D006608 ORTHO05D008316 1.3e-78 297.4 190 75.8
Nn4g25453 Nelumbo nucifera HOM05D006608 ORTHO05D008316 1.7e-78 297.0 214 68.2
BcaC09g50241 Brassica carinata HOM05D006608 ORTHO05D008316 5.5e-74 282.0 191 73.3
SEGI_38534 Sequoiadendron giganteum HOM05D006608 ORTHO05D008316 1.6e-73 280.4 215 62.8
Mapoly0002s0119 Marchantia polymorpha HOM05D006608 ORTHO05D008316 7.8e-68 261.5 189 64.6
Oeu019844.1 Olea europaea HOM05D006608 ORTHO05D008316 2.9e-67 259.6 206 65.5
Pp3c25_7030 Physcomitrium patens HOM05D006608 ORTHO05D008316 1.6e-65 253.8 181 67.4
SMO203G0012 Selaginella moellendorffii HOM05D006608 ORTHO05D008316 4.3e-58 229.2 174 61.5
CBR_g54968 Chara braunii HOM05D006608 ORTHO05D008316 1.3e-54 217.6 180 56.7
Sc09g0002570 Simmondsia chinensis HOM05D006608 ORTHO05D008316 5.1e-51 205.7 135 72.6
Os12g0564400 Oryza sativa ssp. japonica HOM05D006608 ORTHO05D008316 2.4e-45 186.8 149 61.7
Cre08.g362900 Chlamydomonas reinhardtii HOM05D006608 ORTHO05D008316 1.2e-44 184.5 219 47.0
AUR62000427 Chenopodium quinoa HOM05D006608 ORTHO05D008316 1.7e-43 180.6 114 77.2
MCO08G333 Micromonas commoda HOM05D006608 ORTHO05D008316 9.2e-37 158.3 188 43.6
PRCOL_00003409 Prasinoderma coloniale HOM05D006608 ORTHO05D008316 1.3e-22 111.3 188 35.6
Glyma.19G227402 Glycine max HOM05D006608 ORTHO05D008316 1.9e-21 107.5 78 65.4
Os07g0275901 Oryza sativa ssp. japonica HOM05D006608 ORTHO05D008316 1.9e-18 97.4 75 65.3
Os07g0275801 Oryza sativa ssp. japonica HOM05D006608 ORTHO05D008316 4.0e-16 89.7 60 66.7
HPP92_017019 Vanilla planifolia HOM05D002543 ORTHO05D002990 2.7e-12 77.0 158 34.2
TAR633G0622 Trochodendron aralioides HOM05D006608 ORTHO05D008316 1.3e-09 68.2 52 61.5
AL1G19830 Arabidopsis lyrata HOM05D002543 ORTHO05D002990 2.4e-08 63.9 112 42.0
THA.LOC104820540 Tarenaya hassleriana HOM05D002543 ORTHO05D002990 2.4e-08 63.9 112 41.1
CSS0021124 Camellia sinensis var. sinensis HOM05D002543 ORTHO05D002990 3.1e-08 63.5 129 39.5
Cfa006711 Carpinus fangiana HOM05D002543 ORTHO05D002990 3.1e-08 63.5 112 42.0
THA.LOC104816855 Tarenaya hassleriana HOM05D002543 ORTHO05D002990 5.3e-08 62.8 112 40.2
Haze_04051 Corylus avellana HOM05D002543 ORTHO05D002990 6.9e-08 62.4 112 42.0
CANSAT54G0111 Cannabis sativa HOM05D002543 ORTHO05D002990 9.0e-08 62.0 112 38.4
Aa31LG1G5780 Aethionema arabicum HOM05D002543 ORTHO05D002990 1.2e-07 61.6 112 41.1
AT1G09340 Arabidopsis thaliana HOM05D002543 ORTHO05D002990 1.2e-07 61.6 112 41.1
Carub.0001s0868 Capsella rubella HOM05D002543 ORTHO05D002990 1.2e-07 61.6 112 41.1
QL03p017109 Quercus lobata HOM05D002543 ORTHO05D002990 1.5e-07 61.2 112 41.1
QL03p017392 Quercus lobata HOM05D002543 ORTHO05D002990 1.5e-07 61.2 112 41.1
Hma1.2p1_0008F-1.1_g005360 Hydrangea macrophylla HOM05D002543 ORTHO05D002990 2.0e-07 60.8 112 40.2
Hma1.2p1_1808F.1_g303465 Hydrangea macrophylla HOM05D002543 ORTHO05D002990 2.0e-07 60.8 112 40.2
Atru.chr2.231 Acer truncatum HOM05D002543 ORTHO05D002990 4.5e-07 59.7 112 42.0
DCAR_005274 Daucus carota HOM05D002543 ORTHO05D002990 1.0e-06 58.5 67 58.2
Dinv30917 Davidia involucrata HOM05D002543 ORTHO05D002990 1.0e-06 58.5 67 55.2
BcaC07g41887 Brassica carinata HOM05D002543 ORTHO05D002990 1.3e-06 58.2 112 40.2
CANSAT56G4077 Cannabis sativa HOM05D002933 ORTHO05D009221 1.7e-06 57.8 224 24.6
Thhalv10007937m.g Eutrema salsugineum HOM05D002543 ORTHO05D002990 1.7e-06 57.8 112 40.2
Sp1g07950 Schrenkiella parvula HOM05D002543 ORTHO05D002990 1.7e-06 57.8 112 39.3
BcaB07g34128 Brassica carinata HOM05D002543 ORTHO05D002990 2.2e-06 57.4 112 40.2
BraA06t23817Z Brassica rapa HOM05D002543 ORTHO05D002990 2.2e-06 57.4 112 40.2
CARHR009310 Cardamine hirsuta HOM05D002543 ORTHO05D002990 2.2e-06 57.4 112 39.3
SEGI_20505 Sequoiadendron giganteum HOM05D002933 ORTHO05D009221 2.2e-06 57.4 174 27.6
GSVIVG01016616001 Vitis vinifera HOM05D002933 ORTHO05D009221 2.2e-06 57.4 175 24.0
GSVIVG01031272001 Vitis vinifera HOM05D002543 ORTHO05D002990 2.2e-06 57.4 112 41.1
BcaC05g24788 Brassica carinata HOM05D002543 ORTHO05D002990 2.9e-06 57.0 112 39.3
C05p07330 Brassica napus HOM05D002543 ORTHO05D002990 2.9e-06 57.0 112 39.3
BolC5t29491H Brassica oleracea HOM05D002543 ORTHO05D002990 2.9e-06 57.0 112 39.3
Ciclev10032629m.g Citrus clementina HOM05D002933 ORTHO05D009221 3.8e-06 56.6 263 22.1
SEGI_36156 Sequoiadendron giganteum HOM05D002933 ORTHO05D007742 3.8e-06 56.6 262 24.8
TAR362G1343 Trochodendron aralioides HOM05D002543 ORTHO05D002990 3.8e-06 56.6 112 40.2
A06p06060 Brassica napus HOM05D002543 ORTHO05D002990 4.9e-06 56.2 112 39.3
CiPaw.07G031800 Carya illinoinensis HOM05D002543 ORTHO05D002990 6.5e-06 55.8 112 38.4
Lj1g0015240 Lotus japonicus HOM05D002543 ORTHO05D002990 6.5e-06 55.8 122 37.7
Prupe.6G309500 Prunus persica HOM05D002543 ORTHO05D002990 6.5e-06 55.8 114 40.4
PGR031G1645 Punica granatum HOM05D002543 ORTHO05D002990 6.5e-06 55.8 113 39.8
Rhsim03G0127300 Rhododendron simsii HOM05D002933 ORTHO05D009221 6.5e-06 55.8 187 25.7
TPR.G13990 Trifolium pratense HOM05D002933 ORTHO05D009221 6.5e-06 55.8 175 24.6
Eucgr.L03253 Eucalyptus grandis HOM05D002933 ORTHO05D009221 8.4e-06 55.5 210 24.8


User provided reference genes

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