Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0457571 Rosa chinensis HOM05D003743 ORTHO05D004311 0.0e+00 1227.2 650 100.0
FAN14G1138 Fragaria x ananassa HOM05D003743 ORTHO05D004311 0.0e+00 1100.1 650 89.8
FvH4_6g07870 Fragaria vesca HOM05D003743 ORTHO05D004311 0.0e+00 1099.3 650 89.8
FAN09G3903 Fragaria x ananassa HOM05D003743 ORTHO05D004311 0.0e+00 1095.9 650 89.7
FAN05G4405 Fragaria x ananassa HOM05D003743 ORTHO05D004311 0.0e+00 1090.9 650 89.5
FAN02G2028 Fragaria x ananassa HOM05D003743 ORTHO05D004311 6.2e-296 1020.4 650 84.8
Prupe.6G309900 Prunus persica HOM05D003743 ORTHO05D004311 4.6e-243 844.7 652 73.0
MD04G1191400 Malus domestica HOM05D003743 ORTHO05D004311 3.9e-226 788.5 648 69.3
Manes.16G024900 Manihot esculenta HOM05D003743 ORTHO05D004311 9.4e-212 740.7 663 62.7
Prupe.3G050300 Prunus persica HOM05D003743 ORTHO05D004311 1.2e-211 740.3 660 63.8
Duzib160G0164 Durio zibethinus HOM05D003743 ORTHO05D004311 1.6e-211 740.0 664 63.0
Thecc.06G191600 Theobroma cacao HOM05D003743 ORTHO05D004311 3.6e-211 738.8 667 62.7
CsaV3_4G005020 Cucumis sativus L. HOM05D003743 ORTHO05D004311 3.3e-209 732.3 664 63.4
Glyma.07G194200 Glycine max HOM05D003743 ORTHO05D004311 2.8e-208 729.2 663 63.5
MD10G1061800 Malus domestica HOM05D003743 ORTHO05D004311 6.3e-208 728.0 661 64.0
TWI23G0181 Tripterygium wilfordii HOM05D003743 ORTHO05D004311 6.3e-208 728.0 665 61.5
Gohir.D10G024500 Gossypium hirsutum HOM05D003743 ORTHO05D004311 7.0e-207 724.5 664 62.0
Haze_06507 Corylus avellana HOM05D003743 ORTHO05D004311 1.2e-206 723.8 665 63.8
Gohir.A10G023800 Gossypium hirsutum HOM05D003743 ORTHO05D004311 5.9e-206 721.5 664 61.7
Dinv07531 Davidia involucrata HOM05D003743 ORTHO05D004311 1.0e-205 720.7 661 62.6
Glyma.13G182500 Glycine max HOM05D003743 ORTHO05D004311 6.5e-205 718.0 663 62.7
Gorai.011G025800 Gossypium raimondii HOM05D003743 ORTHO05D004311 1.5e-204 716.8 664 61.9
RcHm_v2.0_Chr5g0007801 Rosa chinensis HOM05D003743 ORTHO05D004311 2.5e-204 716.1 662 62.7
CiPaw.10G046600 Carya illinoinensis HOM05D003743 ORTHO05D004311 2.7e-203 712.6 663 62.1
FAN14G3620 Fragaria x ananassa HOM05D003743 ORTHO05D004311 3.0e-202 709.1 661 61.7
Cpa.g.sc27.76 Carica papaya HOM05D003743 ORTHO05D004311 4.0e-202 708.8 667 61.3
Duzib235G1026 Durio zibethinus HOM05D003743 ORTHO05D004311 4.0e-202 708.8 667 61.8
MELO3C017564.2 Cucumis melo HOM05D003743 ORTHO05D004311 6.8e-202 708.0 664 62.5
FvH4_3g04783 Fragaria vesca HOM05D003743 ORTHO05D004311 2.0e-201 706.4 661 61.6
Potri.004G039500 Populus trichocarpa HOM05D003743 ORTHO05D004311 2.0e-201 706.4 665 60.3
COL.COLO4_31510 Corchorus olitorius HOM05D003743 ORTHO05D004311 2.6e-201 706.1 667 61.0
FAN16G2290 Fragaria x ananassa HOM05D003743 ORTHO05D004311 4.4e-201 705.3 661 61.4
QL03p016879 Quercus lobata HOM05D003743 ORTHO05D004311 7.5e-201 704.5 662 62.4
FAN21G0113 Fragaria x ananassa HOM05D003743 ORTHO05D004311 1.3e-200 703.7 661 61.1
Sed0012938 Sechium edule HOM05D003743 ORTHO05D004311 8.3e-200 701.0 664 61.9
VMungo0251G3484 Vigna mungo HOM05D003743 ORTHO05D004311 1.1e-199 700.7 664 61.1
Phvul.002G226300 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 2.4e-199 699.5 665 61.4
Psat7g112160 Pisum sativum HOM05D003743 ORTHO05D004311 5.9e-198 694.9 667 60.4
Potri.011G047900 Populus trichocarpa HOM05D003743 ORTHO05D004311 7.7e-198 694.5 665 58.9
Hma1.2p1_0126F.1_g059170 Hydrangea macrophylla HOM05D003743 ORTHO05D004311 1.0e-197 694.1 663 61.1
FAN03G0627 Fragaria x ananassa HOM05D003743 ORTHO05D004311 1.5e-196 690.3 661 60.8
TAR627G0572 Trochodendron aralioides HOM05D003743 ORTHO05D004311 1.2e-195 687.2 670 60.3
PGR042G1300 Punica granatum HOM05D003743 ORTHO05D004311 8.0e-195 684.5 671 59.2
THA.LOC104819165 Tarenaya hassleriana HOM05D003743 ORTHO05D004311 1.4e-194 683.7 661 59.8
Eucgr.E03353 Eucalyptus grandis HOM05D003743 ORTHO05D004311 8.9e-194 681.0 666 60.4
CSS0028072 Camellia sinensis var. sinensis HOM05D003743 ORTHO05D004311 2.6e-193 679.5 640 60.8
Sabra04G0024300 Salix brachista HOM05D003743 ORTHO05D004311 3.4e-193 679.1 665 58.8
Medtr4g089070 Medicago truncatula HOM05D003743 ORTHO05D004311 4.4e-193 678.7 667 59.5
Ca_25733_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 5.7e-193 678.3 665 60.3
Sabra11G0033300 Salix brachista HOM05D003743 ORTHO05D004311 5.7e-193 678.3 665 58.9
QL05p039342 Quercus lobata HOM05D003743 ORTHO05D004311 9.2e-191 671.0 663 60.2
QL10p057179 Quercus lobata HOM05D003743 ORTHO05D004311 9.2e-191 671.0 663 60.2
Thhalv10023338m.g Eutrema salsugineum HOM05D003743 ORTHO05D004311 5.0e-189 665.2 660 58.3
Lj4g0023106 Lotus japonicus HOM05D003743 ORTHO05D004311 6.6e-189 664.8 667 58.9
arahy.Tifrunner.gnm1.ann1.I4CLDN Arachis hypogaea HOM05D003743 ORTHO05D004311 8.6e-189 664.5 664 58.9
Lalb_Chr05g0218341 Lupinus albus HOM05D003743 ORTHO05D004311 1.5e-188 663.7 664 59.8
Aa31LG2G9550 Aethionema arabicum HOM05D003743 ORTHO05D004311 4.0e-186 655.6 659 58.3
Carub.0002s0416 Capsella rubella HOM05D003743 ORTHO05D004311 5.2e-186 655.2 658 57.9
TPR.G12063 Trifolium pratense HOM05D003743 ORTHO05D004311 6.8e-186 654.8 667 58.5
Aqoxy1G03805 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 2.6e-185 652.9 662 57.9
Ciclev10028000m.g Citrus clementina HOM05D003743 ORTHO05D004311 4.9e-184 648.7 666 59.2
TAR629G2996 Trochodendron aralioides HOM05D003743 ORTHO05D004311 4.9e-184 648.7 667 58.3
BcaC06g31829 Brassica carinata HOM05D003743 ORTHO05D004311 1.6e-182 643.7 660 57.3
CANSAT35G0257 Cannabis sativa HOM05D003743 ORTHO05D004311 2.0e-182 643.3 681 57.7
AL2G15400 Arabidopsis lyrata HOM05D003743 ORTHO05D004311 6.0e-182 641.7 658 57.4
Sp2g03480 Schrenkiella parvula HOM05D003743 ORTHO05D004311 6.0e-182 641.7 662 57.1
AT1G61040 Arabidopsis thaliana HOM05D003743 ORTHO05D004311 1.1e-180 637.5 658 57.0
Glyma.03G168800 Glycine max HOM05D003743 ORTHO05D004311 2.8e-179 632.9 667 57.6
CSS0027200 Camellia sinensis var. sinensis HOM05D003743 ORTHO05D004311 3.6e-179 632.5 659 57.4
CARHR052180 Cardamine hirsuta HOM05D003743 ORTHO05D004311 1.4e-178 630.6 656 56.9
Lsat_1_v5_gn_2_40361 Lactuca sativa HOM05D003743 ORTHO05D004311 1.4e-178 630.6 667 56.5
Oeu050830.1 Olea europaea HOM05D003743 ORTHO05D004311 4.4e-177 625.5 661 56.3
Atru.chr7.2377 Acer truncatum HOM05D003743 ORTHO05D004311 5.8e-177 625.2 662 57.4
RhsimUnG0044100 Rhododendron simsii HOM05D003743 ORTHO05D004311 1.3e-176 624.0 675 56.7
C01p37700 Brassica napus HOM05D003743 ORTHO05D004311 2.9e-176 622.9 658 56.8
Nitab4.5_0003668g0110 Nicotiana tabacum HOM05D003743 ORTHO05D004311 2.9e-176 622.9 661 56.9
Rhsim07G0025200 Rhododendron simsii HOM05D003743 ORTHO05D004311 2.9e-176 622.9 675 56.4
BcaC02g10594 Brassica carinata HOM05D003743 ORTHO05D004311 1.1e-175 620.9 659 56.4
C04p25600 Brassica napus HOM05D003743 ORTHO05D004311 1.1e-175 620.9 659 56.4
PSO210G5871 Papaver somniferum HOM05D003743 ORTHO05D004311 1.1e-175 620.9 661 56.3
PSO170G2796 Papaver somniferum HOM05D003743 ORTHO05D004311 2.4e-175 619.8 660 55.9
CANSAT54G1490 Cannabis sativa HOM05D003743 ORTHO05D004311 7.0e-175 618.2 658 58.7
BcaC09g49339 Brassica carinata HOM05D003743 ORTHO05D004311 2.1e-174 616.7 654 56.7
Nn1g07800 Nelumbo nucifera HOM05D003743 ORTHO05D004311 1.0e-173 614.4 671 55.7
SGA_v2.0_scaffold100G29640 Striga asiatica HOM05D003743 ORTHO05D004311 1.3e-173 614.0 657 54.9
Cc02_g12930 Coffea canephora HOM05D003743 ORTHO05D004311 5.1e-173 612.1 656 54.3
Glyma.19G170200 Glycine max HOM05D003743 ORTHO05D004311 8.6e-173 611.3 665 56.7
Phvul.001G167200 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 1.5e-172 610.5 666 56.6
Ah.04g152550 Amaranthus hybridus HOM05D003743 ORTHO05D004311 9.5e-172 607.8 665 54.6
Peaxi162Scf00379g00092 Petunia axillaris HOM05D003743 ORTHO05D004311 1.6e-171 607.1 659 56.1
HPP92_024423 Vanilla planifolia HOM05D003743 ORTHO05D004311 1.6e-171 607.1 663 54.0
Migut.M01180 Erythranthe guttata HOM05D003743 ORTHO05D004311 3.6e-171 605.9 661 55.4
PGSC0003DMG400022434 Solanum tuberosum HOM05D003743 ORTHO05D004311 4.0e-170 602.4 661 55.2
Sopen02g023440 Solanum pennellii HOM05D003743 ORTHO05D004311 5.2e-170 602.1 659 55.4
Nitab4.5_0003347g0010 Nicotiana tabacum HOM05D003743 ORTHO05D004311 6.8e-170 601.7 659 55.2
Sc05g0007850 Simmondsia chinensis HOM05D003743 ORTHO05D004311 6.8e-170 601.7 660 55.0
Solyc02g078580.1 Solanum lycopersicum HOM05D003743 ORTHO05D004311 6.8e-170 601.7 659 55.2
MBI04_g36401_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 8.9e-170 601.3 667 55.9
DCAR_004097 Daucus carota HOM05D003743 ORTHO05D004311 1.2e-169 600.9 663 55.4
FAN25G1603 Fragaria x ananassa HOM05D003743 ORTHO05D004311 1.2e-169 600.9 617 57.9
HanXRQChr10g0285841 Helianthus annuus HOM05D003743 ORTHO05D004311 2.0e-169 600.1 622 57.9
CAN.G1627.16 Capsicum annuum HOM05D003743 ORTHO05D004311 1.3e-168 597.4 670 55.4
Lj1g0019037 Lotus japonicus HOM05D003743 ORTHO05D004311 2.9e-168 596.3 662 56.3
A01p29850 Brassica napus HOM05D003743 ORTHO05D004311 3.7e-168 595.9 657 54.9
Ah.09g235750 Amaranthus hybridus HOM05D003743 ORTHO05D004311 8.3e-168 594.7 665 54.1
DCAR_008049 Daucus carota HOM05D003743 ORTHO05D004311 4.1e-167 592.4 659 55.2
SHI01836 Sapria himalayana HOM05D003743 ORTHO05D004311 1.0e-165 587.8 667 53.2
VMungo1383G2741 Vigna mungo HOM05D003743 ORTHO05D004311 1.0e-165 587.8 673 53.3
BcaB04g20309 Brassica carinata HOM05D003743 ORTHO05D004311 3.0e-165 586.3 670 53.6
Lj8P171T25 Lonicera japonica HOM05D003743 ORTHO05D004311 8.6e-165 584.7 544 61.0
ATR0763G146 Amborella trichopoda HOM05D003743 ORTHO05D004311 5.6e-164 582.0 664 54.2
CDE02G2043 Ceratophyllum demersum HOM05D003743 ORTHO05D004311 5.6e-164 582.0 660 54.8
BraA01t03113Z Brassica rapa HOM05D003743 ORTHO05D004311 1.2e-163 580.9 655 53.7
Lalb_Chr04g0260391 Lupinus albus HOM05D003743 ORTHO05D004311 1.6e-163 580.5 673 53.2
unitig_748.g8020 Utricularia gibba HOM05D003743 ORTHO05D004311 8.1e-163 578.2 663 52.9
VMungo1383G3375 Vigna mungo HOM05D003743 ORTHO05D004311 5.2e-162 575.5 656 54.3
Lalb_Chr16g0383591 Lupinus albus HOM05D003743 ORTHO05D004311 8.9e-162 574.7 658 53.2
Phvul.001G224300 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 2.0e-161 573.5 675 53.0
EL10Ac8g20336 Beta vulgaris HOM05D003743 ORTHO05D004311 3.4e-161 572.8 663 52.6
SalBow8G3648 Salvia bowleyana HOM05D003743 ORTHO05D004311 3.8e-160 569.3 657 52.7
MBI16_g34925_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 6.4e-160 568.5 662 55.1
Ca_08759_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 1.9e-159 567.0 548 58.9
Ca_30219_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 1.9e-159 567.0 548 58.9
Psat3g052160 Pisum sativum HOM05D003743 ORTHO05D004311 4.2e-159 565.8 655 53.4
ECA240G0220 Erigeron canadensis HOM05D003743 ORTHO05D004311 2.1e-158 563.5 682 53.4
Glyma.03G230500 Glycine max HOM05D003743 ORTHO05D004311 9.6e-156 554.7 682 52.3
Ca_20186_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 2.1e-155 553.5 688 49.6
AUR62020979 Chenopodium quinoa HOM05D003743 ORTHO05D004311 3.6e-155 552.7 657 51.4
SEGI_13209 Sequoiadendron giganteum HOM05D003743 ORTHO05D004311 1.8e-154 550.4 658 52.4
DCAR_004099 Daucus carota HOM05D003743 ORTHO05D004311 2.4e-154 550.1 658 50.8
TPR.G30857 Trifolium pratense HOM05D003743 ORTHO05D004311 3.1e-154 549.7 662 52.3
AUR62016972 Chenopodium quinoa HOM05D003743 ORTHO05D004311 4.0e-154 549.3 675 50.5
TPR.G34103 Trifolium pratense HOM05D003743 ORTHO05D004311 2.9e-152 543.1 684 50.6
Aqoxy3G03252 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 4.2e-151 539.3 664 51.8
Psat7g225840 Pisum sativum HOM05D003743 ORTHO05D004311 2.5e-148 530.0 685 49.2
Lj1g0026238 Lotus japonicus HOM05D003743 ORTHO05D004311 4.8e-147 525.8 661 49.8
Medtr4g032885 Medicago truncatula HOM05D003743 ORTHO05D004311 1.2e-145 521.2 679 49.8
AUR62043193 Chenopodium quinoa HOM05D003743 ORTHO05D004311 8.4e-144 515.0 667 48.7
Medtr7g099060 Medicago truncatula HOM05D003743 ORTHO05D004311 1.1e-143 514.6 659 50.5
Zm00001eb410600 Zea mays HOM05D003743 ORTHO05D004311 1.0e-141 508.1 662 47.9
AUR62014784 Chenopodium quinoa HOM05D003743 ORTHO05D004311 1.9e-140 503.8 648 49.1
arahy.Tifrunner.gnm1.ann1.58ANB0 Arachis hypogaea HOM05D003743 ORTHO05D004311 1.3e-139 501.1 656 49.2
Zm00001eb137720 Zea mays HOM05D003743 ORTHO05D004311 1.5e-137 494.2 663 47.1
MBI16_g34928_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 1.4e-135 487.6 648 51.2
Os12g0535900 Oryza sativa ssp. japonica HOM05D003743 ORTHO05D004311 1.4e-130 471.1 614 48.7
Sc06g0009130 Simmondsia chinensis HOM05D003743 ORTHO05D004311 1.2e-129 468.0 658 46.2
EL10Ac8g18529 Beta vulgaris HOM05D003743 ORTHO05D004311 1.8e-125 454.1 542 49.6
AagrBONN_evm.TU.Sc2ySwM_368.1522 Anthoceros agrestis HOM05D003743 ORTHO05D004311 5.5e-119 432.6 659 44.5
Mapoly0001s0024 Marchantia polymorpha HOM05D003743 ORTHO05D004311 1.4e-117 427.9 606 46.4
Pp3c12_17420 Physcomitrium patens HOM05D003743 ORTHO05D004311 1.3e-115 421.4 614 45.9
BolC1t03734H Brassica oleracea HOM05D003743 ORTHO05D004311 1.5e-103 381.3 419 55.4
FvH4_6g03621 Fragaria vesca HOM05D003743 ORTHO05D004311 1.2e-102 378.3 402 55.2
Actinidia05611 Actinidia chinensis HOM05D003743 ORTHO05D004311 2.7e-102 377.1 405 56.0
Glyma.13G060000 Glycine max HOM05D003743 ORTHO05D004311 1.8e-101 374.4 401 55.4
A03p68920 Brassica napus HOM05D003743 ORTHO05D004311 8.5e-96 355.5 656 41.3
Mapoly0009s0176 Marchantia polymorpha HOM05D003743 ORTHO05D004311 6.8e-93 345.9 670 40.6
SMO118G0429 Selaginella moellendorffii HOM05D003743 ORTHO05D004311 2.7e-81 307.4 558 39.4
BraSC39t46172Z Brassica rapa HOM05D003743 ORTHO05D004311 1.7e-75 288.1 542 39.1
GSVIVG01006453001 Vitis vinifera HOM05D003743 ORTHO05D004311 5.0e-72 276.6 236 66.9
Lj1P877T22 Lonicera japonica HOM05D003743 ORTHO05D004311 4.7e-70 270.0 305 51.1
CBR_g30024 Chara braunii HOM05D003743 ORTHO05D004311 2.7e-65 254.2 645 34.3
Oeu016117.1 Olea europaea HOM05D003743 ORTHO05D004311 5.2e-61 240.0 655 34.5
ECA248G2279 Erigeron canadensis HOM05D003743 ORTHO05D004311 1.2e-60 238.8 436 38.3
Zm00001eb087640 Zea mays HOM05D003743 ORTHO05D004311 2.4e-50 204.5 274 41.6
Lalb_Chr20g0113451 Lupinus albus HOM05D003743 ORTHO05D004311 4.8e-30 137.1 119 58.0
MBI04_g35990_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 7.6e-28 129.8 224 46.0
FvH4_6g03622 Fragaria vesca HOM05D003743 ORTHO05D004311 1.4e-26 125.6 77 79.2
EL10Ac4g08952 Beta vulgaris HOM05D003743 ORTHO05D004311 2.7e-25 121.3 155 52.3
Aqoxy3G03215 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 3.0e-24 117.9 109 54.1
SGA_v2.0_scaffold49G18283 Striga asiatica HOM05D003743 ORTHO05D004311 2.4e-21 108.2 391 26.6
ECA246G3327 Erigeron canadensis HOM05D001482 ORTHO05D001499 6.9e-21 106.7 79 68.4
MD05G1317500 Malus domestica HOM05D003743 ORTHO05D004311 2.6e-20 104.8 125 54.4
Aqoxy3G03214 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 7.6e-20 103.2 78 71.8
Aqoxy3G03213 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 3.3e-15 87.8 74 60.8
Cre03.g196450 Chlamydomonas reinhardtii HOM05D003743 ORTHO05D004311 4.3e-15 87.4 468 22.0
Rhsim02G0125200 Rhododendron simsii HOM05D003743 ORTHO05D004311 1.8e-13 82.0 73 54.8
EL10Ac5g12107 Beta vulgaris HOM05D003743 ORTHO05D004311 2.2e-11 75.1 49 69.4


User provided reference genes

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