Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0455571 Rosa chinensis HOM05D000464 ORTHO05D006292 2.2e-84 315.5 149 100.0
Eucgr.B00173 Eucalyptus grandis HOM05D000464 ORTHO05D006292 2.8e-42 175.6 105 80.0
CiPaw.11G014000 Carya illinoinensis HOM05D000464 ORTHO05D006292 3.6e-42 175.3 105 80.0
Haze_07635 Corylus avellana HOM05D000464 ORTHO05D006292 3.6e-42 175.3 105 79.0
Sabra15G0110600 Salix brachista HOM05D000464 ORTHO05D000408 8.1e-42 174.1 105 79.0
Actinidia11916 Actinidia chinensis HOM05D000464 ORTHO05D000408 2.3e-41 172.6 141 63.8
arahy.Tifrunner.gnm1.ann1.IR4XNQ Arachis hypogaea HOM05D000464 ORTHO05D006292 2.3e-41 172.6 142 64.1
CDE06G2114 Ceratophyllum demersum HOM05D000464 ORTHO05D006292 2.3e-41 172.6 132 62.9
vmacro16690 Vaccinium macrocarpon HOM05D000464 ORTHO05D006292 2.3e-41 172.6 132 64.4
arahy.Tifrunner.gnm1.ann1.733L1L Arachis hypogaea HOM05D000464 ORTHO05D006292 5.2e-41 171.4 142 63.4
CSS0041467 Camellia sinensis var. sinensis HOM05D000464 ORTHO05D000408 6.8e-41 171.0 119 68.9
Hund05615 Selenicereus undatus HOM05D000464 ORTHO05D006292 8.9e-41 170.6 132 65.2
TAR371G0383 Trochodendron aralioides HOM05D000464 ORTHO05D006292 1.2e-40 170.2 105 76.2
Rhsim12G0170400 Rhododendron simsii HOM05D000464 ORTHO05D006292 2.0e-40 169.5 105 75.2
AUR62022080 Chenopodium quinoa HOM05D000464 ORTHO05D006292 2.6e-40 169.1 132 65.2
EL10Ac7g18034 Beta vulgaris HOM05D000464 ORTHO05D006292 3.4e-40 168.7 132 65.2
MELO3C026239.2 Cucumis melo HOM05D000464 ORTHO05D006292 3.4e-40 168.7 105 75.2
CsaV3_1G000870 Cucumis sativus L. HOM05D000464 ORTHO05D006292 3.4e-40 168.7 105 75.2
Glyma.05G043700 Glycine max HOM05D000464 ORTHO05D006292 3.4e-40 168.7 142 62.0
AUR62001250 Chenopodium quinoa HOM05D000464 ORTHO05D006292 4.4e-40 168.3 132 65.2
Lalb_Chr07g0183151 Lupinus albus HOM05D000464 ORTHO05D006292 5.8e-40 167.9 142 63.4
PGR083G1837 Punica granatum HOM05D000464 ORTHO05D006292 5.8e-40 167.9 142 62.0
ClCG06G017570 Citrullus lanatus HOM05D000464 ORTHO05D006292 7.5e-40 167.5 105 74.3
Glyma.17G126200 Glycine max HOM05D000464 ORTHO05D006292 7.5e-40 167.5 137 62.8
Manes.06G112800 Manihot esculenta HOM05D000464 ORTHO05D006292 7.5e-40 167.5 105 74.3
Sed0016445 Sechium edule HOM05D000464 ORTHO05D006292 7.5e-40 167.5 105 75.2
Phvul.003G207100 Phaseolus vulgaris HOM05D000464 ORTHO05D006292 9.9e-40 167.2 105 76.2
Lalb_Chr12g0202001 Lupinus albus HOM05D000464 ORTHO05D006292 1.3e-39 166.8 141 61.7
DCAR_007461 Daucus carota HOM05D000464 ORTHO05D006292 1.7e-39 166.4 105 74.3
MD14G1166400 Malus domestica HOM05D000464 ORTHO05D006292 2.2e-39 166.0 105 76.2
Ca_19433_v3 Cicer arietinum L. HOM05D000464 ORTHO05D006292 2.9e-39 165.6 141 61.7
TAR629G1181 Trochodendron aralioides HOM05D000464 ORTHO05D006292 2.9e-39 165.6 105 76.2
Ah.08g218380 Amaranthus hybridus HOM05D000464 ORTHO05D006292 4.9e-39 164.9 105 73.3
DCAR_026196 Daucus carota HOM05D000464 ORTHO05D006292 1.1e-38 163.7 105 72.4
VMungo1215G0985 Vigna mungo HOM05D000464 ORTHO05D006292 1.1e-38 163.7 132 62.1
ECA247G3798 Erigeron canadensis HOM05D000464 ORTHO05D006292 1.4e-38 163.3 131 64.1
Lj1g0006305 Lotus japonicus HOM05D000464 ORTHO05D006292 3.2e-38 162.2 132 61.4
vmacro19271 Vaccinium macrocarpon HOM05D000464 ORTHO05D006292 3.2e-38 162.2 105 72.4
vmacro23261 Vaccinium macrocarpon HOM05D000464 ORTHO05D006292 3.2e-38 162.2 105 72.4
Medtr4g104380 Medicago truncatula HOM05D000464 ORTHO05D006292 4.1e-38 161.8 131 62.6
MD06G1161200 Malus domestica HOM05D000464 ORTHO05D006292 7.1e-38 161.0 105 74.3
TPR.G22908 Trifolium pratense HOM05D000464 ORTHO05D006292 7.1e-38 161.0 131 62.6
Gohir.A09G244600 Gossypium hirsutum HOM05D000464 ORTHO05D006292 9.2e-38 160.6 102 72.5
Psat4g062800 Pisum sativum HOM05D000464 ORTHO05D006292 9.2e-38 160.6 104 73.1
FvH4_5g06790 Fragaria vesca HOM05D000464 ORTHO05D006292 1.2e-37 160.2 105 75.2
FAN08G0579 Fragaria x ananassa HOM05D000464 ORTHO05D006292 1.2e-37 160.2 105 75.2
FAN13G2293 Fragaria x ananassa HOM05D000464 ORTHO05D006292 1.2e-37 160.2 105 75.2
AT5G50230 Arabidopsis thaliana HOM05D000464 ORTHO05D006292 2.7e-37 159.1 132 59.1
A10p08470 Brassica napus HOM05D000464 ORTHO05D006292 2.7e-37 159.1 132 59.8
Rhsim08G0181600 Rhododendron simsii HOM05D000464 ORTHO05D006292 2.7e-37 159.1 105 68.6
AL8G24250 Arabidopsis lyrata HOM05D000464 ORTHO05D006292 3.5e-37 158.7 132 59.1
Carub.0008s1023 Capsella rubella HOM05D000464 ORTHO05D006292 3.5e-37 158.7 132 59.1
Lsat_1_v5_gn_1_28641 Lactuca sativa HOM05D000464 ORTHO05D006292 3.5e-37 158.7 118 66.9
Thhalv10013321m.g Eutrema salsugineum HOM05D000464 ORTHO05D006292 4.6e-37 158.3 132 59.1
Lj4g0023649 Lotus japonicus HOM05D000464 ORTHO05D006292 4.6e-37 158.3 105 72.4
RcHm_v2.0_Chr7g0191771 Rosa chinensis HOM05D000464 ORTHO05D006292 4.6e-37 158.3 105 75.2
BraSC37t46158Z Brassica rapa HOM05D000464 ORTHO05D006292 6.0e-37 157.9 132 59.1
FAN04G0526 Fragaria x ananassa HOM05D000464 ORTHO05D006292 6.0e-37 157.9 105 74.3
FAN18G1884 Fragaria x ananassa HOM05D000464 ORTHO05D000408 6.0e-37 157.9 105 74.3
Gohir.D09G245500 Gossypium hirsutum HOM05D000464 ORTHO05D006292 6.0e-37 157.9 102 72.5
Gorai.006G269900 Gossypium raimondii HOM05D000464 ORTHO05D006292 6.0e-37 157.9 102 72.5
unitig_21.g20437 Utricularia gibba HOM05D000464 ORTHO05D006292 6.0e-37 157.9 105 68.6
Psat5g117120 Pisum sativum HOM05D000464 ORTHO05D006292 7.8e-37 157.5 104 71.2
Potri.015G087200 Populus trichocarpa HOM05D000464 ORTHO05D006292 1.0e-36 157.1 105 72.4
Prupe.5G160700 Prunus persica HOM05D000464 ORTHO05D006292 1.3e-36 156.8 105 73.3
HanXRQChr04g0100971 Helianthus annuus HOM05D000464 ORTHO05D006292 2.3e-36 156.0 140 59.3
TPR.G37555 Trifolium pratense HOM05D000464 ORTHO05D006292 2.3e-36 156.0 132 60.6
SalBow6G1450 Salvia bowleyana HOM05D000464 ORTHO05D006292 3.9e-36 155.2 103 68.0
SalBow6G2987 Salvia bowleyana HOM05D000464 ORTHO05D006292 3.9e-36 155.2 103 68.0
SHI17349 Sapria himalayana HOM05D000464 ORTHO05D006292 3.9e-36 155.2 103 68.0
CAN.G472.58 Capsicum annuum HOM05D000464 ORTHO05D006292 6.6e-36 154.5 105 66.7
Sp6g12330 Schrenkiella parvula HOM05D000464 ORTHO05D006292 6.6e-36 154.5 119 62.2
Aqoxy3G01296 Aquilegia oxysepala HOM05D000464 ORTHO05D006292 8.6e-36 154.1 105 67.6
Cfa009511 Carpinus fangiana HOM05D000464 ORTHO05D000408 1.5e-35 153.3 105 71.4
CARHR258380 Cardamine hirsuta HOM05D000464 ORTHO05D006292 9.5e-35 150.6 119 60.5
Ah.15g095450 Amaranthus hybridus HOM05D000464 ORTHO05D006292 1.2e-34 150.2 119 63.9
Lsat_1_v5_gn_4_78400 Lactuca sativa HOM05D000464 ORTHO05D006292 2.1e-34 149.4 104 65.4
HPP92_021440 Vanilla planifolia HOM05D000464 ORTHO05D006292 2.8e-34 149.1 105 65.7
HPP92_027101 Vanilla planifolia HOM05D000464 ORTHO05D006292 2.8e-34 149.1 105 65.7
Solyc03g111740.3 Solanum lycopersicum HOM05D000464 ORTHO05D006292 6.2e-34 147.9 142 54.2
Sopen03g030860 Solanum pennellii HOM05D000464 ORTHO05D006292 6.2e-34 147.9 142 54.2
Actinidia36765 Actinidia chinensis HOM05D000464 ORTHO05D006292 8.1e-34 147.5 105 66.7
PGSC0003DMG402015159 Solanum tuberosum HOM05D000464 ORTHO05D006292 8.1e-34 147.5 142 54.2
QL10p005870 Quercus lobata HOM05D000464 ORTHO05D006292 1.1e-33 147.1 103 69.9
Ca_16109_v3 Cicer arietinum L. HOM05D000464 ORTHO05D006292 1.4e-33 146.7 132 58.3
Cc04_g10810 Coffea canephora HOM05D000464 ORTHO05D006292 1.4e-33 146.7 115 63.5
Cc04_g10820 Coffea canephora HOM05D000464 ORTHO05D006292 2.4e-33 146.0 105 65.7
TWI39G0801 Tripterygium wilfordii HOM05D000464 ORTHO05D006292 3.1e-33 145.6 119 60.5
Lj9A440T62 Lonicera japonica HOM05D000464 ORTHO05D006292 6.8e-33 144.4 105 67.6
Thecc.03G119100 Theobroma cacao HOM05D000464 ORTHO05D006292 1.2e-32 143.7 104 63.5
BcaC04g20812 Brassica carinata HOM05D000464 ORTHO05D006292 1.5e-32 143.3 132 54.5
C09p38870 Brassica napus HOM05D000464 ORTHO05D006292 1.5e-32 143.3 132 54.5
BcaB08g35394 Brassica carinata HOM05D000464 ORTHO05D006292 2.6e-32 142.5 132 54.5
CANSAT80G2689 Cannabis sativa HOM05D000464 ORTHO05D006292 2.6e-32 142.5 104 64.4
SEGI_39654 Sequoiadendron giganteum HOM05D000464 ORTHO05D006292 2.6e-32 142.5 141 51.8
Duzib205G1058 Durio zibethinus HOM05D000464 ORTHO05D006292 5.8e-32 141.4 104 62.5
Peaxi162Scf00089g01023 Petunia axillaris HOM05D000464 ORTHO05D006292 7.6e-32 141.0 105 62.9
Hma1.2p1_0046F.1_g027400 Hydrangea macrophylla HOM05D000464 ORTHO05D006292 1.3e-31 140.2 131 55.7
COL.COLO4_04956 Corchorus olitorius HOM05D000464 ORTHO05D006292 6.4e-31 137.9 102 63.7
Nitab4.5_0000510g0020 Nicotiana tabacum HOM05D000464 ORTHO05D006292 9.2e-30 134.0 105 59.0
Nn4g22524 Nelumbo nucifera HOM05D000464 ORTHO05D006292 1.2e-29 133.7 103 63.1
SGA_v2.0_scaffold7G04174 Striga asiatica HOM05D000464 ORTHO05D006292 2.1e-29 132.9 142 50.7
Gorai.008G203700 Gossypium raimondii HOM05D000464 ORTHO05D006292 3.5e-29 132.1 104 63.5
Sc04g0001170 Simmondsia chinensis HOM05D000464 ORTHO05D006292 3.5e-29 132.1 118 57.6
Atru.chr9.967 Acer truncatum HOM05D000464 ORTHO05D000408 4.6e-29 131.7 105 63.8
MBI10_g14637_MAGBIO Magnolia biondii HOM05D000464 ORTHO05D006292 6.0e-29 131.3 136 50.7
Nitab4.5_0001812g0090 Nicotiana tabacum HOM05D000464 ORTHO05D006292 1.0e-28 130.6 105 58.1
ATR0580G338 Amborella trichopoda HOM05D000464 ORTHO05D006292 3.9e-28 128.6 143 48.3
Manes.14G056900 Manihot esculenta HOM05D000464 ORTHO05D006292 3.9e-28 128.6 105 61.0
Mapoly0102s0055 Marchantia polymorpha HOM05D000464 ORTHO05D006292 3.9e-28 128.6 109 54.1
Pp3c2_6010 Physcomitrium patens HOM05D000464 ORTHO05D006292 3.9e-28 128.6 103 53.4
MSTRG.4338 Avicennia marina HOM05D000464 ORTHO05D006292 5.1e-28 128.3 142 47.9
PSO067G0023 Papaver somniferum HOM05D000464 ORTHO05D006292 6.6e-28 127.9 105 57.1
CDE08G0852 Ceratophyllum demersum HOM05D000464 ORTHO05D006292 8.7e-28 127.5 105 57.1
THA.LOC104824993 Tarenaya hassleriana HOM05D000464 ORTHO05D006292 8.7e-28 127.5 132 49.2
CBR_g37122 Chara braunii HOM05D000464 ORTHO05D006292 1.5e-27 126.7 131 48.1
PSO063G1093 Papaver somniferum HOM05D000464 ORTHO05D006292 1.5e-27 126.7 105 56.2
AagrBONN_evm.TU.Sc2ySwM_344.121 Anthoceros agrestis HOM05D000464 ORTHO05D006292 1.9e-27 126.3 106 53.8
CBR_g12113 Chara braunii HOM05D000464 ORTHO05D006292 2.5e-27 125.9 131 48.1
Lj5A133T97 Lonicera japonica HOM05D000464 ORTHO05D006292 5.6e-27 124.8 105 58.1
Migut.D02035 Erythranthe guttata HOM05D000464 ORTHO05D006292 1.6e-26 123.2 142 47.2
Actinidia19369 Actinidia chinensis HOM05D000464 ORTHO05D006292 1.1e-25 120.6 137 51.8
Medtr3g075400 Medicago truncatula HOM05D000464 ORTHO05D006292 5.2e-25 118.2 104 58.7
Ciclev10019772m.g Citrus clementina HOM05D000464 ORTHO05D006292 6.9e-25 117.9 106 57.5
Aa31LG3G6060 Aethionema arabicum HOM05D000464 ORTHO05D006292 7.6e-24 114.4 132 43.9
Aqoxy5G03645 Aquilegia oxysepala HOM05D000464 ORTHO05D006292 4.9e-23 111.7 105 52.4
MBI02_g01118_MAGBIO Magnolia biondii HOM05D000464 ORTHO05D006292 8.4e-23 110.9 148 40.5
SMO203G0251 Selaginella moellendorffii HOM05D000464 ORTHO05D006292 8.4e-23 110.9 133 45.1
Cpa.g.sc1360.1 Carica papaya HOM05D000464 ORTHO05D000408 2.7e-21 105.9 83 62.7
Peaxi162Scf00763g00043 Petunia axillaris HOM05D001333 ORTHO05D001208 2.3e-20 102.8 138 39.1
Pp3c1_39330 Physcomitrium patens HOM05D000464 ORTHO05D006292 5.1e-20 101.7 98 48.0
Zm00001eb057050 Zea mays HOM05D000464 ORTHO05D006292 7.3e-19 97.8 105 45.7
GSVIVG01007587001 Vitis vinifera HOM05D000464 ORTHO05D006292 2.8e-18 95.9 63 69.8
Os03g0746600 Oryza sativa ssp. japonica HOM05D000464 ORTHO05D006292 3.8e-15 85.5 139 33.1
Actinidia16210 Actinidia chinensis HOM05D000464 ORTHO05D006292 7.1e-14 81.3 48 77.1
Sabra12G0065600 Salix brachista HOM05D000464 ORTHO05D000408 7.9e-13 77.8 105 42.9
Haze_07636 Corylus avellana HOM05D000007 ORTHO05D000017 1.3e-12 77.0 51 70.6
AagrBONN_evm.TU.Sc2ySwM_228.4579 Anthoceros agrestis HOM05D000464 ORTHO05D006292 6.7e-12 74.7 104 32.7
MCO16G619 Micromonas commoda HOM05D000464 ORTHO05D006292 9.6e-11 70.9 107 36.4
Medtr4g007500 Medicago truncatula HOM05D000464 ORTHO05D006292 2.4e-09 66.2 61 52.5
Sc23g0006430 Simmondsia chinensis HOM05D000464 ORTHO05D006292 1.5e-08 63.5 114 30.7
PRCOL_00006710 Prasinoderma coloniale HOM05D000464 ORTHO05D006292 9.9e-08 60.8 106 36.8
TAR622G0239 Trochodendron aralioides HOM05D000464 ORTHO05D006292 2.2e-07 59.7 41 65.9
SHI06205 Sapria himalayana HOM05D005323 ORTHO05D000023 4.2e-06 55.5 104 29.8


User provided reference genes

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