Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0455561 Rosa chinensis HOM05D000464 ORTHO05D006292 7.4e-36 153.3 75 100.0
VMungo1215G0985 Vigna mungo HOM05D000464 ORTHO05D006292 5.2e-21 104.0 68 70.6
Lj5A133T97 Lonicera japonica HOM05D000464 ORTHO05D006292 2.6e-20 101.7 68 69.1
Migut.D02035 Erythranthe guttata HOM05D000464 ORTHO05D006292 1.3e-19 99.4 68 66.2
Nitab4.5_0001812g0090 Nicotiana tabacum HOM05D000464 ORTHO05D006292 1.3e-19 99.4 68 66.2
PGSC0003DMG402015159 Solanum tuberosum HOM05D000464 ORTHO05D006292 1.3e-19 99.4 68 66.2
MELO3C026239.2 Cucumis melo HOM05D000464 ORTHO05D006292 1.7e-19 99.0 68 66.2
CsaV3_1G000870 Cucumis sativus L. HOM05D000464 ORTHO05D006292 1.7e-19 99.0 68 66.2
Cpa.g.sc1360.1 Carica papaya HOM05D000464 ORTHO05D000408 2.2e-19 98.6 68 67.6
COL.COLO4_04956 Corchorus olitorius HOM05D000464 ORTHO05D006292 2.2e-19 98.6 68 69.1
Medtr3g075400 Medicago truncatula HOM05D000464 ORTHO05D006292 4.8e-19 97.4 68 67.6
TPR.G22908 Trifolium pratense HOM05D000464 ORTHO05D006292 8.2e-19 96.7 68 67.6
Oeu045491.1 Olea europaea HOM05D000464 ORTHO05D000397 1.4e-18 95.9 68 63.2
Atru.chr9.967 Acer truncatum HOM05D000464 ORTHO05D000408 1.8e-18 95.5 68 64.7
HanXRQChr04g0100971 Helianthus annuus HOM05D000464 ORTHO05D006292 1.8e-18 95.5 67 68.7
Lalb_Chr12g0202001 Lupinus albus HOM05D000464 ORTHO05D006292 5.3e-18 94.0 68 64.7
TAR629G1181 Trochodendron aralioides HOM05D000464 ORTHO05D006292 9.1e-18 93.2 68 61.8
MBI10_g14637_MAGBIO Magnolia biondii HOM05D000464 ORTHO05D006292 1.2e-17 92.8 68 61.8
Ca_16109_v3 Cicer arietinum L. HOM05D000464 ORTHO05D006292 2.6e-17 91.7 68 63.2
CDE08G0852 Ceratophyllum demersum HOM05D000464 ORTHO05D006292 3.5e-17 91.3 68 64.7
Thhalv10013321m.g Eutrema salsugineum HOM05D000464 ORTHO05D006292 4.5e-17 90.9 68 60.3
Psat5g117120 Pisum sativum HOM05D000464 ORTHO05D006292 5.9e-17 90.5 68 61.8
Cc04_g10810 Coffea canephora HOM05D000464 ORTHO05D006292 1.0e-16 89.7 68 60.3
SGA_v2.0_scaffold7G04174 Striga asiatica HOM05D000464 ORTHO05D006292 1.0e-16 89.7 67 62.7
Aa31LG3G6060 Aethionema arabicum HOM05D000464 ORTHO05D006292 2.2e-16 88.6 68 58.8
Carub.0008s1023 Capsella rubella HOM05D000464 ORTHO05D006292 5.0e-16 87.4 68 57.4
Lj4g0023649 Lotus japonicus HOM05D000464 ORTHO05D006292 5.0e-16 87.4 68 63.2
Aqoxy3G01296 Aquilegia oxysepala HOM05D000464 ORTHO05D006292 8.5e-16 86.7 68 61.8
PSO063G1093 Papaver somniferum HOM05D000464 ORTHO05D006292 8.5e-16 86.7 68 60.3
AT5G50230 Arabidopsis thaliana HOM05D000464 ORTHO05D006292 1.5e-15 85.9 68 55.9
AL8G24250 Arabidopsis lyrata HOM05D000464 ORTHO05D006292 1.9e-15 85.5 68 55.9
Cc04_g10820 Coffea canephora HOM05D000464 ORTHO05D006292 3.2e-15 84.7 68 60.3
Phvul.003G207100 Phaseolus vulgaris HOM05D000464 ORTHO05D006292 3.2e-15 84.7 68 60.3
vmacro19271 Vaccinium macrocarpon HOM05D000464 ORTHO05D006292 5.5e-15 84.0 68 61.8
vmacro23261 Vaccinium macrocarpon HOM05D000464 ORTHO05D006292 5.5e-15 84.0 68 61.8
Ca_19433_v3 Cicer arietinum L. HOM05D000464 ORTHO05D006292 1.6e-14 82.4 68 60.3
Lsat_1_v5_gn_1_28641 Lactuca sativa HOM05D000464 ORTHO05D006292 1.0e-13 79.7 68 57.4
Lalb_Chr07g0183151 Lupinus albus HOM05D000464 ORTHO05D006292 1.8e-13 79.0 68 57.4
CAN.G472.58 Capsicum annuum HOM05D000464 ORTHO05D006292 2.3e-13 78.6 68 55.9
Sp6g12330 Schrenkiella parvula HOM05D000464 ORTHO05D006292 5.2e-13 77.4 68 54.4
Solyc03g111740.3 Solanum lycopersicum HOM05D000464 ORTHO05D006292 5.2e-13 77.4 68 54.4
Glyma.05G043700 Glycine max HOM05D000464 ORTHO05D006292 8.8e-13 76.6 68 55.9
Lj1g0006305 Lotus japonicus HOM05D000464 ORTHO05D006292 8.8e-13 76.6 68 54.4
Glyma.17G126200 Glycine max HOM05D000464 ORTHO05D006292 1.5e-12 75.9 68 54.4
Sopen03g030860 Solanum pennellii HOM05D000464 ORTHO05D006292 1.5e-12 75.9 68 52.9
MBI02_g01118_MAGBIO Magnolia biondii HOM05D000464 ORTHO05D006292 7.5e-12 73.6 72 50.0
arahy.Tifrunner.gnm1.ann1.IR4XNQ Arachis hypogaea HOM05D000464 ORTHO05D006292 9.7e-12 73.2 68 52.9
Hma1.2p1_0046F.1_g027400 Hydrangea macrophylla HOM05D000464 ORTHO05D006292 9.7e-12 73.2 68 55.9
Peaxi162Scf00089g01023 Petunia axillaris HOM05D000464 ORTHO05D006292 9.7e-12 73.2 68 52.9
CARHR258380 Cardamine hirsuta HOM05D000464 ORTHO05D006292 1.7e-11 72.4 68 50.0
AagrBONN_evm.TU.Sc2ySwM_344.121 Anthoceros agrestis HOM05D000464 ORTHO05D006292 2.8e-11 71.6 68 44.1
Os03g0746600 Oryza sativa ssp. japonica HOM05D000464 ORTHO05D006292 2.8e-11 71.6 68 48.5
Mapoly0102s0055 Marchantia polymorpha HOM05D000464 ORTHO05D006292 3.7e-11 71.2 67 43.3
CSS0041467 Camellia sinensis var. sinensis HOM05D000464 ORTHO05D000408 4.8e-11 70.9 68 51.5
HPP92_021440 Vanilla planifolia HOM05D000464 ORTHO05D006292 6.3e-11 70.5 66 43.9
HPP92_027101 Vanilla planifolia HOM05D000464 ORTHO05D006292 6.3e-11 70.5 66 43.9
ATR0580G338 Amborella trichopoda HOM05D000464 ORTHO05D006292 1.1e-10 69.7 68 51.5
PGR083G1837 Punica granatum HOM05D000464 ORTHO05D006292 1.8e-10 68.9 68 51.5
Pp3c2_6010 Physcomitrium patens HOM05D000464 ORTHO05D006292 2.4e-10 68.6 67 41.8
Actinidia36765 Actinidia chinensis HOM05D000464 ORTHO05D006292 4.1e-10 67.8 68 48.5
MD06G1161200 Malus domestica HOM05D000464 ORTHO05D006292 4.1e-10 67.8 68 51.5
arahy.Tifrunner.gnm1.ann1.733L1L Arachis hypogaea HOM05D000464 ORTHO05D006292 7.0e-10 67.0 68 47.1
Pp3c1_39330 Physcomitrium patens HOM05D000464 ORTHO05D006292 7.0e-10 67.0 67 40.3
Cfa009511 Carpinus fangiana HOM05D000464 ORTHO05D000408 9.1e-10 66.6 68 47.1
Haze_07635 Corylus avellana HOM05D000464 ORTHO05D006292 9.1e-10 66.6 68 47.1
AUR62022080 Chenopodium quinoa HOM05D000464 ORTHO05D006292 1.2e-09 66.2 68 48.5
ECA247G3798 Erigeron canadensis HOM05D000464 ORTHO05D006292 1.2e-09 66.2 68 48.5
MSTRG.4338 Avicennia marina HOM05D000464 ORTHO05D006292 2.0e-09 65.5 68 48.5
SMO203G0251 Selaginella moellendorffii HOM05D000464 ORTHO05D006292 2.7e-09 65.1 69 42.0
Medtr4g104380 Medicago truncatula HOM05D000464 ORTHO05D006292 3.5e-09 64.7 68 50.0
GSVIVG01007587001 Vitis vinifera HOM05D000464 ORTHO05D006292 3.5e-09 64.7 68 48.5
AUR62001250 Chenopodium quinoa HOM05D000464 ORTHO05D006292 4.5e-09 64.3 68 47.1
MD14G1166400 Malus domestica HOM05D000464 ORTHO05D006292 4.5e-09 64.3 68 50.0
ClCG06G017570 Citrullus lanatus HOM05D000464 ORTHO05D006292 1.7e-08 62.4 68 45.6
vmacro16690 Vaccinium macrocarpon HOM05D000464 ORTHO05D006292 1.7e-08 62.4 68 47.1
Rhsim12G0170400 Rhododendron simsii HOM05D000464 ORTHO05D006292 2.2e-08 62.0 68 48.5
Sed0016445 Sechium edule HOM05D000464 ORTHO05D006292 2.2e-08 62.0 68 45.6
Psat4g062800 Pisum sativum HOM05D000464 ORTHO05D006292 2.9e-08 61.6 68 44.1
Duzib205G1058 Durio zibethinus HOM05D000464 ORTHO05D006292 5.0e-08 60.8 68 47.1
Thecc.03G119100 Theobroma cacao HOM05D000464 ORTHO05D006292 5.0e-08 60.8 68 47.1
Gohir.A09G244600 Gossypium hirsutum HOM05D000464 ORTHO05D006292 6.5e-08 60.5 68 45.6
RcHm_v2.0_Chr7g0191771 Rosa chinensis HOM05D000464 ORTHO05D006292 8.5e-08 60.1 68 47.1
Actinidia11916 Actinidia chinensis HOM05D000464 ORTHO05D000408 1.1e-07 59.7 68 47.1
Ciclev10019772m.g Citrus clementina HOM05D000464 ORTHO05D006292 1.1e-07 59.7 68 42.6
EL10Ac7g18034 Beta vulgaris HOM05D000464 ORTHO05D006292 1.5e-07 59.3 68 44.1
PSO067G0023 Papaver somniferum HOM05D000464 ORTHO05D006292 1.5e-07 59.3 68 47.1
QL10p005870 Quercus lobata HOM05D000464 ORTHO05D006292 1.9e-07 58.9 68 44.1
CANSAT80G2689 Cannabis sativa HOM05D000464 ORTHO05D006292 2.5e-07 58.5 68 41.2
Lj9A440T62 Lonicera japonica HOM05D000464 ORTHO05D006292 2.5e-07 58.5 68 44.1
CiPaw.11G014000 Carya illinoinensis HOM05D000464 ORTHO05D006292 3.2e-07 58.2 68 44.1
Sc23g0006430 Simmondsia chinensis HOM05D000464 ORTHO05D006292 3.2e-07 58.2 68 41.2
FAN04G0526 Fragaria x ananassa HOM05D000464 ORTHO05D006292 4.2e-07 57.8 67 46.3
Manes.14G056900 Manihot esculenta HOM05D000464 ORTHO05D006292 1.2e-06 56.2 68 39.7
Manes.06G112800 Manihot esculenta HOM05D000464 ORTHO05D006292 2.1e-06 55.5 67 40.3
Hund05615 Selenicereus undatus HOM05D000464 ORTHO05D006292 4.7e-06 54.3 68 39.7
A10p08470 Brassica napus HOM05D000464 ORTHO05D006292 6.1e-06 53.9 68 39.7
BraSC37t46158Z Brassica rapa HOM05D000464 ORTHO05D006292 6.1e-06 53.9 68 39.7


User provided reference genes

Program Settings