Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0451831 Rosa chinensis HOM05D005810 ORTHO05D007279 0.0e+00 1450.3 735 100.0
FvH4_6g03330 Fragaria vesca HOM05D005810 ORTHO05D007279 0.0e+00 1304.7 736 89.3
MD04G1221700 Malus domestica HOM05D005810 ORTHO05D007279 0.0e+00 1138.6 735 78.9
Prupe.6G340900 Prunus persica HOM05D005810 ORTHO05D007279 0.0e+00 1134.8 736 78.9
FAN05G1843 Fragaria x ananassa HOM05D005810 ORTHO05D007279 7.9e-308 1060.1 697 79.1
MD12G1237800 Malus domestica HOM05D005810 ORTHO05D007279 2.7e-300 1035.0 691 76.4
QL03p024871 Quercus lobata HOM05D005810 ORTHO05D007279 1.9e-293 1012.3 745 70.7
Cfa006452 Carpinus fangiana HOM05D005810 ORTHO05D007279 2.3e-291 1005.4 706 72.0
Potri.005G051400 Populus trichocarpa HOM05D005810 ORTHO05D007279 6.5e-286 987.3 706 71.5
Thecc.05G287300 Theobroma cacao HOM05D005810 ORTHO05D007279 1.0e-283 979.9 746 67.7
GSVIVG01021833001 Vitis vinifera HOM05D005810 ORTHO05D007279 1.8e-283 979.2 700 71.1
COL.COLO4_15299 Corchorus olitorius HOM05D005810 ORTHO05D007279 1.2e-282 976.5 700 70.3
CSS0013071 Camellia sinensis var. sinensis HOM05D005810 ORTHO05D007279 3.8e-278 961.4 715 68.5
Duzib177G1000 Durio zibethinus HOM05D005810 ORTHO05D007279 3.6e-276 954.9 746 66.2
Ciclev10003382m.g Citrus clementina HOM05D005810 ORTHO05D007279 1.0e-275 953.4 698 70.2
CANSAT54G2140 Cannabis sativa HOM05D005810 ORTHO05D007279 2.0e-274 949.1 745 66.7
CSS0027419 Camellia sinensis var. sinensis HOM05D005810 ORTHO05D007279 9.8e-274 946.8 711 68.2
MELO3C024669.2 Cucumis melo HOM05D005810 ORTHO05D007279 1.3e-270 936.4 706 68.0
arahy.Tifrunner.gnm1.ann1.BBX725 Arachis hypogaea HOM05D005810 ORTHO05D007279 4.3e-269 931.4 710 68.2
ClCG06G009190 Citrullus lanatus HOM05D005810 ORTHO05D007279 1.6e-268 929.5 737 65.9
arahy.Tifrunner.gnm1.ann1.E80190 Arachis hypogaea HOM05D005810 ORTHO05D007279 2.1e-268 929.1 710 68.0
Sed0015078 Sechium edule HOM05D005810 ORTHO05D007279 1.0e-267 926.8 708 68.2
Gohir.A11G254200 Gossypium hirsutum HOM05D005810 ORTHO05D007279 2.0e-266 922.5 703 67.0
THA.LOC104821678 Tarenaya hassleriana HOM05D005810 ORTHO05D007279 2.6e-266 922.2 734 65.0
Cpa.g.sc117.72 Carica papaya HOM05D005810 ORTHO05D007279 1.4e-264 916.4 748 65.1
Gorai.007G284000 Gossypium raimondii HOM05D005810 ORTHO05D007279 1.4e-264 916.4 750 64.3
Gohir.D11G264000 Gossypium hirsutum HOM05D005810 ORTHO05D007279 2.0e-263 912.5 745 64.2
Eucgr.B01694 Eucalyptus grandis HOM05D005810 ORTHO05D007279 7.3e-261 904.0 706 66.0
Lj1g0027742 Lotus japonicus HOM05D005810 ORTHO05D007279 8.0e-260 900.6 705 66.1
Glyma.03G245900 Glycine max HOM05D005810 ORTHO05D007279 4.0e-259 898.3 703 65.1
Lalb_Chr18g0045021 Lupinus albus HOM05D005810 ORTHO05D007279 2.6e-258 895.6 705 65.7
Rhsim05G0160900 Rhododendron simsii HOM05D005810 ORTHO05D007279 6.4e-257 891.0 718 64.1
AT3G04820 Arabidopsis thaliana HOM05D005810 ORTHO05D007279 9.2e-256 887.1 733 61.9
VMungo0222G0001 Vigna mungo HOM05D005810 ORTHO05D007279 2.7e-255 885.6 705 64.7
AL3G14980 Arabidopsis lyrata HOM05D005810 ORTHO05D007279 7.8e-255 884.0 737 61.7
CARHR079070 Cardamine hirsuta HOM05D005810 ORTHO05D007279 6.6e-254 880.9 733 62.3
PSO832G3650 Papaver somniferum HOM05D005810 ORTHO05D007279 7.3e-253 877.5 756 62.0
Phvul.006G100200 Phaseolus vulgaris HOM05D005810 ORTHO05D007279 1.2e-252 876.7 703 64.6
Migut.B01074 Erythranthe guttata HOM05D005810 ORTHO05D007279 1.6e-252 876.3 711 64.6
Aqoxy5G00419 Aquilegia oxysepala HOM05D005810 ORTHO05D007279 2.1e-252 875.9 726 63.8
PSO210G1835 Papaver somniferum HOM05D005810 ORTHO05D007279 2.8e-252 875.5 702 64.2
PGR031G1118 Punica granatum HOM05D005810 ORTHO05D007279 3.1e-251 872.1 697 63.8
Ca_09411_v3 Cicer arietinum L. HOM05D005810 ORTHO05D007279 5.2e-251 871.3 708 62.6
Sp3g03650 Schrenkiella parvula HOM05D005810 ORTHO05D007279 6.8e-251 870.9 733 61.8
BcaB04g19298 Brassica carinata HOM05D005810 ORTHO05D007279 3.2e-248 862.1 706 63.0
BcaC01g04347 Brassica carinata HOM05D005810 ORTHO05D007279 4.1e-248 861.7 733 62.1
BolC3t16404H Brassica oleracea HOM05D005810 ORTHO05D007279 5.4e-248 861.3 734 62.3
Glyma.19G243400 Glycine max HOM05D005810 ORTHO05D007279 7.8e-247 857.4 700 64.0
Thhalv10022286m.g Eutrema salsugineum HOM05D005810 ORTHO05D007279 1.1e-245 853.6 724 61.0
Aa31LG5G15210 Aethionema arabicum HOM05D005810 ORTHO05D007279 1.5e-245 853.2 779 59.3
BraA03t12559Z Brassica rapa HOM05D005810 ORTHO05D007279 1.9e-245 852.8 742 60.9
C03p41160 Brassica napus HOM05D005810 ORTHO05D007279 3.6e-244 848.6 727 61.8
SalBow8G0563 Salvia bowleyana HOM05D005810 ORTHO05D007279 4.0e-243 845.1 729 61.2
A03p33850 Brassica napus HOM05D005810 ORTHO05D007279 2.9e-241 839.0 735 60.5
vmacro14215 Vaccinium macrocarpon HOM05D005810 ORTHO05D007279 8.4e-241 837.4 797 56.6
Psat3g008040 Pisum sativum HOM05D005810 ORTHO05D007279 3.5e-239 832.0 710 61.3
EL10Ac4g09107 Beta vulgaris HOM05D005810 ORTHO05D007279 3.6e-236 822.0 696 60.3
Medtr7g114850 Medicago truncatula HOM05D005810 ORTHO05D007279 1.4e-235 820.1 711 60.8
Nitab4.5_0005059g0010 Nicotiana tabacum HOM05D005810 ORTHO05D007279 1.8e-235 819.7 703 62.2
ECA232G3974 Erigeron canadensis HOM05D005810 ORTHO05D007279 3.1e-235 818.9 715 60.1
AUR62001034 Chenopodium quinoa HOM05D005810 ORTHO05D007279 9.9e-234 813.9 777 57.0
CiPaw.07G064800 Carya illinoinensis HOM05D005810 ORTHO05D007279 2.2e-233 812.8 542 73.6
Ah.06g192190 Amaranthus hybridus HOM05D005810 ORTHO05D007279 9.3e-232 807.4 701 59.9
DCAR_006618 Daucus carota HOM05D005810 ORTHO05D007279 6.6e-230 801.2 699 60.7
Peaxi162Scf00282g00136 Petunia axillaris HOM05D005810 ORTHO05D007279 3.3e-229 798.9 692 61.8
Carub.0003s0400 Capsella rubella HOM05D005810 ORTHO05D007279 9.6e-229 797.3 646 62.8
CDE05G3473 Ceratophyllum demersum HOM05D005810 ORTHO05D007279 1.4e-227 793.5 709 59.8
HanXRQChr12g0379621 Helianthus annuus HOM05D005810 ORTHO05D007279 6.9e-227 791.2 731 59.6
CAN.G134.120 Capsicum annuum HOM05D005810 ORTHO05D007279 2.9e-225 785.8 665 63.0
AUR62004921 Chenopodium quinoa HOM05D005810 ORTHO05D007279 2.6e-218 762.7 749 55.8
Manes.08G132300 Manihot esculenta HOM05D005810 ORTHO05D007279 6.4e-217 758.1 593 66.3
Hund06958 Selenicereus undatus HOM05D005810 ORTHO05D007279 1.3e-212 743.8 701 58.2
ATR0665G477 Amborella trichopoda HOM05D005810 ORTHO05D007279 2.1e-212 743.0 723 55.7
MBI11_g10322_MAGBIO Magnolia biondii HOM05D005810 ORTHO05D007279 3.7e-212 742.3 747 55.3
Lsat_1_v5_gn_5_37760 Lactuca sativa HOM05D005810 ORTHO05D007279 1.4e-211 740.3 609 64.0
CsaV3_1G045590 Cucumis sativus L. HOM05D005810 ORTHO05D007279 3.1e-211 739.2 569 67.0
Sc09g0003830 Simmondsia chinensis HOM05D005810 ORTHO05D007279 2.7e-207 726.1 526 68.6
Manes.09G154600 Manihot esculenta HOM05D005810 ORTHO05D007279 5.7e-205 718.4 502 71.7
TPR.G6991 Trifolium pratense HOM05D005810 ORTHO05D007279 2.0e-202 709.9 571 64.4
HPP92_028013 Vanilla planifolia HOM05D005810 ORTHO05D007279 2.9e-201 706.1 703 54.6
Atru.chr2.784 Acer truncatum HOM05D005810 ORTHO05D007279 9.3e-200 701.0 445 78.4
Lj7C488G4 Lonicera japonica HOM05D005810 ORTHO05D007279 1.1e-195 687.6 724 53.9
Cc02_g31830 Coffea canephora HOM05D005810 ORTHO05D007279 4.5e-194 682.2 503 68.8
unitig_37.g12634 Utricularia gibba HOM05D005810 ORTHO05D007279 9.7e-189 664.5 708 52.3
FAN05G0700 Fragaria x ananassa HOM05D005810 ORTHO05D007279 3.1e-187 659.4 386 88.3
Zm00001eb328420 Zea mays HOM05D005810 ORTHO05D007279 7.0e-187 658.3 707 50.8
FAN14G4259 Fragaria x ananassa HOM05D005810 ORTHO05D007279 6.5e-185 651.7 386 86.8
FAN02G1150 Fragaria x ananassa HOM05D005810 ORTHO05D007279 8.5e-185 651.4 386 87.0
Pp3c18_8560 Physcomitrium patens HOM05D005810 ORTHO05D007279 2.0e-181 640.2 739 48.2
Mapoly0092s0013 Marchantia polymorpha HOM05D005810 ORTHO05D007279 9.7e-173 611.3 723 47.7
Haze_04339 Corylus avellana HOM05D005810 ORTHO05D007279 2.6e-165 586.6 393 73.3
TAR365G0727 Trochodendron aralioides HOM05D005810 ORTHO05D007279 5.0e-161 572.4 501 61.9
Eucgr.B02108 Eucalyptus grandis HOM05D005810 ORTHO05D007279 1.4e-155 554.3 504 58.7
SMO351G0210 Selaginella moellendorffii HOM05D005810 ORTHO05D007279 2.5e-152 543.5 726 43.0
Solyc01g097600.2 Solanum lycopersicum HOM05D005810 ORTHO05D007279 4.6e-138 496.1 349 69.9
Sopen01g041230 Solanum pennellii HOM05D005810 ORTHO05D007279 1.7e-137 494.2 349 69.6
Oeu060673.3 Olea europaea HOM05D005810 ORTHO05D007279 5.8e-133 479.2 796 41.0
Zm00001eb352870 Zea mays HOM05D005810 ORTHO05D007279 2.2e-132 477.2 415 59.3
Os05g0509300 Oryza sativa ssp. japonica HOM05D005810 ORTHO05D007279 1.6e-119 434.5 366 60.4
CBR_g36821 Chara braunii HOM05D005810 ORTHO05D007279 9.0e-118 428.7 810 35.7
MCO09G788 Micromonas commoda HOM05D005810 ORTHO05D007279 5.4e-115 419.5 766 35.5
Dinv13659 Davidia involucrata HOM05D005810 ORTHO05D007279 1.1e-112 411.8 312 66.3
SMO364G0521 Selaginella moellendorffii HOM05D005810 ORTHO05D007279 3.8e-108 396.7 717 37.0
Dinv13660 Davidia involucrata HOM05D005810 ORTHO05D007279 4.8e-103 379.8 316 63.3
PRCOL_00005025 Prasinoderma coloniale HOM05D005810 ORTHO05D007279 1.9e-96 357.8 742 34.5
AagrBONN_evm.TU.Sc2ySwM_362.2883 Anthoceros agrestis HOM05D005810 ORTHO05D007279 4.3e-96 356.7 348 53.4
Os01g0773000 Oryza sativa ssp. japonica HOM05D005810 ORTHO05D007279 1.6e-90 338.2 318 56.9
CsaV3_UNG004080 Cucumis sativus L. HOM05D005810 ORTHO05D007279 2.2e-84 317.8 292 57.5
Haze_04340 Corylus avellana HOM05D005810 ORTHO05D007279 4.1e-78 297.0 264 62.1
Nitab4.5_0005729g0080 Nicotiana tabacum HOM05D005810 ORTHO05D007279 2.6e-69 267.7 206 67.5
Nitab4.5_0005729g0060 Nicotiana tabacum HOM05D005810 ORTHO05D007279 1.9e-67 261.5 193 66.3
SGA_v2.0_scaffold92G28303 Striga asiatica HOM05D005810 ORTHO05D007279 5.2e-65 253.4 192 64.1
AagrBONN_evm.TU.Sc2ySwM_362.2882 Anthoceros agrestis HOM05D005810 ORTHO05D007279 1.1e-64 252.3 328 46.0
Cre01.g007651 Chlamydomonas reinhardtii HOM05D005810 ORTHO05D007279 4.4e-64 250.4 658 30.2
Zm00001eb281050 Zea mays HOM05D005810 ORTHO05D007279 2.0e-61 241.5 167 71.3
FAN09G1409 Fragaria x ananassa HOM05D005810 ORTHO05D007279 3.5e-61 240.7 156 79.5
Zm00001eb054900 Zea mays HOM05D005810 ORTHO05D007279 3.2e-59 234.2 178 68.0
Nitab4.5_0005729g0070 Nicotiana tabacum HOM05D005810 ORTHO05D007279 1.2e-58 232.3 269 51.3
Atru.chr2.785 Acer truncatum HOM05D005810 ORTHO05D007279 2.7e-50 204.5 154 66.9
Cc02_g31840 Coffea canephora HOM05D005810 ORTHO05D007279 5.2e-49 200.3 202 56.9
HPP92_018612 Vanilla planifolia HOM05D005810 ORTHO05D007279 6.8e-49 199.9 180 57.8
TPR.G21485 Trifolium pratense HOM05D005810 ORTHO05D007279 2.6e-48 198.0 168 59.5
SHI07783 Sapria himalayana HOM05D000023 ORTHO05D000014 2.5e-35 154.8 130 60.0
ClCG06G009160 Citrullus lanatus HOM05D005810 ORTHO05D007279 1.5e-32 145.6 153 51.6
CsaV3_UNG004060 Cucumis sativus L. HOM05D005810 ORTHO05D007279 1.4e-30 139.0 150 52.7
Sopen01g041220 Solanum pennellii HOM05D005810 ORTHO05D007279 3.0e-28 131.3 141 55.3
Hma1.2p1_0083F.1_g042850 Hydrangea macrophylla HOM05D005810 ORTHO05D007279 5.6e-27 127.1 140 51.4
CsaV3_1G045610 Cucumis sativus L. HOM05D005810 ORTHO05D007279 1.4e-25 122.5 141 49.6
SHI07786 Sapria himalayana HOM05D005810 ORTHO05D007279 2.4e-14 85.1 61 67.2
MBI11_g02497_MAGBIO Magnolia biondii HOM05D005810 ORTHO05D007279 5.1e-12 77.4 81 58.0
Mapoly0081s0042 Marchantia polymorpha HOM05D005810 ORTHO05D007279 1.6e-10 72.4 51 62.7
CiPaw.07G064900 Carya illinoinensis HOM05D005810 ORTHO05D007279 6.2e-10 70.5 37 97.3
Mapoly0027s0098 Marchantia polymorpha HOM05D005810 ORTHO05D007279 6.2e-10 70.5 76 48.7


User provided reference genes

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