Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0175521 Rosa chinensis HOM05D005515 ORTHO05D006620 4.3e-33 144.1 72 100.0
MD00G1139400 Malus domestica HOM05D005515 ORTHO05D006620 8.1e-32 139.8 72 94.4
CiPaw.04G036400 Carya illinoinensis HOM05D005515 ORTHO05D006620 1.1e-31 139.4 72 93.1
QL02p071462 Quercus lobata HOM05D005515 ORTHO05D006620 6.9e-31 136.7 71 90.1
Medtr7g033490 Medicago truncatula HOM05D005515 ORTHO05D006620 2.6e-30 134.8 72 86.1
vmacro05955 Vaccinium macrocarpon HOM05D005515 ORTHO05D006620 2.6e-30 134.8 70 92.9
Psat3g175680 Pisum sativum HOM05D005515 ORTHO05D006620 4.5e-30 134.0 72 84.7
TPR.G38294 Trifolium pratense HOM05D005515 ORTHO05D006620 4.5e-30 134.0 72 84.7
Actinidia05921 Actinidia chinensis HOM05D005515 ORTHO05D006620 5.8e-30 133.7 69 92.8
CSS0037273 Camellia sinensis var. sinensis HOM05D005515 ORTHO05D006620 2.9e-29 131.3 70 90.0
CSS0007323 Camellia sinensis var. sinensis HOM05D005515 ORTHO05D006620 8.4e-29 129.8 70 88.6
Zm00001eb364510 Zea mays HOM05D005515 ORTHO05D006620 8.4e-29 129.8 71 84.5
Sopen02g017220 Solanum pennellii HOM05D005515 ORTHO05D006620 1.4e-28 129.0 72 84.7
AUR62017824 Chenopodium quinoa HOM05D005515 ORTHO05D006620 3.2e-28 127.9 72 86.1
Haze_14873 Corylus avellana HOM05D005515 ORTHO05D006620 4.2e-28 127.5 72 86.1
Duzib268G1731 Durio zibethinus HOM05D005515 ORTHO05D006620 7.1e-28 126.7 69 87.0
EL10Ac6g15358 Beta vulgaris HOM05D005515 ORTHO05D006620 2.7e-27 124.8 72 81.9
Gohir.A05G310700 Gossypium hirsutum HOM05D005515 ORTHO05D006620 6.0e-27 123.6 69 85.5
Gorai.009G332600 Gossypium raimondii HOM05D005515 ORTHO05D006620 3.0e-26 121.3 69 82.6
MD09G1011100 Malus domestica HOM05D005515 ORTHO05D006620 6.7e-26 120.2 72 84.7
Dinv25661 Davidia involucrata HOM05D005515 ORTHO05D006620 1.5e-25 119.0 72 84.7
Sed0013471 Sechium edule HOM05D005515 ORTHO05D006620 3.3e-25 117.9 71 80.3
FvH4_6g53480 Fragaria vesca HOM05D005515 ORTHO05D006620 2.1e-24 115.2 72 83.3
Zm00001eb143260 Zea mays HOM05D005515 ORTHO05D006620 2.8e-24 114.8 65 78.5
Ah.02g120510 Amaranthus hybridus HOM05D005515 ORTHO05D006620 1.8e-23 112.1 65 76.9
Pp3c8_2660 Physcomitrium patens HOM05D005515 ORTHO05D006620 2.4e-23 111.7 69 73.9
AagrBONN_evm.TU.Sc2ySwM_117.47 Anthoceros agrestis HOM05D005515 ORTHO05D006620 5.3e-23 110.5 69 72.5
VMungo1383G1573 Vigna mungo HOM05D005515 ORTHO05D006620 5.3e-23 110.5 120 51.7
FAN05G2195 Fragaria x ananassa HOM05D005515 ORTHO05D006620 1.2e-22 109.4 88 69.3
FAN09G0415 Fragaria x ananassa HOM05D005515 ORTHO05D006620 1.2e-22 109.4 88 69.3
FAN02G1022 Fragaria x ananassa HOM05D005515 ORTHO05D006620 5.8e-22 107.1 72 77.8
Potri.001G330400 Populus trichocarpa HOM05D005515 ORTHO05D006620 7.6e-22 106.7 71 77.5
CANSAT11G1216 Cannabis sativa HOM05D005515 ORTHO05D006620 1.3e-21 105.9 88 67.0
Lj1g0017105 Lotus japonicus HOM05D005515 ORTHO05D006620 1.3e-21 105.9 88 65.9
C09p03480 Brassica napus HOM05D005515 ORTHO05D006620 2.2e-21 105.1 72 66.7
Sc07g0003980 Simmondsia chinensis HOM05D005515 ORTHO05D006620 2.9e-21 104.8 88 64.8
Migut.K00729 Erythranthe guttata HOM05D005515 ORTHO05D006620 3.8e-21 104.4 71 66.2
Prupe.3G305900 Prunus persica HOM05D005515 ORTHO05D006620 3.8e-21 104.4 88 65.9
GSVIVG01033096001 Vitis vinifera HOM05D005515 ORTHO05D006620 5.0e-21 104.0 89 62.9
Gohir.A05G338800 Gossypium hirsutum HOM05D005515 ORTHO05D006620 1.1e-20 102.8 88 62.5
Lalb_Chr22g0360381 Lupinus albus HOM05D005515 ORTHO05D006620 1.4e-20 102.4 88 62.5
Aqoxy2G02223 Aquilegia oxysepala HOM05D005515 ORTHO05D006620 2.5e-20 101.7 88 62.5
Aqoxy5G03385 Aquilegia oxysepala HOM05D005515 ORTHO05D006620 2.5e-20 101.7 88 62.5
Aqoxy7G00951 Aquilegia oxysepala HOM05D005515 ORTHO05D006620 2.5e-20 101.7 88 62.5
Glyma.19G091000 Glycine max HOM05D005515 ORTHO05D006620 2.5e-20 101.7 88 63.6
Rhsim10G0006500 Rhododendron simsii HOM05D005515 ORTHO05D006620 2.5e-20 101.7 86 64.0
Gohir.D07G235400 Gossypium hirsutum HOM05D005515 ORTHO05D006620 5.5e-20 100.5 54 90.7
Gorai.001G271200 Gossypium raimondii HOM05D005515 ORTHO05D006620 5.5e-20 100.5 54 90.7
Glyma.16G056700 Glycine max HOM05D005515 ORTHO05D006620 9.3e-20 99.8 88 61.4
Phvul.001G093800 Phaseolus vulgaris HOM05D005515 ORTHO05D006620 9.3e-20 99.8 88 60.2
Potri.017G069200 Populus trichocarpa HOM05D005515 ORTHO05D006620 9.3e-20 99.8 88 60.2
HPP92_000347 Vanilla planifolia HOM05D005515 ORTHO05D006620 9.3e-20 99.8 88 60.2
Os01g0920200 Oryza sativa ssp. japonica HOM05D005515 ORTHO05D006620 1.2e-19 99.4 86 58.1
Eucgr.I01648 Eucalyptus grandis HOM05D005515 ORTHO05D006620 2.1e-19 98.6 84 63.1
Gohir.A07G228200 Gossypium hirsutum HOM05D005515 ORTHO05D006620 2.7e-19 98.2 54 88.9
Manes.15G160700 Manihot esculenta HOM05D005515 ORTHO05D006620 2.7e-19 98.2 54 88.9
MELO3C011459.2 Cucumis melo HOM05D005515 ORTHO05D006620 3.5e-19 97.8 71 69.0
HanXRQChr12g0385431 Helianthus annuus HOM05D005515 ORTHO05D006620 4.6e-19 97.4 56 83.9
TAR374G0204 Trochodendron aralioides HOM05D005515 ORTHO05D006620 7.9e-19 96.7 88 59.1
Gohir.D04G077100 Gossypium hirsutum HOM05D005515 ORTHO05D006620 1.0e-18 96.3 52 88.5
TWI36G0725 Tripterygium wilfordii HOM05D005515 ORTHO05D006620 1.0e-18 96.3 52 88.5
Atru.chr6.2567 Acer truncatum HOM05D005515 ORTHO05D006620 2.3e-18 95.1 52 86.5
Gorai.012G087000 Gossypium raimondii HOM05D005515 ORTHO05D006620 2.3e-18 95.1 52 86.5
Duzib187G1157 Durio zibethinus HOM05D005515 ORTHO05D006620 3.0e-18 94.7 52 86.5
Duzib147G1212 Durio zibethinus HOM05D005515 ORTHO05D006620 3.9e-18 94.4 52 86.5
TAR622G0361 Trochodendron aralioides HOM05D005515 ORTHO05D006620 3.9e-18 94.4 52 86.5
Dinv10962 Davidia involucrata HOM05D000504 ORTHO05D006620 5.1e-18 94.0 50 90.0
Actinidia36201 Actinidia chinensis HOM05D005515 ORTHO05D006620 8.7e-18 93.2 70 67.1
ATR1098G146 Amborella trichopoda HOM05D005515 ORTHO05D006620 8.7e-18 93.2 88 54.5
Thecc.04G035700 Theobroma cacao HOM05D005515 ORTHO05D006620 8.7e-18 93.2 51 90.2
arahy.Tifrunner.gnm1.ann1.W7YL8X Arachis hypogaea HOM05D005515 ORTHO05D006620 1.5e-17 92.4 88 58.0
arahy.Tifrunner.gnm1.ann1.Y4DWZG Arachis hypogaea HOM05D005515 ORTHO05D006620 1.5e-17 92.4 88 58.0
Cc11_g16850 Coffea canephora HOM05D005515 ORTHO05D006620 1.5e-17 92.4 52 86.5
Oeu041666.1 Olea europaea HOM05D005515 ORTHO05D006620 1.9e-17 92.0 88 56.8
Ciclev10017250m.g Citrus clementina HOM05D005515 ORTHO05D006620 2.5e-17 91.7 88 56.8
Lsat_1_v5_gn_8_147620 Lactuca sativa HOM05D005515 ORTHO05D006620 2.5e-17 91.7 52 82.7
Hund04339 Selenicereus undatus HOM05D005515 ORTHO05D006620 2.5e-17 91.7 72 69.4
SEGI_35944 Sequoiadendron giganteum HOM05D005515 ORTHO05D006620 3.3e-17 91.3 88 55.7
CsaV3_6G032220 Cucumis sativus L. HOM05D005515 ORTHO05D006620 4.3e-17 90.9 71 64.8
COL.COLO4_20393 Corchorus olitorius HOM05D005515 ORTHO05D006620 5.7e-17 90.5 46 89.1
Duzib264G0697 Durio zibethinus HOM05D005515 ORTHO05D006620 5.7e-17 90.5 52 82.7
Actinidia30652 Actinidia chinensis HOM05D005515 ORTHO05D006620 7.4e-17 90.1 46 87.0
Migut.K01462 Erythranthe guttata HOM05D005515 ORTHO05D006620 9.7e-17 89.7 54 77.8
Nitab4.5_0003376g0030 Nicotiana tabacum HOM05D005515 ORTHO05D006620 9.7e-17 89.7 48 91.7
Nitab4.5_0008640g0020 Nicotiana tabacum HOM05D005515 ORTHO05D006620 9.7e-17 89.7 48 91.7
Sabra16G0211700 Salix brachista HOM05D005515 ORTHO05D006620 9.7e-17 89.7 53 84.9
Gohir.D05G311500 Gossypium hirsutum HOM05D005515 ORTHO05D006620 1.3e-16 89.4 46 87.0
Peaxi162Scf00881g00228 Petunia axillaris HOM05D005515 ORTHO05D006620 2.8e-16 88.2 47 91.5
Manes.12G012000 Manihot esculenta HOM05D005515 ORTHO05D006620 3.7e-16 87.8 49 83.7
Atru.chr11.2315 Acer truncatum HOM05D005515 ORTHO05D006620 6.3e-16 87.0 49 83.7
PSO782G3173 Papaver somniferum HOM05D005515 ORTHO05D006620 1.1e-15 86.3 88 53.4
PGR102G1194 Punica granatum HOM05D005515 ORTHO05D006620 2.4e-15 85.1 88 52.3
Oeu006531.1 Olea europaea HOM05D005515 ORTHO05D006620 3.1e-15 84.7 48 79.2
CSS0003202 Camellia sinensis var. sinensis HOM05D005515 ORTHO05D006620 4.1e-15 84.3 40 92.5
CSS0037049 Camellia sinensis var. sinensis HOM05D005515 ORTHO05D006620 4.1e-15 84.3 40 92.5
AL5G16230 Arabidopsis lyrata HOM05D005515 ORTHO05D006620 5.3e-15 84.0 88 50.0
PSO063G5856 Papaver somniferum HOM05D005515 ORTHO05D006620 5.3e-15 84.0 88 52.3
Solyc02g068110.4 Solanum lycopersicum HOM05D005515 ORTHO05D006620 5.3e-15 84.0 47 85.1
Cre08.g370300 Chlamydomonas reinhardtii HOM05D005515 ORTHO05D006620 6.9e-15 83.6 67 52.2
Pp3c4_1860 Physcomitrium patens HOM05D005515 ORTHO05D006620 6.9e-15 83.6 84 52.4
Mapoly0005s0063 Marchantia polymorpha HOM05D005515 ORTHO05D006620 1.2e-14 82.8 88 51.1
CAN.G1300.5 Capsicum annuum HOM05D005515 ORTHO05D006620 1.5e-14 82.4 45 88.9
CARHR148320 Cardamine hirsuta HOM05D005515 ORTHO05D006620 1.5e-14 82.4 72 56.9
Haze_12412 Corylus avellana HOM05D000048 ORTHO05D000445 1.5e-14 82.4 46 89.1
SalBow2G3427 Salvia bowleyana HOM05D005515 ORTHO05D006620 2.0e-14 82.0 46 78.3
SMO367G0376 Selaginella moellendorffii HOM05D005515 ORTHO05D006620 2.0e-14 82.0 84 50.0
Haze_27757 Corylus avellana HOM05D005515 ORTHO05D006620 4.5e-14 80.9 63 52.4
Pp3c12_14240 Physcomitrium patens HOM05D005515 ORTHO05D006620 1.7e-13 79.0 82 50.0
unitig_8.g2909 Utricularia gibba HOM05D005515 ORTHO05D006620 1.7e-13 79.0 49 79.6
MSTRG.15568 Avicennia marina HOM05D005515 ORTHO05D006620 2.2e-13 78.6 46 84.8
FAN14G0031 Fragaria x ananassa HOM05D005515 ORTHO05D006620 2.2e-13 78.6 47 83.0
ClCG08G010060 Citrullus lanatus HOM05D005515 ORTHO05D006620 3.8e-13 77.8 82 51.2
THA.LOC104823981 Tarenaya hassleriana HOM05D005515 ORTHO05D006620 3.8e-13 77.8 47 72.3
PRCOL_00000741 Prasinoderma coloniale HOM05D005515 ORTHO05D006620 9.4e-12 73.2 66 47.0
BolC7t44132H Brassica oleracea HOM05D005515 ORTHO05D006620 1.6e-11 72.4 68 55.9
MSTRG.7999 Avicennia marina HOM05D005515 ORTHO05D006620 2.1e-11 72.0 47 72.3
TWI18G0205 Tripterygium wilfordii HOM05D005515 ORTHO05D006620 1.0e-10 69.7 67 50.7
Sabra17G0064300 Salix brachista HOM05D005515 ORTHO05D006620 2.0e-09 65.5 63 57.1
BcaC06g31020 Brassica carinata HOM05D005515 ORTHO05D006620 3.3e-09 64.7 48 60.4
Carub.0005s0534 Capsella rubella HOM05D005515 ORTHO05D006620 3.3e-09 64.7 41 75.6
AT3G27100 Arabidopsis thaliana HOM05D005515 ORTHO05D006620 4.3e-09 64.3 40 77.5
BcaB04g19426 Brassica carinata HOM05D005515 ORTHO05D006620 4.3e-09 64.3 72 48.6
SalBow7G1491 Salvia bowleyana HOM05D005515 ORTHO05D006620 5.7e-09 63.9 70 47.1
Thhalv10005161m.g Eutrema salsugineum HOM05D005515 ORTHO05D006620 3.7e-08 61.2 39 71.8
A09p03280 Brassica napus HOM05D005515 ORTHO05D006620 1.1e-07 59.7 40 70.0
Cfa009365 Carpinus fangiana HOM05D000048 ORTHO05D000445 1.4e-07 59.3 86 40.7
BcaC04g23917 Brassica carinata HOM05D005515 ORTHO05D006620 1.8e-07 58.9 40 70.0
BolC9t53269H Brassica oleracea HOM05D005515 ORTHO05D006620 1.8e-07 58.9 40 70.0
Sp2g16230 Schrenkiella parvula HOM05D005515 ORTHO05D006620 2.4e-07 58.5 38 71.1
BraA06t27074Z Brassica rapa HOM05D005515 ORTHO05D006620 6.9e-07 57.0 38 68.4
MCO13G114 Micromonas commoda HOM05D005515 ORTHO05D006620 1.5e-06 55.8 42 59.5
Nn3g16471 Nelumbo nucifera HOM05D005515 ORTHO05D006620 2.0e-06 55.5 28 85.7
Aa31LG2G5500 Aethionema arabicum HOM05D005515 ORTHO05D006620 3.4e-06 54.7 35 74.3
Ciclev10033394m.g Citrus clementina HOM05D005515 ORTHO05D006620 3.4e-06 54.7 27 85.2
C07p36160 Brassica napus HOM05D005515 ORTHO05D006620 5.9e-06 53.9 38 65.8


User provided reference genes

Program Settings