Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0172131 Rosa chinensis HOM05D001331 ORTHO05D001157 4.4e-49 197.6 97 100.0
RcHm_v2.0_Chr2g0174831 Rosa chinensis HOM05D001331 ORTHO05D001157 4.2e-31 137.9 80 86.2
FAN09G0670 Fragaria x ananassa HOM05D001331 ORTHO05D001157 1.1e-28 129.8 80 81.2
FvH4_6g53050 Fragaria vesca HOM05D001331 ORTHO05D001157 2.5e-28 128.6 80 80.0
FAN05G4290 Fragaria x ananassa HOM05D001331 ORTHO05D001157 2.5e-28 128.6 80 78.8
RcHm_v2.0_Chr2g0172041 Rosa chinensis HOM05D001331 ORTHO05D001157 1.2e-25 119.8 67 88.1
RcHm_v2.0_Chr2g0174821 Rosa chinensis HOM05D001331 ORTHO05D001157 6.4e-24 114.0 80 67.5
MD17G1015200 Malus domestica HOM05D001331 ORTHO05D001157 1.8e-21 105.9 80 63.8
Prupe.3G302600 Prunus persica HOM05D001331 ORTHO05D001157 1.8e-21 105.9 82 63.4
FvH4_6g53040 Fragaria vesca HOM05D001331 ORTHO05D001157 5.1e-21 104.4 80 63.8
Atru.chr6.2516 Acer truncatum HOM05D003058 ORTHO05D001157 1.9e-15 85.9 81 54.3
Dinv33363 Davidia involucrata HOM05D001331 ORTHO05D001157 6.0e-14 80.9 91 50.5
CSS0043172 Camellia sinensis var. sinensis HOM05D001331 ORTHO05D001157 1.8e-13 79.3 92 47.8
TAR622G0469 Trochodendron aralioides HOM05D001331 ORTHO05D001157 3.0e-13 78.6 85 54.1
Cpa.g.sc130.6 Carica papaya HOM05D023558 ORTHO05D001157 5.1e-13 77.8 83 50.6
QL02p072043 Quercus lobata HOM05D001331 ORTHO05D001157 6.7e-13 77.4 98 45.9
Dinv25676 Davidia involucrata HOM05D001331 ORTHO05D001157 8.7e-13 77.0 94 47.9
CiPaw.03G052700 Carya illinoinensis HOM05D001331 ORTHO05D001157 1.1e-12 76.6 87 49.4
Ciclev10014314m.g Citrus clementina HOM05D001331 ORTHO05D001157 1.9e-12 75.9 83 49.4
Hma1.2p1_1219F.1_g267890 Hydrangea macrophylla HOM05D001331 ORTHO05D001157 1.9e-12 75.9 88 50.0
Nn4g22389 Nelumbo nucifera HOM05D001331 ORTHO05D001157 1.3e-11 73.2 72 58.3
CANSAT64G1743 Cannabis sativa HOM05D001331 ORTHO05D001157 2.8e-11 72.0 77 50.6
MD09G1015200 Malus domestica HOM05D001331 ORTHO05D001157 6.3e-11 70.9 58 60.3
Migut.H00012 Erythranthe guttata HOM05D001331 ORTHO05D001157 1.1e-10 70.1 92 42.4
Potri.017G067400 Populus trichocarpa HOM05D001331 ORTHO05D001157 1.1e-10 70.1 74 51.4
Glyma.19G087000 Glycine max HOM05D001331 ORTHO05D001157 1.4e-10 69.7 77 46.8
CARHR213690 Cardamine hirsuta HOM05D001331 ORTHO05D001157 2.4e-10 68.9 84 46.4
Psat3g172880 Pisum sativum HOM05D001331 ORTHO05D001157 2.4e-10 68.9 72 51.4
ClCG11G006940 Citrullus lanatus HOM05D001331 ORTHO05D001157 3.1e-10 68.6 77 50.6
Thecc.08G160900 Theobroma cacao HOM05D001331 ORTHO05D001157 4.1e-10 68.2 71 53.5
GSVIVG01001820001 Vitis vinifera HOM05D001331 ORTHO05D001157 4.1e-10 68.2 100 40.0
Medtr7g031420 Medicago truncatula HOM05D001331 ORTHO05D001157 5.3e-10 67.8 80 43.8
Actinidia30892 Actinidia chinensis HOM05D001331 ORTHO05D001157 6.9e-10 67.4 88 42.0
Aa31LG9G820 Aethionema arabicum HOM05D001331 ORTHO05D001157 1.2e-09 66.6 83 49.4
MELO3C008211.2 Cucumis melo HOM05D001331 ORTHO05D001157 1.2e-09 66.6 80 48.8
Lj1g0014933 Lotus japonicus HOM05D001331 ORTHO05D001157 1.2e-09 66.6 90 42.2
Manes.15G158100 Manihot esculenta HOM05D001331 ORTHO05D001157 1.2e-09 66.6 83 45.8
Hma1.2p1_0571F.1_g180730 Hydrangea macrophylla HOM05D001331 ORTHO05D001157 1.5e-09 66.2 81 46.9
MSTRG.3092 Avicennia marina HOM05D001331 ORTHO05D001157 2.0e-09 65.9 97 40.2
CSS0001891 Camellia sinensis var. sinensis HOM05D005595 ORTHO05D006962 2.6e-09 65.5 92 42.4
Aqoxy5G03473 Aquilegia oxysepala HOM05D001331 ORTHO05D001157 3.4e-09 65.1 82 46.3
Thhalv10027644m.g Eutrema salsugineum HOM05D001331 ORTHO05D001157 3.4e-09 65.1 67 50.7
Sp7g01090 Schrenkiella parvula HOM05D001331 ORTHO05D001157 3.4e-09 65.1 91 40.7
AT5G40840 Arabidopsis thaliana HOM05D001331 ORTHO05D001157 4.5e-09 64.7 67 52.2
Glyma.16G060000 Glycine max HOM05D001331 ORTHO05D001157 4.5e-09 64.7 68 48.5
Nitab4.5_0001031g0030 Nicotiana tabacum HOM05D001331 ORTHO05D001157 4.5e-09 64.7 84 42.9
AL7G48780 Arabidopsis lyrata HOM05D001331 ORTHO05D001157 5.9e-09 64.3 67 50.7
C06p19440 Brassica napus HOM05D001331 ORTHO05D001157 5.9e-09 64.3 84 42.9
CsaV3_6G001130 Cucumis sativus L. HOM05D001331 ORTHO05D001157 7.6e-09 63.9 78 48.7
A04p13890 Brassica napus HOM05D001331 ORTHO05D001157 1.3e-08 63.2 67 50.7
Duzib093G1964 Durio zibethinus HOM05D001331 ORTHO05D001157 1.3e-08 63.2 77 49.4
BcaC02g09000 Brassica carinata HOM05D001331 ORTHO05D001157 1.7e-08 62.8 84 41.7
Sed0009999 Sechium edule HOM05D001331 ORTHO05D001157 2.2e-08 62.4 78 46.2
TWI12G0610 Tripterygium wilfordii HOM05D001331 ORTHO05D001157 2.2e-08 62.4 90 41.1
arahy.Tifrunner.gnm1.ann1.ZV22RA Arachis hypogaea HOM05D001331 ORTHO05D001157 2.9e-08 62.0 77 45.5
BcaC08g44492 Brassica carinata HOM05D001331 ORTHO05D001157 2.9e-08 62.0 67 49.3
BraA04t17054Z Brassica rapa HOM05D001331 ORTHO05D001157 2.9e-08 62.0 67 50.7
Gohir.A05G246800 Gossypium hirsutum HOM05D001331 ORTHO05D001157 2.9e-08 62.0 75 45.3
Gorai.009G259300 Gossypium raimondii HOM05D001331 ORTHO05D001157 2.9e-08 62.0 75 45.3
Oeu013649.1 Olea europaea HOM05D001331 ORTHO05D001157 2.9e-08 62.0 91 39.6
Hund14414 Selenicereus undatus HOM05D001331 ORTHO05D001157 2.9e-08 62.0 67 49.3
BcaB06g27563 Brassica carinata HOM05D001331 ORTHO05D001157 3.8e-08 61.6 67 49.3
C04p47650 Brassica napus HOM05D001331 ORTHO05D001157 3.8e-08 61.6 84 41.7
FAN14G1168 Fragaria x ananassa HOM05D001331 ORTHO05D001157 5.0e-08 61.2 75 48.0
PGSC0003DMG401020221 Solanum tuberosum HOM05D001331 ORTHO05D001157 5.0e-08 61.2 84 42.9
vmacro00334 Vaccinium macrocarpon HOM05D001331 ORTHO05D001157 5.0e-08 61.2 91 45.1
SEGI_17466 Sequoiadendron giganteum HOM05D001331 ORTHO05D001157 6.5e-08 60.8 70 41.4
BolC4t26366H Brassica oleracea HOM05D001331 ORTHO05D001157 8.5e-08 60.5 67 47.8
Carub.0007s3466 Capsella rubella HOM05D001331 ORTHO05D001157 1.1e-07 60.1 66 48.5
Hund11264 Selenicereus undatus HOM05D001331 ORTHO05D001157 1.4e-07 59.7 98 37.8
Ah.12g054720 Amaranthus hybridus HOM05D001331 ORTHO05D001157 1.9e-07 59.3 66 45.5
Haze_14837 Corylus avellana HOM05D001331 ORTHO05D001157 2.5e-07 58.9 85 41.2
Gohir.D05G248300 Gossypium hirsutum HOM05D001331 ORTHO05D001157 2.5e-07 58.9 76 46.1
Sabra17G0062300 Salix brachista HOM05D001331 ORTHO05D001157 2.5e-07 58.9 60 55.0
Carub.0006s3326 Capsella rubella HOM05D001331 ORTHO05D001157 4.2e-07 58.2 81 40.7
ECA232G4540 Erigeron canadensis HOM05D001331 ORTHO05D001157 4.2e-07 58.2 74 43.2
Lj1g0022047 Lotus japonicus HOM05D001331 ORTHO05D001157 5.5e-07 57.8 78 37.2
PGR083G0547 Punica granatum HOM05D001331 ORTHO05D001157 5.5e-07 57.8 76 40.8
TAR369G1001 Trochodendron aralioides HOM05D001331 ORTHO05D001157 5.5e-07 57.8 83 37.3
COL.COLO4_13736 Corchorus olitorius HOM05D001331 ORTHO05D001157 7.2e-07 57.4 64 50.0
Cc02_g27380 Coffea canephora HOM05D001331 ORTHO05D001157 9.3e-07 57.0 73 42.5
EL10Ac9g21830 Beta vulgaris HOM05D001331 ORTHO05D001157 1.2e-06 56.6 69 43.5
Cc07_g00590 Coffea canephora HOM05D001331 ORTHO05D001157 1.2e-06 56.6 79 40.5
DCAR_021766 Daucus carota HOM05D001331 ORTHO05D001157 1.2e-06 56.6 69 47.8
Sopen02g038580 Solanum pennellii HOM05D001331 ORTHO05D001157 1.2e-06 56.6 84 40.5
EL10Ac5g12161 Beta vulgaris HOM05D001331 ORTHO05D001157 1.6e-06 56.2 77 42.9
Psat3g101880 Pisum sativum HOM05D001331 ORTHO05D001157 1.6e-06 56.2 83 33.7
TAR629G1584 Trochodendron aralioides HOM05D001331 ORTHO05D001157 2.1e-06 55.8 67 52.2
HanXRQChr09g0256031 Helianthus annuus HOM05D001331 ORTHO05D001157 2.7e-06 55.5 65 44.6
TAR623G0247 Trochodendron aralioides HOM05D001331 ORTHO05D001157 2.7e-06 55.5 73 41.1
CAN.G473.78 Capsicum annuum HOM05D001331 ORTHO05D001157 3.6e-06 55.1 82 41.5
Haze_03244 Corylus avellana HOM05D001331 ORTHO05D001157 3.6e-06 55.1 70 38.6
Glyma.09G247600 Glycine max HOM05D001331 ORTHO05D001157 3.6e-06 55.1 75 38.7
MD07G1005000 Malus domestica HOM05D001331 ORTHO05D001157 3.6e-06 55.1 70 41.4
Glyma.18G245000 Glycine max HOM05D001331 ORTHO05D001157 4.6e-06 54.7 75 38.7
MBI04_g27129_MAGBIO Magnolia biondii HOM05D001331 ORTHO05D001157 4.6e-06 54.7 71 38.0
Medtr7g080575 Medicago truncatula HOM05D001331 ORTHO05D001157 4.6e-06 54.7 79 36.7
Phvul.008G051500 Phaseolus vulgaris HOM05D001331 ORTHO05D001157 4.6e-06 54.7 70 41.4
VMungo1383G3003 Vigna mungo HOM05D001331 ORTHO05D001157 4.6e-06 54.7 89 36.0
Solyc02g093930.4 Solanum lycopersicum HOM05D001331 ORTHO05D001157 6.1e-06 54.3 84 39.3
SGA_v2.0_scaffold18G08222 Striga asiatica HOM05D001331 ORTHO05D001157 6.1e-06 54.3 65 41.5
QL04p004796 Quercus lobata HOM05D001331 ORTHO05D001157 7.9e-06 53.9 70 40.0
Rhsim08G0045100 Rhododendron simsii HOM05D001331 ORTHO05D001157 7.9e-06 53.9 91 39.6
VMungo1383G1445 Vigna mungo HOM05D001331 ORTHO05D001157 7.9e-06 53.9 70 41.4


User provided reference genes

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