Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0172121 Rosa chinensis HOM05D001331 ORTHO05D001157 1.3e-97 359.8 183 100.0
RcHm_v2.0_Chr2g0174831 Rosa chinensis HOM05D001331 ORTHO05D001157 2.2e-57 226.1 181 66.3
FAN05G4290 Fragaria x ananassa HOM05D001331 ORTHO05D001157 5.6e-53 211.5 182 62.1
FvH4_6g53050 Fragaria vesca HOM05D001331 ORTHO05D001157 3.0e-46 189.1 231 49.4
FAN09G0670 Fragaria x ananassa HOM05D001331 ORTHO05D001157 3.0e-46 189.1 231 49.4
Prupe.3G302600 Prunus persica HOM05D001331 ORTHO05D001157 8.1e-36 154.5 176 48.9
MD09G1015100 Malus domestica HOM05D001331 ORTHO05D001157 1.5e-29 133.7 173 47.4
MD17G1015200 Malus domestica HOM05D001331 ORTHO05D001157 1.5e-29 133.7 185 45.9
Dinv25676 Davidia involucrata HOM05D001331 ORTHO05D001157 2.6e-26 122.9 185 38.9
QL02p072043 Quercus lobata HOM05D001331 ORTHO05D001157 5.5e-24 115.2 121 50.4
Manes.15G158100 Manihot esculenta HOM05D001331 ORTHO05D001157 4.6e-23 112.1 111 47.7
Ciclev10014314m.g Citrus clementina HOM05D001331 ORTHO05D001157 6.0e-23 111.7 101 53.5
CiPaw.03G052700 Carya illinoinensis HOM05D001331 ORTHO05D001157 7.9e-23 111.3 142 45.8
Rhsim08G0045100 Rhododendron simsii HOM05D001331 ORTHO05D001157 5.1e-22 108.6 122 42.6
Dinv33363 Davidia involucrata HOM05D001331 ORTHO05D001157 5.6e-21 105.1 178 34.3
Actinidia30892 Actinidia chinensis HOM05D001331 ORTHO05D001157 6.2e-20 101.7 134 39.6
CSS0001891 Camellia sinensis var. sinensis HOM05D005595 ORTHO05D006962 1.4e-19 100.5 129 41.9
CSS0043172 Camellia sinensis var. sinensis HOM05D001331 ORTHO05D001157 1.4e-19 100.5 129 41.9
FvH4_6g53040 Fragaria vesca HOM05D001331 ORTHO05D001157 5.3e-19 98.6 117 51.3
RcHm_v2.0_Chr2g0174821 Rosa chinensis HOM05D001331 ORTHO05D001157 9.0e-19 97.8 128 46.9
TAR629G1584 Trochodendron aralioides HOM05D001331 ORTHO05D001157 9.0e-19 97.8 108 45.4
Nn4g22389 Nelumbo nucifera HOM05D001331 ORTHO05D001157 2.0e-18 96.7 94 48.9
Haze_14837 Corylus avellana HOM05D001331 ORTHO05D001157 3.4e-18 95.9 109 46.8
Potri.017G067400 Populus trichocarpa HOM05D001331 ORTHO05D001157 5.8e-18 95.1 109 43.1
RcHm_v2.0_Chr2g0173841 Rosa chinensis HOM05D001331 ORTHO05D001157 5.8e-18 95.1 66 75.8
TAR622G0469 Trochodendron aralioides HOM05D001331 ORTHO05D001157 5.8e-18 95.1 101 45.5
PGR083G0547 Punica granatum HOM05D001331 ORTHO05D001157 1.0e-17 94.4 136 43.4
Sed0009999 Sechium edule HOM05D001331 ORTHO05D001157 1.0e-17 94.4 100 44.0
PGSC0003DMG401020221 Solanum tuberosum HOM05D001331 ORTHO05D001157 1.3e-17 94.0 105 43.8
Solyc02g093930.4 Solanum lycopersicum HOM05D001331 ORTHO05D001157 6.5e-17 91.7 105 41.9
Sopen02g038580 Solanum pennellii HOM05D001331 ORTHO05D001157 1.1e-16 90.9 105 41.9
CsaV3_6G001130 Cucumis sativus L. HOM05D001331 ORTHO05D001157 1.4e-16 90.5 102 43.1
Sabra17G0062300 Salix brachista HOM05D001331 ORTHO05D001157 2.5e-16 89.7 119 41.2
ClCG11G006940 Citrullus lanatus HOM05D001331 ORTHO05D001157 7.1e-16 88.2 85 50.6
vmacro00334 Vaccinium macrocarpon HOM05D001331 ORTHO05D001157 9.3e-16 87.8 127 37.0
Cc07_g00590 Coffea canephora HOM05D001331 ORTHO05D001157 2.1e-15 86.7 93 43.0
CAN.G473.78 Capsicum annuum HOM05D001331 ORTHO05D001157 3.5e-15 85.9 104 41.3
Duzib093G1964 Durio zibethinus HOM05D001331 ORTHO05D001157 3.5e-15 85.9 99 45.5
Hma1.2p1_1219F.1_g267890 Hydrangea macrophylla HOM05D001331 ORTHO05D001157 4.6e-15 85.5 124 40.3
TWI12G0610 Tripterygium wilfordii HOM05D001331 ORTHO05D001157 6.0e-15 85.1 121 43.0
MBI11_g38640_MAGBIO Magnolia biondii HOM05D001331 ORTHO05D001157 1.8e-14 83.6 126 40.5
CDE02G0478 Ceratophyllum demersum HOM05D002893 ORTHO05D003387 2.3e-14 83.2 117 39.3
AT5G40840 Arabidopsis thaliana HOM05D001331 ORTHO05D001157 3.0e-14 82.8 125 36.8
GSVIVG01001820001 Vitis vinifera HOM05D001331 ORTHO05D001157 3.0e-14 82.8 104 42.3
AL7G48780 Arabidopsis lyrata HOM05D001331 ORTHO05D001157 5.1e-14 82.0 93 44.1
Gohir.A05G246800 Gossypium hirsutum HOM05D001331 ORTHO05D001157 5.1e-14 82.0 112 42.9
Atru.chr6.2516 Acer truncatum HOM05D003058 ORTHO05D001157 8.7e-14 81.3 86 45.3
Sc07g0004190 Simmondsia chinensis HOM05D001331 ORTHO05D001157 8.7e-14 81.3 106 38.7
Gohir.D05G248300 Gossypium hirsutum HOM05D001331 ORTHO05D001157 1.5e-13 80.5 112 42.9
Gorai.009G259300 Gossypium raimondii HOM05D001331 ORTHO05D001157 1.5e-13 80.5 112 42.9
Oeu013649.1 Olea europaea HOM05D001331 ORTHO05D001157 2.5e-13 79.7 99 37.4
Thecc.08G160900 Theobroma cacao HOM05D001331 ORTHO05D001157 3.3e-13 79.3 120 39.2
PSO063G1524 Papaver somniferum HOM05D001331 ORTHO05D001157 4.3e-13 79.0 82 46.3
PSO782G2151 Papaver somniferum HOM05D001331 ORTHO05D001157 4.3e-13 79.0 82 46.3
COL.COLO4_13736 Corchorus olitorius HOM05D001331 ORTHO05D001157 4.8e-12 75.5 103 40.8
Nitab4.5_0001031g0030 Nicotiana tabacum HOM05D001331 ORTHO05D001157 4.8e-12 75.5 114 38.6
CANSAT64G1743 Cannabis sativa HOM05D001331 ORTHO05D001157 1.1e-11 74.3 123 35.0
Eucgr.J02310 Eucalyptus grandis HOM05D001331 ORTHO05D001157 1.4e-11 73.9 93 41.9
Thhalv10027644m.g Eutrema salsugineum HOM05D001331 ORTHO05D001157 2.4e-11 73.2 93 38.7
Peaxi162Scf00420g00454 Petunia axillaris HOM05D001331 ORTHO05D001157 2.4e-11 73.2 100 38.0
AUR62007258 Chenopodium quinoa HOM05D001331 ORTHO05D001157 3.1e-11 72.8 86 44.2
Carub.0007s3466 Capsella rubella HOM05D001331 ORTHO05D001157 6.9e-11 71.6 82 40.2
CARHR213690 Cardamine hirsuta HOM05D001331 ORTHO05D001157 1.2e-10 70.9 93 35.5
arahy.Tifrunner.gnm1.ann1.ZV22RA Arachis hypogaea HOM05D001331 ORTHO05D001157 5.9e-10 68.6 93 37.6
Migut.H00012 Erythranthe guttata HOM05D001331 ORTHO05D001157 7.7e-10 68.2 108 35.2
Sp7g01090 Schrenkiella parvula HOM05D001331 ORTHO05D001157 7.7e-10 68.2 108 34.3
BraA04t17054Z Brassica rapa HOM05D001331 ORTHO05D001157 1.0e-09 67.8 82 39.0
EL10Ac5g12161 Beta vulgaris HOM05D001331 ORTHO05D001157 1.3e-09 67.4 79 44.3
ECA232G4540 Erigeron canadensis HOM05D001331 ORTHO05D001157 1.3e-09 67.4 110 38.2
ATR0686G087 Amborella trichopoda HOM05D001331 ORTHO05D001157 5.0e-09 65.5 95 33.7
BcaB06g27563 Brassica carinata HOM05D001331 ORTHO05D001157 8.5e-09 64.7 93 35.5
BcaC02g09000 Brassica carinata HOM05D001331 ORTHO05D001157 8.5e-09 64.7 82 36.6
C04p47650 Brassica napus HOM05D001331 ORTHO05D001157 8.5e-09 64.7 82 36.6
BolC4t26366H Brassica oleracea HOM05D001331 ORTHO05D001157 8.5e-09 64.7 114 32.5
Nitab4.5_0002887g0130 Nicotiana tabacum HOM05D001331 ORTHO05D001157 8.5e-09 64.7 75 42.7
A04p13890 Brassica napus HOM05D001331 ORTHO05D001157 1.1e-08 64.3 82 36.6
Hund14414 Selenicereus undatus HOM05D001331 ORTHO05D001157 1.1e-08 64.3 115 35.7
Hund11264 Selenicereus undatus HOM05D001331 ORTHO05D001157 1.9e-08 63.5 77 39.0
Duzib268G0738 Durio zibethinus HOM05D001331 ORTHO05D001157 4.2e-08 62.4 119 31.9
HPP92_009955 Vanilla planifolia HOM05D001331 ORTHO05D001157 4.2e-08 62.4 82 34.1
MSTRG.3092 Avicennia marina HOM05D001331 ORTHO05D001157 5.5e-08 62.0 105 32.4
BcaC08g44492 Brassica carinata HOM05D001331 ORTHO05D001157 7.2e-08 61.6 125 31.2
C06p19440 Brassica napus HOM05D001331 ORTHO05D001157 1.6e-07 60.5 92 33.7
BolC6t37139H Brassica oleracea HOM05D001331 ORTHO05D001157 2.1e-07 60.1 126 30.2
Os04g0488100 Oryza sativa ssp. japonica HOM05D001331 ORTHO05D001157 2.1e-07 60.1 121 32.2
BcaB02g07925 Brassica carinata HOM05D001331 ORTHO05D001157 2.7e-07 59.7 93 32.3
Aa31LG9G820 Aethionema arabicum HOM05D001331 ORTHO05D001157 6.1e-07 58.5 58 37.9
CiPaw.11G071700 Carya illinoinensis HOM05D001331 ORTHO05D001157 7.9e-07 58.2 132 36.4
Manes.03G096000 Manihot esculenta HOM05D001331 ORTHO05D001157 1.4e-06 57.4 114 29.8
Thecc.01G414900 Theobroma cacao HOM05D001331 ORTHO05D001157 2.3e-06 56.6 116 32.8
Gorai.004G035600 Gossypium raimondii HOM05D001331 ORTHO05D001157 3.0e-06 56.2 117 29.9
HanXRQChr09g0256031 Helianthus annuus HOM05D001331 ORTHO05D001157 3.0e-06 56.2 84 36.9
Gohir.D08G037601 Gossypium hirsutum HOM05D001331 ORTHO05D001157 3.9e-06 55.8 117 29.9
MBI01_g15754_MAGBIO Magnolia biondii HOM05D001331 ORTHO05D001157 3.9e-06 55.8 89 33.7
Gohir.A08G026800 Gossypium hirsutum HOM05D001331 ORTHO05D001157 6.7e-06 55.1 65 40.0
Prupe.2G007300 Prunus persica HOM05D001331 ORTHO05D001157 6.7e-06 55.1 122 31.1


User provided reference genes

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