Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0172041 Rosa chinensis HOM05D001331 ORTHO05D001157 2.2e-69 265.4 125 100.0
RcHm_v2.0_Chr2g0174831 Rosa chinensis HOM05D001331 ORTHO05D001157 1.5e-36 156.4 104 76.0
FvH4_6g53050 Fragaria vesca HOM05D001331 ORTHO05D001157 1.8e-31 139.4 102 69.6
FAN05G4290 Fragaria x ananassa HOM05D001331 ORTHO05D001157 2.4e-31 139.0 96 67.7
FAN09G0670 Fragaria x ananassa HOM05D001331 ORTHO05D001157 5.9e-30 134.4 93 72.0
RcHm_v2.0_Chr2g0172131 Rosa chinensis HOM05D001331 ORTHO05D001157 1.2e-25 120.2 67 88.1
Prupe.3G302600 Prunus persica HOM05D001331 ORTHO05D001157 8.3e-24 114.0 96 58.3
MD17G1015200 Malus domestica HOM05D001331 ORTHO05D001157 1.9e-23 112.8 89 64.0
RcHm_v2.0_Chr2g0174821 Rosa chinensis HOM05D001331 ORTHO05D001157 1.9e-23 112.8 94 58.5
FvH4_6g53040 Fragaria vesca HOM05D001331 ORTHO05D001157 1.1e-20 103.6 83 59.0
MD09G1015200 Malus domestica HOM05D001331 ORTHO05D001157 6.8e-18 94.4 87 56.3
CiPaw.03G052700 Carya illinoinensis HOM05D001331 ORTHO05D001157 2.7e-14 82.4 85 50.6
Potri.017G067400 Populus trichocarpa HOM05D001331 ORTHO05D001157 2.7e-14 82.4 80 50.0
TAR622G0469 Trochodendron aralioides HOM05D001331 ORTHO05D001157 5.1e-13 78.2 86 50.0
Cpa.g.sc130.6 Carica papaya HOM05D023558 ORTHO05D001157 8.6e-13 77.4 84 47.6
FAN14G1168 Fragaria x ananassa HOM05D001331 ORTHO05D001157 1.9e-12 76.3 59 61.0
Ciclev10014314m.g Citrus clementina HOM05D001331 ORTHO05D001157 4.3e-12 75.1 101 41.6
Atru.chr6.2516 Acer truncatum HOM05D003058 ORTHO05D001157 5.6e-12 74.7 72 52.8
CsaV3_6G001130 Cucumis sativus L. HOM05D001331 ORTHO05D001157 7.3e-12 74.3 98 42.9
Manes.15G158100 Manihot esculenta HOM05D001331 ORTHO05D001157 7.3e-12 74.3 87 46.0
CANSAT64G1743 Cannabis sativa HOM05D001331 ORTHO05D001157 2.1e-11 72.8 84 46.4
Hma1.2p1_1219F.1_g267890 Hydrangea macrophylla HOM05D001331 ORTHO05D001157 2.1e-11 72.8 81 48.1
MELO3C008211.2 Cucumis melo HOM05D001331 ORTHO05D001157 2.8e-11 72.4 101 40.6
ClCG11G006940 Citrullus lanatus HOM05D001331 ORTHO05D001157 3.6e-11 72.0 85 45.9
Haze_14837 Corylus avellana HOM05D001331 ORTHO05D001157 3.6e-11 72.0 71 50.7
Gohir.A05G246800 Gossypium hirsutum HOM05D001331 ORTHO05D001157 4.7e-11 71.6 80 45.0
Psat3g172880 Pisum sativum HOM05D001331 ORTHO05D001157 6.2e-11 71.2 88 43.2
Sed0009999 Sechium edule HOM05D001331 ORTHO05D001157 8.1e-11 70.9 96 41.7
Thecc.08G160900 Theobroma cacao HOM05D001331 ORTHO05D001157 8.1e-11 70.9 80 46.2
Gorai.009G259300 Gossypium raimondii HOM05D001331 ORTHO05D001157 1.4e-10 70.1 80 45.0
Dinv33363 Davidia involucrata HOM05D001331 ORTHO05D001157 1.8e-10 69.7 74 52.7
Glyma.16G060000 Glycine max HOM05D001331 ORTHO05D001157 1.8e-10 69.7 81 42.0
Glyma.19G087000 Glycine max HOM05D001331 ORTHO05D001157 1.8e-10 69.7 85 42.4
CSS0043172 Camellia sinensis var. sinensis HOM05D001331 ORTHO05D001157 3.1e-10 68.9 82 46.3
CARHR213690 Cardamine hirsuta HOM05D001331 ORTHO05D001157 3.1e-10 68.9 75 46.7
AL7G48780 Arabidopsis lyrata HOM05D001331 ORTHO05D001157 5.2e-10 68.2 77 44.2
AT5G40840 Arabidopsis thaliana HOM05D001331 ORTHO05D001157 6.8e-10 67.8 78 43.6
arahy.Tifrunner.gnm1.ann1.ZV22RA Arachis hypogaea HOM05D001331 ORTHO05D001157 6.8e-10 67.8 105 39.0
ECA232G4540 Erigeron canadensis HOM05D001331 ORTHO05D001157 6.8e-10 67.8 89 40.4
Thhalv10027644m.g Eutrema salsugineum HOM05D001331 ORTHO05D001157 6.8e-10 67.8 75 45.3
Medtr7g031420 Medicago truncatula HOM05D001331 ORTHO05D001157 6.8e-10 67.8 86 41.9
Dinv25676 Davidia involucrata HOM05D001331 ORTHO05D001157 8.9e-10 67.4 82 46.3
PGR083G0547 Punica granatum HOM05D001331 ORTHO05D001157 8.9e-10 67.4 88 39.8
A04p13890 Brassica napus HOM05D001331 ORTHO05D001157 1.2e-09 67.0 75 46.7
Gohir.D05G248300 Gossypium hirsutum HOM05D001331 ORTHO05D001157 1.2e-09 67.0 81 45.7
Lj1g0014933 Lotus japonicus HOM05D001331 ORTHO05D001157 1.2e-09 67.0 91 41.8
BraA04t17054Z Brassica rapa HOM05D001331 ORTHO05D001157 1.5e-09 66.6 75 46.7
Aqoxy5G03473 Aquilegia oxysepala HOM05D001331 ORTHO05D001157 2.0e-09 66.2 77 45.5
BcaC08g44492 Brassica carinata HOM05D001331 ORTHO05D001157 2.6e-09 65.9 75 45.3
C06p19440 Brassica napus HOM05D001331 ORTHO05D001157 2.6e-09 65.9 75 45.3
COL.COLO4_13736 Corchorus olitorius HOM05D001331 ORTHO05D001157 3.4e-09 65.5 82 42.7
Sp7g01090 Schrenkiella parvula HOM05D001331 ORTHO05D001157 3.4e-09 65.5 75 45.3
BcaB06g27563 Brassica carinata HOM05D001331 ORTHO05D001157 4.4e-09 65.1 70 48.6
CSS0001891 Camellia sinensis var. sinensis HOM05D005595 ORTHO05D006962 4.4e-09 65.1 69 50.7
Nn4g22389 Nelumbo nucifera HOM05D001331 ORTHO05D001157 4.4e-09 65.1 84 50.0
Aa31LG9G820 Aethionema arabicum HOM05D001331 ORTHO05D001157 7.5e-09 64.3 69 50.7
BcaC02g09000 Brassica carinata HOM05D001331 ORTHO05D001157 7.5e-09 64.3 75 44.0
BolC4t26366H Brassica oleracea HOM05D001331 ORTHO05D001157 7.5e-09 64.3 75 44.0
Carub.0007s3466 Capsella rubella HOM05D001331 ORTHO05D001157 9.9e-09 63.9 75 42.7
HanXRQChr09g0256031 Helianthus annuus HOM05D001331 ORTHO05D001157 1.3e-08 63.5 75 42.7
C04p47650 Brassica napus HOM05D001331 ORTHO05D001157 1.7e-08 63.2 75 44.0
QL02p072043 Quercus lobata HOM05D001331 ORTHO05D001157 1.7e-08 63.2 77 48.1
Hma1.2p1_0571F.1_g180730 Hydrangea macrophylla HOM05D001331 ORTHO05D001157 2.2e-08 62.8 84 44.0
SEGI_17466 Sequoiadendron giganteum HOM05D001331 ORTHO05D001157 2.2e-08 62.8 71 40.8
vmacro00334 Vaccinium macrocarpon HOM05D001331 ORTHO05D001157 2.2e-08 62.8 73 46.6
Actinidia30892 Actinidia chinensis HOM05D001331 ORTHO05D001157 2.9e-08 62.4 84 39.3
Migut.H00012 Erythranthe guttata HOM05D001331 ORTHO05D001157 2.9e-08 62.4 72 47.2
DCAR_021766 Daucus carota HOM05D001331 ORTHO05D001157 4.9e-08 61.6 77 44.2
Hund14414 Selenicereus undatus HOM05D001331 ORTHO05D001157 4.9e-08 61.6 71 45.1
Peaxi162Scf00420g00454 Petunia axillaris HOM05D001331 ORTHO05D001157 6.4e-08 61.2 81 42.0
arahy.Tifrunner.gnm1.ann1.TSCV7K Arachis hypogaea HOM05D001331 ORTHO05D001157 1.1e-07 60.5 76 43.4
Rhsim08G0045100 Rhododendron simsii HOM05D001331 ORTHO05D001157 1.1e-07 60.5 72 45.8
VMungo1383G3003 Vigna mungo HOM05D001331 ORTHO05D001157 1.4e-07 60.1 72 45.8
Ah.12g054720 Amaranthus hybridus HOM05D001331 ORTHO05D001157 1.9e-07 59.7 95 35.8
Oeu013649.1 Olea europaea HOM05D001331 ORTHO05D001157 1.9e-07 59.7 74 41.9
Duzib093G1964 Durio zibethinus HOM05D001331 ORTHO05D001157 2.4e-07 59.3 87 42.5
Lalb_Chr22g0360501 Lupinus albus HOM05D001331 ORTHO05D001157 2.4e-07 59.3 86 38.4
TWI12G0610 Tripterygium wilfordii HOM05D001331 ORTHO05D001157 2.4e-07 59.3 77 42.9
GSVIVG01001820001 Vitis vinifera HOM05D001331 ORTHO05D001157 5.4e-07 58.2 86 39.5
Lj1g0022047 Lotus japonicus HOM05D001331 ORTHO05D001157 1.2e-06 57.0 80 35.0
Sopen02g038580 Solanum pennellii HOM05D001331 ORTHO05D001157 1.2e-06 57.0 73 42.5
SGA_v2.0_scaffold18G08222 Striga asiatica HOM05D001331 ORTHO05D001157 1.6e-06 56.6 71 40.8
EL10Ac5g12161 Beta vulgaris HOM05D001331 ORTHO05D001157 2.1e-06 56.2 97 34.0
A02p03440 Brassica napus HOM05D001331 ORTHO05D001157 2.7e-06 55.8 84 34.5
BolC2t06746H Brassica oleracea HOM05D001331 ORTHO05D001157 2.7e-06 55.8 84 34.5
Solyc02g093930.4 Solanum lycopersicum HOM05D001331 ORTHO05D001157 2.7e-06 55.8 73 42.5
EL10Ac9g21830 Beta vulgaris HOM05D001331 ORTHO05D001157 3.5e-06 55.5 63 44.4
PGSC0003DMG401020221 Solanum tuberosum HOM05D001331 ORTHO05D001157 3.5e-06 55.5 78 39.7
C03p08880 Brassica napus HOM05D001331 ORTHO05D001157 4.6e-06 55.1 80 35.0
BolC3t13383H Brassica oleracea HOM05D001331 ORTHO05D001157 4.6e-06 55.1 80 35.0
Cc07_g00590 Coffea canephora HOM05D001331 ORTHO05D001157 6.0e-06 54.7 70 40.0
MSTRG.3092 Avicennia marina HOM05D001331 ORTHO05D001157 7.8e-06 54.3 66 45.5
BcaB08g36861 Brassica carinata HOM05D001331 ORTHO05D001157 7.8e-06 54.3 84 36.9
BcaC04g18906 Brassica carinata HOM05D001331 ORTHO05D001157 7.8e-06 54.3 84 36.9
A10p22800 Brassica napus HOM05D001331 ORTHO05D006132 7.8e-06 54.3 84 36.9
BolC9t58913H Brassica oleracea HOM05D001331 ORTHO05D001157 7.8e-06 54.3 84 36.9
BraA10t44346Z Brassica rapa HOM05D001331 ORTHO05D001157 7.8e-06 54.3 84 36.9
Nitab4.5_0001031g0030 Nicotiana tabacum HOM05D001331 ORTHO05D001157 7.8e-06 54.3 73 39.7


User provided reference genes

Program Settings