Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0169891 Rosa chinensis HOM05D004198 ORTHO05D340468 1.8e-69 265.8 129 100.0
RcHm_v2.0_Chr2g0121241 Rosa chinensis HOM05D004198 ORTHO05D347069 1.2e-65 253.1 129 96.1
RcHm_v2.0_Chr2g0096481 Rosa chinensis HOM05D004198 ORTHO05D006470 4.8e-35 151.4 96 79.2
FAN28G0237 Fragaria x ananassa HOM05D004198 ORTHO05D006470 5.0e-32 141.4 96 75.0
FAN19G0627 Fragaria x ananassa HOM05D004198 ORTHO05D006470 8.6e-32 140.6 96 75.0
FvH4_1g09640 Fragaria vesca HOM05D004198 ORTHO05D006470 4.2e-31 138.3 96 74.0
FAN26G2565 Fragaria x ananassa HOM05D004198 ORTHO05D006470 4.2e-31 138.3 96 74.0
MD02G1105000 Malus domestica HOM05D004198 ORTHO05D006470 1.0e-29 133.7 96 68.8
TAR624G1053 Trochodendron aralioides HOM05D004198 ORTHO05D006470 1.2e-28 130.2 96 65.6
MD02G1105300 Malus domestica HOM05D004198 ORTHO05D006470 3.4e-28 128.6 96 66.7
Duzib150G0139 Durio zibethinus HOM05D004198 ORTHO05D006470 5.7e-28 127.9 96 65.6
Haze_26080 Corylus avellana HOM05D004198 ORTHO05D006470 9.8e-28 127.1 96 63.5
Prupe.7G189800 Prunus persica HOM05D004198 ORTHO05D006470 9.8e-28 127.1 96 64.6
Thecc.09G068000 Theobroma cacao HOM05D004198 ORTHO05D006470 9.8e-28 127.1 96 63.5
Cfa002929 Carpinus fangiana HOM05D004198 ORTHO05D006470 1.7e-27 126.3 96 63.5
COL.COLO4_21183 Corchorus olitorius HOM05D004198 ORTHO05D006470 2.4e-26 122.5 85 67.1
Duzib168G0708 Durio zibethinus HOM05D004198 ORTHO05D006470 2.4e-26 122.5 96 63.5
MBI13_g01654_MAGBIO Magnolia biondii HOM05D004198 ORTHO05D006470 2.4e-26 122.5 96 60.4
Cpa.g.sc82.44 Carica papaya HOM05D004198 ORTHO05D006470 3.1e-26 122.1 96 62.5
Eucgr.C03183 Eucalyptus grandis HOM05D004198 ORTHO05D006470 4.1e-26 121.7 96 61.5
Dinv25493 Davidia involucrata HOM05D004198 ORTHO05D006470 5.4e-26 121.3 96 63.5
PGR044G0871 Punica granatum HOM05D004198 ORTHO05D006470 5.4e-26 121.3 96 61.5
CANSAT56G1757 Cannabis sativa HOM05D004198 ORTHO05D006470 7.0e-26 120.9 96 58.3
GSVIVG01014998001 Vitis vinifera HOM05D004198 ORTHO05D006470 1.6e-25 119.8 96 61.5
Carub.0007s0731 Capsella rubella HOM05D004198 ORTHO05D006470 2.0e-25 119.4 87 63.2
Migut.J00870 Erythranthe guttata HOM05D004198 ORTHO05D006470 2.0e-25 119.4 96 64.6
Manes.16G088900 Manihot esculenta HOM05D004198 ORTHO05D006470 2.0e-25 119.4 96 59.4
QL11p003422 Quercus lobata HOM05D004198 ORTHO05D006470 2.0e-25 119.4 96 61.5
Actinidia39606 Actinidia chinensis HOM05D004198 ORTHO05D006470 2.7e-25 119.0 96 62.5
Ciclev10007313m.g Citrus clementina HOM05D004198 ORTHO05D006470 2.7e-25 119.0 96 64.6
Carub.0007s0730 Capsella rubella HOM05D004198 ORTHO05D006470 3.5e-25 118.6 96 59.4
Nn8g38508 Nelumbo nucifera HOM05D004198 ORTHO05D006470 3.5e-25 118.6 96 58.3
vmacro17070 Vaccinium macrocarpon HOM05D004198 ORTHO05D006470 3.5e-25 118.6 96 62.5
Potri.006G134300 Populus trichocarpa HOM05D004198 ORTHO05D006470 5.9e-25 117.9 96 58.3
TWI63G0842 Tripterygium wilfordii HOM05D004198 ORTHO05D006470 5.9e-25 117.9 96 58.3
Cc00_g13770 Coffea canephora HOM05D004198 ORTHO05D006470 7.8e-25 117.5 96 64.6
Actinidia33515 Actinidia chinensis HOM05D004198 ORTHO05D006470 1.0e-24 117.1 96 60.4
AT4G33150 Arabidopsis thaliana HOM05D004198 ORTHO05D006470 1.0e-24 117.1 96 60.4
Thhalv10024287m.g Eutrema salsugineum HOM05D004198 ORTHO05D006470 1.3e-24 116.7 85 64.7
Oeu021231.1 Olea europaea HOM05D004198 ORTHO05D006470 1.3e-24 116.7 96 59.4
AL7G18400 Arabidopsis lyrata HOM05D004198 ORTHO05D006470 2.3e-24 115.9 96 59.4
CARHR241180 Cardamine hirsuta HOM05D004198 ORTHO05D006470 2.3e-24 115.9 85 62.4
CiPaw.03G199300 Carya illinoinensis HOM05D004198 ORTHO05D006470 2.3e-24 115.9 96 60.4
Hma1.2p1_0179F.1_g079100 Hydrangea macrophylla HOM05D004198 ORTHO05D006470 2.9e-24 115.5 96 59.4
Sabra06G0105400 Salix brachista HOM05D004198 ORTHO05D006470 2.9e-24 115.5 96 59.4
CSS0027728 Camellia sinensis var. sinensis HOM05D004198 ORTHO05D006470 3.8e-24 115.2 96 60.4
MSTRG.5977 Avicennia marina HOM05D004198 ORTHO05D006470 8.6e-24 114.0 85 63.5
BcaC09g52122 Brassica carinata HOM05D004198 ORTHO05D006470 1.5e-23 113.2 85 62.4
C07p59510 Brassica napus HOM05D004198 ORTHO05D006470 1.5e-23 113.2 85 62.4
BolC7t46395H Brassica oleracea HOM05D004198 ORTHO05D006470 1.5e-23 113.2 85 62.4
Duzib168G0961 Durio zibethinus HOM05D004198 ORTHO05D006470 1.5e-23 113.2 80 66.2
Gohir.A06G082000 Gossypium hirsutum HOM05D004198 ORTHO05D006470 1.5e-23 113.2 120 49.2
BcaNung02155 Brassica carinata HOM05D004198 ORTHO05D006470 1.9e-23 112.8 80 65.0
Sp7g30900 Schrenkiella parvula HOM05D004198 ORTHO05D006470 1.9e-23 112.8 85 61.2
C07p59520 Brassica napus HOM05D004198 ORTHO05D006470 2.5e-23 112.5 85 62.4
Gorai.010G094700 Gossypium raimondii HOM05D004198 ORTHO05D006470 2.5e-23 112.5 120 48.3
Sc14g0000910 Simmondsia chinensis HOM05D004198 ORTHO05D006470 2.5e-23 112.5 96 59.4
EL10Ac8g18953 Beta vulgaris HOM05D004198 ORTHO05D006470 3.3e-23 112.1 96 58.3
A03p61830 Brassica napus HOM05D004198 ORTHO05D006470 3.3e-23 112.1 85 61.2
BraA03t15221Z Brassica rapa HOM05D004198 ORTHO05D006470 3.3e-23 112.1 85 61.2
AL7G18410 Arabidopsis lyrata HOM05D004198 ORTHO05D006470 4.3e-23 111.7 85 60.0
BraA03t15222Z Brassica rapa HOM05D004198 ORTHO05D006470 4.3e-23 111.7 99 58.6
A01p05020 Brassica napus HOM05D004198 ORTHO05D006470 5.6e-23 111.3 85 62.4
C01p05470 Brassica napus HOM05D004198 ORTHO05D006470 5.6e-23 111.3 85 61.2
BolC1t00527H Brassica oleracea HOM05D004198 ORTHO05D006470 5.6e-23 111.3 85 61.2
BraA01t00484Z Brassica rapa HOM05D004198 ORTHO05D006470 5.6e-23 111.3 85 62.4
PGSC0003DMG401015935 Solanum tuberosum HOM05D004198 ORTHO05D006470 5.6e-23 111.3 96 56.2
Aa31sc786G10 Aethionema arabicum HOM05D004198 ORTHO05D006470 9.5e-23 110.5 96 58.3
BolC7t46396H Brassica oleracea HOM05D004198 ORTHO05D006470 9.5e-23 110.5 85 61.2
Solyc07g017610.3 Solanum lycopersicum HOM05D004198 ORTHO05D006470 9.5e-23 110.5 96 56.2
Atru.chr7.1797 Acer truncatum HOM05D004198 ORTHO05D006470 2.1e-22 109.4 96 57.3
Gohir.D06G081400 Gossypium hirsutum HOM05D004198 ORTHO05D006470 2.1e-22 109.4 120 47.5
Sopen07g006460 Solanum pennellii HOM05D004198 ORTHO05D006470 2.8e-22 109.0 96 55.2
THA.LOC104804447 Tarenaya hassleriana HOM05D004198 ORTHO05D006470 2.8e-22 109.0 85 60.0
Phvul.003G126300 Phaseolus vulgaris HOM05D004198 ORTHO05D006470 4.7e-22 108.2 96 59.4
EL10Ac8g18951 Beta vulgaris HOM05D004198 ORTHO05D006470 8.0e-22 107.5 96 55.2
PGSC0003DMG400002301 Solanum tuberosum HOM05D004198 ORTHO05D006470 1.0e-21 107.1 96 55.2
Glyma.17G044300 Glycine max HOM05D004198 ORTHO05D006470 1.8e-21 106.3 96 59.4
Lj4g0026986 Lotus japonicus HOM05D004198 ORTHO05D006470 1.8e-21 106.3 96 58.3
Lalb_Chr12g0200381 Lupinus albus HOM05D004198 ORTHO05D006470 1.8e-21 106.3 97 59.8
PSO135G0314 Papaver somniferum HOM05D004198 ORTHO05D006470 1.8e-21 106.3 96 57.3
Thecc.09G068400 Theobroma cacao HOM05D004198 ORTHO05D006470 3.0e-21 105.5 80 62.5
CAN.G86.12 Capsicum annuum HOM05D004198 ORTHO05D006470 4.0e-21 105.1 96 53.1
TPR.G12649 Trifolium pratense HOM05D004198 ORTHO05D006470 4.0e-21 105.1 96 57.3
HPP92_009326 Vanilla planifolia HOM05D004198 ORTHO05D006470 5.2e-21 104.8 96 54.2
VMungo1215G1653 Vigna mungo HOM05D004198 ORTHO05D006470 6.8e-21 104.4 96 57.3
Lsat_1_v5_gn_5_138341 Lactuca sativa HOM05D004198 ORTHO05D006470 8.9e-21 104.0 96 55.2
Hund08916 Selenicereus undatus HOM05D004198 ORTHO05D006470 1.2e-20 103.6 96 55.2
arahy.Tifrunner.gnm1.ann1.54PPAU Arachis hypogaea HOM05D004198 ORTHO05D006470 1.5e-20 103.2 96 57.3
Ciclev10008705m.g Citrus clementina HOM05D004198 ORTHO05D006470 2.0e-20 102.8 94 56.4
Nitab4.5_0001114g0030 Nicotiana tabacum HOM05D004198 ORTHO05D006470 2.0e-20 102.8 85 56.5
Peaxi162Scf00452g00120 Petunia axillaris HOM05D004198 ORTHO05D006470 2.0e-20 102.8 96 56.2
CsaV3_1G041440 Cucumis sativus L. HOM05D004198 ORTHO05D006470 2.6e-20 102.4 118 45.8
Ah.09g228850 Amaranthus hybridus HOM05D004198 ORTHO05D006470 3.4e-20 102.1 96 53.1
Ca_21348_v3 Cicer arietinum L. HOM05D004198 ORTHO05D006470 3.4e-20 102.1 96 55.2
Sed0024058 Sechium edule HOM05D004198 ORTHO05D006470 3.4e-20 102.1 117 47.9
Aqoxy7G04190 Aquilegia oxysepala HOM05D004198 ORTHO05D006470 4.4e-20 101.7 96 54.2
Psat4g019880 Pisum sativum HOM05D004198 ORTHO05D006470 4.4e-20 101.7 96 55.2
AUR62028335 Chenopodium quinoa HOM05D004198 ORTHO05D006470 5.7e-20 101.3 96 55.2
ClCG03G014720 Citrullus lanatus HOM05D004198 ORTHO05D006470 5.7e-20 101.3 96 53.1
Glyma.13G115500 Glycine max HOM05D004198 ORTHO05D006470 7.5e-20 100.9 96 58.3
PSO135G0878 Papaver somniferum HOM05D004198 ORTHO05D000955 7.5e-20 100.9 96 56.2
MELO3C015556.2 Cucumis melo HOM05D004198 ORTHO05D006470 9.8e-20 100.5 118 44.9
arahy.Tifrunner.gnm1.ann1.Q7P4IG Arachis hypogaea HOM05D004198 ORTHO05D006470 1.3e-19 100.1 96 55.2
Nitab4.5_0000055g0100 Nicotiana tabacum HOM05D004198 ORTHO05D006470 1.3e-19 100.1 96 52.1
SalBow6G6057 Salvia bowleyana HOM05D004198 ORTHO05D006470 1.7e-19 99.8 96 55.2
TWI63G0157 Tripterygium wilfordii HOM05D004198 ORTHO05D006470 1.7e-19 99.8 93 57.0
ATR0099G092 Amborella trichopoda HOM05D004198 ORTHO05D006470 2.2e-19 99.4 85 58.8
ECA240G2250 Erigeron canadensis HOM05D004198 ORTHO05D006470 2.9e-19 99.0 96 54.2
Medtr4g124470 Medicago truncatula HOM05D004198 ORTHO05D006470 3.7e-19 98.6 96 53.1
Os02g0783700 Oryza sativa ssp. japonica HOM05D004198 ORTHO05D006470 4.9e-19 98.2 96 51.0
CDE05G0881 Ceratophyllum demersum HOM05D004198 ORTHO05D006470 2.7e-17 92.4 120 45.0
HanXRQChr03g0060011 Helianthus annuus HOM05D004198 ORTHO05D006470 2.7e-17 92.4 96 54.2
Atru.chr7.1795 Acer truncatum HOM05D004198 ORTHO05D006470 3.5e-17 92.0 82 57.3
SGA_v2.0_scaffold31G12701 Striga asiatica HOM05D004198 ORTHO05D006470 2.1e-14 82.8 68 63.2
Rhsim05G0001300 Rhododendron simsii HOM05D004198 ORTHO05D006470 3.6e-14 82.0 173 34.7
DCAR_000446 Daucus carota HOM05D004198 ORTHO05D006470 6.4e-11 71.2 74 48.6
unitig_22.g6576 Utricularia gibba HOM05D004198 ORTHO05D006470 6.4e-11 71.2 84 47.6
Mapoly0072s0092 Marchantia polymorpha HOM05D004198 ORTHO05D006470 2.4e-10 69.3 87 44.8
Potri.006G134450 Populus trichocarpa HOM05D004198 ORTHO05D006470 6.6e-08 61.2 52 55.8
SMO145G0289 Selaginella moellendorffii HOM05D004198 ORTHO05D006470 2.1e-06 56.2 96 41.7
A03p61840 Brassica napus HOM05D004198 ORTHO05D006470 8.1e-06 54.3 56 46.4
PSO724G0393 Papaver somniferum HOM05D004198 ORTHO05D006470 8.1e-06 54.3 41 61.0


User provided reference genes

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