Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0168941 Rosa chinensis HOM05D005157 ORTHO05D006652 2.0e-71 272.3 136 100.0
RcHm_v2.0_Chr1g0317781 Rosa chinensis HOM05D005157 ORTHO05D006652 8.8e-19 97.4 46 97.8
MD03G1120700 Malus domestica HOM05D005157 ORTHO05D006652 2.5e-18 95.9 76 64.5
CiPaw.14G084700 Carya illinoinensis HOM05D005157 ORTHO05D006652 3.3e-18 95.5 55 81.8
FAN21G2652 Fragaria x ananassa HOM05D005157 ORTHO05D006652 3.3e-18 95.5 55 81.8
Prupe.6G104200 Prunus persica HOM05D005157 ORTHO05D006652 3.3e-18 95.5 55 81.8
TWI79G1101 Tripterygium wilfordii HOM05D005157 ORTHO05D006652 3.3e-18 95.5 76 61.8
Gohir.D05G104400 Gossypium hirsutum HOM05D005157 ORTHO05D006652 4.3e-18 95.1 55 83.6
Gorai.009G108600 Gossypium raimondii HOM05D005157 ORTHO05D006652 4.3e-18 95.1 55 83.6
RcHm_v2.0_Chr5g0058571 Rosa chinensis HOM05D005157 ORTHO05D006652 4.3e-18 95.1 55 81.8
Duzib168G1383 Durio zibethinus HOM05D005157 ORTHO05D006652 5.7e-18 94.7 55 81.8
Cfa011300 Carpinus fangiana HOM05D005157 ORTHO05D006652 7.4e-18 94.4 55 81.8
Haze_23783 Corylus avellana HOM05D005157 ORTHO05D006652 7.4e-18 94.4 55 81.8
MD11G1139300 Malus domestica HOM05D005157 ORTHO05D006652 7.4e-18 94.4 55 80.0
TWI31G1055 Tripterygium wilfordii HOM05D005157 ORTHO05D006652 7.4e-18 94.4 76 63.2
COL.COLO4_18312 Corchorus olitorius HOM05D005157 ORTHO05D006652 9.7e-18 94.0 55 81.8
RcHm_v2.0_Chr1g0339271 Rosa chinensis HOM05D005157 ORTHO05D006652 9.7e-18 94.0 55 81.8
Cpa.g.sc65.7 Carica papaya HOM05D005157 ORTHO05D006652 1.7e-17 93.2 78 61.5
Thecc.09G343300 Theobroma cacao HOM05D005157 ORTHO05D006652 2.8e-17 92.4 55 80.0
FAN25G2587 Fragaria x ananassa HOM05D005157 ORTHO05D006652 3.7e-17 92.0 55 80.0
RcHm_v2.0_Chr1g0339171 Rosa chinensis HOM05D005157 ORTHO05D006652 3.7e-17 92.0 52 86.5
FvH4_3g31780 Fragaria vesca HOM05D005157 ORTHO05D006652 4.8e-17 91.7 55 78.2
FAN11G1125 Fragaria x ananassa HOM05D005157 ORTHO05D006652 4.8e-17 91.7 55 78.2
Gohir.A05G104600 Gossypium hirsutum HOM05D005157 ORTHO05D006652 4.8e-17 91.7 55 81.8
FAN16G1661 Fragaria x ananassa HOM05D005157 ORTHO05D006652 8.2e-17 90.9 55 78.2
Actinidia07149 Actinidia chinensis HOM05D005157 ORTHO05D006652 1.4e-16 90.1 55 78.2
Ciclev10029091m.g Citrus clementina HOM05D005157 ORTHO05D006652 1.4e-16 90.1 55 76.4
Dinv32724 Davidia involucrata HOM05D005157 ORTHO05D006652 1.4e-16 90.1 55 78.2
Lalb_Chr03g0027481 Lupinus albus HOM05D005157 ORTHO05D006652 1.4e-16 90.1 55 74.5
Peaxi162Scf00858g00217 Petunia axillaris HOM05D005157 ORTHO05D006652 1.4e-16 90.1 55 78.2
MELO3C025782.2 Cucumis melo HOM05D005157 ORTHO05D006652 3.1e-16 89.0 77 57.1
ECA238G0155 Erigeron canadensis HOM05D005157 ORTHO05D006652 3.1e-16 89.0 55 78.2
Lalb_Chr01g0004391 Lupinus albus HOM05D005157 ORTHO05D006652 3.1e-16 89.0 55 72.7
Medtr4g058720 Medicago truncatula HOM05D005157 ORTHO05D006652 3.1e-16 89.0 55 74.5
Sabra09G0006500 Salix brachista HOM05D005157 ORTHO05D006652 3.1e-16 89.0 55 70.9
ClCG02G021260 Citrullus lanatus HOM05D005157 ORTHO05D006652 4.1e-16 88.6 77 57.1
Nitab4.5_0003747g0010 Nicotiana tabacum HOM05D005157 ORTHO05D006652 4.1e-16 88.6 55 76.4
GSVIVG01025209001 Vitis vinifera HOM05D005157 ORTHO05D006652 4.1e-16 88.6 55 72.7
Potri.009G010600 Populus trichocarpa HOM05D005157 ORTHO05D006652 5.3e-16 88.2 55 70.9
THA.LOC104826376 Tarenaya hassleriana HOM05D005157 ORTHO05D006652 6.9e-16 87.8 55 72.7
CANSAT78G0434 Cannabis sativa HOM05D005157 ORTHO05D006652 9.1e-16 87.4 76 59.2
Migut.D02241 Erythranthe guttata HOM05D005157 ORTHO05D006652 9.1e-16 87.4 55 72.7
Lsat_1_v5_gn_2_98721 Lactuca sativa HOM05D005157 ORTHO05D006652 9.1e-16 87.4 55 76.4
Nn2g10829 Nelumbo nucifera HOM05D005157 ORTHO05D006652 9.1e-16 87.4 55 76.4
MSTRG.18672 Avicennia marina HOM05D005157 ORTHO05D006652 1.2e-15 87.0 55 72.7
Ca_19285_v3 Cicer arietinum L. HOM05D005157 ORTHO05D006652 1.2e-15 87.0 55 70.9
arahy.Tifrunner.gnm1.ann1.7C35UG Arachis hypogaea HOM05D005157 ORTHO05D006652 1.5e-15 86.7 55 72.7
arahy.Tifrunner.gnm1.ann1.PZ74PR Arachis hypogaea HOM05D005157 ORTHO05D006652 1.5e-15 86.7 55 72.7
Glyma.12G076900 Glycine max HOM05D005157 ORTHO05D006652 1.5e-15 86.7 53 77.4
CsaV3_6G014010 Cucumis sativus L. HOM05D005157 ORTHO05D006652 2.0e-15 86.3 80 55.0
Eucgr.J00908 Eucalyptus grandis HOM05D005157 ORTHO05D006652 2.0e-15 86.3 55 72.7
Cc01_g10930 Coffea canephora HOM05D005157 ORTHO05D006652 2.6e-15 85.9 55 70.9
Solyc06g005860.3 Solanum lycopersicum HOM05D005157 ORTHO05D006652 2.6e-15 85.9 55 74.5
Sopen06g001830 Solanum pennellii HOM05D005157 ORTHO05D006652 2.6e-15 85.9 55 74.5
PGSC0003DMG400020831 Solanum tuberosum HOM05D005157 ORTHO05D006652 2.6e-15 85.9 55 74.5
CSS0048550 Camellia sinensis var. sinensis HOM05D005157 ORTHO05D006652 3.4e-15 85.5 55 72.7
Lj3g0007277 Lotus japonicus HOM05D005157 ORTHO05D006652 4.5e-15 85.1 55 70.9
Psat7g192080 Pisum sativum HOM05D005157 ORTHO05D006652 4.5e-15 85.1 55 70.9
Prupe.6G104100 Prunus persica HOM05D005157 ORTHO05D006652 5.9e-15 84.7 48 81.2
arahy.Tifrunner.gnm1.ann1.SE8XGI Arachis hypogaea HOM05D005157 ORTHO05D006652 7.7e-15 84.3 55 70.9
arahy.Tifrunner.gnm1.ann1.T9YDZ2 Arachis hypogaea HOM05D005157 ORTHO05D006652 7.7e-15 84.3 55 70.9
Potri.004G212500 Populus trichocarpa HOM05D005157 ORTHO05D006652 7.7e-15 84.3 55 67.3
Rhsim13G0095800 Rhododendron simsii HOM05D005157 ORTHO05D006652 7.7e-15 84.3 52 76.9
TPR.G6155 Trifolium pratense HOM05D005157 ORTHO05D006652 7.7e-15 84.3 55 70.9
Manes.04G018600 Manihot esculenta HOM05D005157 ORTHO05D006652 1.0e-14 84.0 55 70.9
Phvul.011G080900 Phaseolus vulgaris HOM05D005157 ORTHO05D006652 1.0e-14 84.0 53 71.7
Aqoxy5G02347 Aquilegia oxysepala HOM05D005157 ORTHO05D006652 1.3e-14 83.6 55 72.7
PGR119G0190 Punica granatum HOM05D005157 ORTHO05D006652 1.3e-14 83.6 55 70.9
VMungo1127G1275 Vigna mungo HOM05D005157 ORTHO05D006652 1.7e-14 83.2 53 71.7
CAN.G59.23 Capsicum annuum HOM05D005157 ORTHO05D006652 2.9e-14 82.4 55 70.9
CAN.G741.13 Capsicum annuum HOM05D005157 ORTHO05D006652 3.8e-14 82.0 88 48.9
Glyma.11G145000 Glycine max HOM05D005157 ORTHO05D006652 3.8e-14 82.0 53 73.6
SalBow3G0979 Salvia bowleyana HOM05D005157 ORTHO05D006652 3.8e-14 82.0 55 69.1
SGA_v2.0_scaffold180G39644 Striga asiatica HOM05D005157 ORTHO05D006652 3.8e-14 82.0 55 69.1
HanXRQChr14g0452641 Helianthus annuus HOM05D005157 ORTHO05D006652 5.0e-14 81.6 55 72.7
AT4G27490 Arabidopsis thaliana HOM05D005157 ORTHO05D006652 6.5e-14 81.3 78 51.3
Carub.0007s1336 Capsella rubella HOM05D005157 ORTHO05D006652 6.5e-14 81.3 55 63.6
DCAR_003448 Daucus carota HOM05D000076 ORTHO05D003143 8.5e-14 80.9 78 55.1
AL7G25280 Arabidopsis lyrata HOM05D005157 ORTHO05D006652 1.4e-13 80.1 55 63.6
Thhalv10026036m.g Eutrema salsugineum HOM05D005157 ORTHO05D006652 1.4e-13 80.1 55 63.6
CARHR235170 Cardamine hirsuta HOM05D005157 ORTHO05D006652 1.9e-13 79.7 55 63.6
Sp7g25430 Schrenkiella parvula HOM05D005157 ORTHO05D006652 3.2e-13 79.0 55 61.8
Atru.chr3.3604 Acer truncatum HOM05D005157 ORTHO05D006652 4.2e-13 78.6 55 67.3
Aa31LG5G10030 Aethionema arabicum HOM05D005157 ORTHO05D006652 5.5e-13 78.2 55 65.5
PSO339G6554 Papaver somniferum HOM05D005157 ORTHO05D006652 7.2e-13 77.8 55 69.1
PSO801G0513 Papaver somniferum HOM05D005157 ORTHO05D006652 7.2e-13 77.8 55 69.1
TPR.G10725 Trifolium pratense HOM05D005157 ORTHO05D006652 7.2e-13 77.8 55 69.1
CAN.G483.9 Capsicum annuum HOM05D005157 ORTHO05D006652 1.2e-12 77.0 55 67.3
CDE03G0292 Ceratophyllum demersum HOM05D005157 ORTHO05D006652 1.2e-12 77.0 55 63.6
A01p18680 Brassica napus HOM05D005157 ORTHO05D006652 1.6e-12 76.6 55 61.8
Sc20g0002840 Simmondsia chinensis HOM05D005157 ORTHO05D006652 2.7e-12 75.9 49 71.4
C01p23670 Brassica napus HOM05D005157 ORTHO05D006652 3.6e-12 75.5 55 60.0
BolC1t02314H Brassica oleracea HOM05D005157 ORTHO05D006652 3.6e-12 75.5 55 60.0
BraA01t01817Z Brassica rapa HOM05D005157 ORTHO05D006652 3.6e-12 75.5 55 60.0
Hund01506 Selenicereus undatus HOM05D005157 ORTHO05D006652 6.1e-12 74.7 55 67.3
ATR0048G044 Amborella trichopoda HOM05D005157 ORTHO05D006652 7.9e-12 74.3 52 67.3
AUR62026913 Chenopodium quinoa HOM05D005157 ORTHO05D006652 7.9e-12 74.3 55 67.3
HPP92_016484 Vanilla planifolia HOM05D005157 ORTHO05D006652 7.9e-12 74.3 75 53.3
unitig_747.g21986 Utricularia gibba HOM05D005157 ORTHO05D006652 1.0e-11 73.9 55 58.2
AUR62039868 Chenopodium quinoa HOM05D005157 ORTHO05D006652 1.8e-11 73.2 55 65.5
EL10Ac7g16615 Beta vulgaris HOM05D005157 ORTHO05D006652 3.0e-11 72.4 55 65.5
arahy.Tifrunner.gnm1.ann1.6WIU20 Arachis hypogaea HOM05D005157 ORTHO05D006652 3.9e-11 72.0 53 62.3
Ah.08g211710 Amaranthus hybridus HOM05D005157 ORTHO05D006652 6.7e-11 71.2 48 66.7
Actinidia24113 Actinidia chinensis HOM05D005157 ORTHO05D006652 1.5e-10 70.1 45 68.9
vmacro03211 Vaccinium macrocarpon HOM05D005157 ORTHO05D006652 2.0e-10 69.7 43 76.7
HPP92_016497 Vanilla planifolia HOM05D005157 ORTHO05D006652 2.0e-10 69.7 47 68.1
Os03g0844450 Oryza sativa ssp. japonica HOM05D005157 ORTHO05D006652 3.7e-09 65.5 54 53.7
Os08g0116800 Oryza sativa ssp. japonica HOM05D005157 ORTHO05D006652 6.3e-09 64.7 54 51.9
PSO339G2625 Papaver somniferum HOM05D005157 ORTHO05D006652 2.4e-08 62.8 47 61.7
Mapoly0055s0093 Marchantia polymorpha HOM05D005157 ORTHO05D006652 5.3e-08 61.6 54 50.0
SHI32600 Sapria himalayana HOM05D005157 ORTHO05D006652 7.0e-08 61.2 49 59.2
Zm00001eb328370 Zea mays HOM05D005157 ORTHO05D006652 7.0e-08 61.2 53 50.9
SMO358G0168 Selaginella moellendorffii HOM05D005157 ORTHO05D006652 6.5e-06 54.7 51 49.0


User provided reference genes

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