Gene: AT4G27490

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT4G27490
  • Transcript Identifier AT4G27490.4
  • Gene Type Coding gene
  • Location Chr4 : 13739961-13741647 : positive

Gene Family Information

  • ID HOM05D005157
  • #Genes/#Species 146/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT4G27490.4
  • symbol RRP41L
  • full_name RRP41 like
  • uniprot A2RVK7

Descriptions

  • Description 3'-5'-exoribonuclease family protein
  • Computational description 3'-5'-exoribonuclease family protein; FUNCTIONS IN: 3'-5'-exoribonuclease activity, RNA binding; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Exoribonuclease, phosphorolytic domain 2 (InterPro:IPR015847), Exoribonuclease, phosphorolytic domain 1 (InterPro:IPR001247), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568); BEST Arabidopsis thaliana protein match is: 3'-5'-exoribonuclease family protein (TAIR:AT3G61620.2); Has 6020 Blast hits to 6020 proteins in 1904 species: Archae - 333; Bacteria - 3622; Metazoa - 423; Fungi - 273; Plants - 197; Viruses - 0; Other Eukaryotes - 1172 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0034475
IBA
Gene OntologyU4 snRNA 3'-end processing1
GO:0006364
IEA
GOA DatabaserRNA processing
GO:0090305
IEA
GOA Databasenucleic acid phosphodiester bond hydrolysis
GO:0016075
IBA
Gene OntologyrRNA catabolic process1
GO:0071051
IBA
Gene Ontologypolyadenylation-dependent snoRNA 3'-end processing1
GO:0071028
IBA
Gene Ontologynuclear mRNA surveillance1
GO:0034427
IBA
Gene Ontologynuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'1
GO:0090351
IMP
Gene Ontologyseedling development2
GO:0009845
IMP
Gene Ontologyseed germination2

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0008408
IMP
Gene Ontology3'-5' exonuclease activity2

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000178
IEA
GOA Databaseexosome (RNase complex)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
IDA
Gene Ontologynucleus2
GO:0005737
IEA
GOA Databasecytoplasm
GO:0005737
IDA
Gene Ontologycytoplasm2
GO:0000177
IBA
Gene Ontologycytoplasmic exosome (RNase complex)1
GO:0009507
ISM
Gene Ontologychloroplast
GO:0005730
IBA
Gene Ontologynucleolus1
GO:0000176
IBA
Gene Ontologynuclear exosome (RNase complex)1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001247 Exoribonuclease, phosphorolytic domain 1
IPR027408 PNPase/RNase PH domain superfamily
IPR036345 Exoribonuclease, PH domain 2 superfamily
IPR020568 Ribosomal protein S5 domain 2-type fold
IPR015847 Exoribonuclease, phosphorolytic domain 2
Mapman id Description
16.4.1.1.9 RNA processing.RNA surveillance.exosome complex.EXO9 core complex.component MTR3/RRP41L