Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0166651 Rosa chinensis HOM05D004116 ORTHO05D004734 0.0e+00 2013.0 1033 100.0
FAN09G3106 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 1838.9 1038 91.3
FvH4_6g47550 Fragaria vesca HOM05D004116 ORTHO05D004734 0.0e+00 1834.3 1038 91.3
FAN14G3940 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 1833.2 1038 91.2
FAN02G1010 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 1827.0 1080 88.1
FAN05G0837 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 1804.6 1078 87.5
Prupe.3G259400 Prunus persica HOM05D004116 ORTHO05D004734 0.0e+00 1704.9 1045 85.0
MD17G1056200 Malus domestica HOM05D004116 ORTHO05D004734 0.0e+00 1690.2 1040 84.0
MD09G1060800 Malus domestica HOM05D004116 ORTHO05D004734 0.0e+00 1667.5 1059 82.5
Haze_14475 Corylus avellana HOM05D004116 ORTHO05D004734 0.0e+00 1623.6 1052 80.7
MELO3C009839.2 Cucumis melo HOM05D004116 ORTHO05D004734 0.0e+00 1595.1 1050 79.0
Dinv33806 Davidia involucrata HOM05D004116 ORTHO05D004734 0.0e+00 1594.3 1045 79.6
Dinv11490 Davidia involucrata HOM05D004116 ORTHO05D004734 0.0e+00 1593.2 1052 79.7
ClCG10G015430 Citrullus lanatus HOM05D004116 ORTHO05D004734 0.0e+00 1592.8 1050 79.0
CsaV3_3G041070 Cucumis sativus L. HOM05D004116 ORTHO05D004734 0.0e+00 1590.5 1051 78.8
QL02p039609 Quercus lobata HOM05D004116 ORTHO05D004734 0.0e+00 1587.0 1050 79.7
QL02p039361 Quercus lobata HOM05D004116 ORTHO05D004734 0.0e+00 1586.2 1050 79.7
Hma1.2p1_0037F.1_g023840 Hydrangea macrophylla HOM05D004116 ORTHO05D004734 0.0e+00 1584.7 1049 79.7
CiPaw.03G091800 Carya illinoinensis HOM05D004116 ORTHO05D004734 0.0e+00 1582.0 1051 79.0
GSVIVG01011484001 Vitis vinifera HOM05D004116 ORTHO05D004734 0.0e+00 1579.7 1052 79.3
Atru.chr8.371 Acer truncatum HOM05D004116 ORTHO05D004734 0.0e+00 1571.2 1052 77.7
PGR004G0109 Punica granatum HOM05D004116 ORTHO05D004734 0.0e+00 1568.1 1044 77.7
Manes.01G099400 Manihot esculenta HOM05D004116 ORTHO05D004734 0.0e+00 1566.6 1044 77.8
Lj4C115G25 Lonicera japonica HOM05D004116 ORTHO05D004734 0.0e+00 1566.2 1047 78.4
Actinidia26244 Actinidia chinensis HOM05D004116 ORTHO05D004734 0.0e+00 1565.8 1025 79.4
CAN.G206.195 Capsicum annuum HOM05D004116 ORTHO05D004734 0.0e+00 1565.8 1051 77.9
TWI60G1537 Tripterygium wilfordii HOM05D004116 ORTHO05D004734 0.0e+00 1560.4 1053 77.8
Gorai.006G012900 Gossypium raimondii HOM05D004116 ORTHO05D004734 0.0e+00 1558.9 1064 77.7
Duzib264G1228 Durio zibethinus HOM05D004116 ORTHO05D004734 0.0e+00 1557.7 1056 77.7
DCAR_011063 Daucus carota HOM05D004116 ORTHO05D004734 0.0e+00 1557.3 1045 77.7
Gohir.D09G011100 Gossypium hirsutum HOM05D004116 ORTHO05D004734 0.0e+00 1557.3 1064 77.7
Nitab4.5_0000565g0080 Nicotiana tabacum HOM05D004116 ORTHO05D004734 0.0e+00 1556.2 1082 76.1
vmacro18164 Vaccinium macrocarpon HOM05D004116 ORTHO05D004734 0.0e+00 1556.2 1023 78.9
Sopen02g033270 Solanum pennellii HOM05D004116 ORTHO05D004734 0.0e+00 1555.8 1051 77.2
TWI34G1118 Tripterygium wilfordii HOM05D004116 ORTHO05D004734 0.0e+00 1555.0 1053 77.5
Cc07_g03830 Coffea canephora HOM05D004116 ORTHO05D004734 0.0e+00 1554.7 1046 77.5
PGSC0003DMG400001440 Solanum tuberosum HOM05D004116 ORTHO05D004734 0.0e+00 1553.9 1051 77.3
Ciclev10010958m.g Citrus clementina HOM05D004116 ORTHO05D004734 0.0e+00 1551.6 1058 77.0
TAR629G1084 Trochodendron aralioides HOM05D004116 ORTHO05D004734 0.0e+00 1551.6 1051 76.9
CANSAT64G2358 Cannabis sativa HOM05D004116 ORTHO05D004734 0.0e+00 1550.4 1038 77.4
Sed0005067 Sechium edule HOM05D004116 ORTHO05D004734 0.0e+00 1547.7 1043 77.6
Cfa007620 Carpinus fangiana HOM05D004116 ORTHO05D004734 0.0e+00 1547.3 1052 77.8
Thecc.04G090300 Theobroma cacao HOM05D004116 ORTHO05D004734 0.0e+00 1546.6 1054 77.6
CSS0030715 Camellia sinensis var. sinensis HOM05D004116 ORTHO05D004734 0.0e+00 1540.0 1025 78.2
Sc10g0003320 Simmondsia chinensis HOM05D004116 ORTHO05D004734 0.0e+00 1536.9 1059 76.4
arahy.Tifrunner.gnm1.ann1.M1DWNQ Arachis hypogaea HOM05D004116 ORTHO05D004734 0.0e+00 1536.2 1064 75.8
MSTRG.23904 Avicennia marina HOM05D004116 ORTHO05D004734 0.0e+00 1535.0 1050 76.2
Peaxi162Scf00166g00825 Petunia axillaris HOM05D004116 ORTHO05D004734 0.0e+00 1535.0 1051 76.2
Carub.0006s1357 Capsella rubella HOM05D004116 ORTHO05D004734 0.0e+00 1534.6 1054 74.7
AL6G26260 Arabidopsis lyrata HOM05D004116 ORTHO05D004734 0.0e+00 1533.5 1054 75.1
Migut.H00657 Erythranthe guttata HOM05D004116 ORTHO05D004734 0.0e+00 1532.7 1046 76.2
AT5G15400 Arabidopsis thaliana HOM05D004116 ORTHO05D004734 0.0e+00 1531.9 1054 75.0
Lju41A7G39 Lonicera japonica HOM05D004116 ORTHO05D004734 0.0e+00 1530.8 1063 76.9
THA.LOC104822346 Tarenaya hassleriana HOM05D004116 ORTHO05D004734 0.0e+00 1530.8 1049 75.8
Aa31LG11G14160 Aethionema arabicum HOM05D004116 ORTHO05D004734 0.0e+00 1530.0 1052 76.0
Duzib147G0424 Durio zibethinus HOM05D004116 ORTHO05D004734 0.0e+00 1528.5 1056 76.3
Lalb_Chr21g0318471 Lupinus albus HOM05D004116 ORTHO05D004734 0.0e+00 1528.5 1054 76.1
CARHR197910 Cardamine hirsuta HOM05D004116 ORTHO05D004734 0.0e+00 1528.1 1049 75.5
Eucgr.I01989 Eucalyptus grandis HOM05D004116 ORTHO05D004734 0.0e+00 1525.0 1047 76.5
SGA_v2.0_scaffold4G02415 Striga asiatica HOM05D004116 ORTHO05D004734 0.0e+00 1524.6 1052 75.3
A10p23490 Brassica napus HOM05D004116 ORTHO05D004734 0.0e+00 1521.5 1051 74.4
BraA10t44416Z Brassica rapa HOM05D004116 ORTHO05D004734 0.0e+00 1521.5 1051 74.4
Oeu045355.1 Olea europaea HOM05D004116 ORTHO05D004734 0.0e+00 1521.5 1047 75.9
Sp6g28690 Schrenkiella parvula HOM05D004116 ORTHO05D004734 0.0e+00 1520.4 1048 75.1
Glyma.19G027200 Glycine max HOM05D004116 ORTHO05D004734 0.0e+00 1517.3 1050 75.9
Rhsim08G0073200 Rhododendron simsii HOM05D004116 ORTHO05D004734 0.0e+00 1516.5 1075 74.7
Glyma.13G059200 Glycine max HOM05D004116 ORTHO05D004734 0.0e+00 1515.4 1052 75.8
Nitab4.5_0008573g0070 Nicotiana tabacum HOM05D004116 ORTHO05D004734 0.0e+00 1515.4 1086 74.2
BraA02t05272Z Brassica rapa HOM05D004116 ORTHO05D004734 0.0e+00 1513.0 1053 74.1
Thhalv10012542m.g Eutrema salsugineum HOM05D004116 ORTHO05D004734 0.0e+00 1512.7 1053 74.6
Lj2g0025037 Lotus japonicus HOM05D004116 ORTHO05D004734 0.0e+00 1511.5 1056 75.6
A02p03010 Brassica napus HOM05D004116 ORTHO05D004734 0.0e+00 1510.0 1055 74.2
VMungo0464G1725 Vigna mungo HOM05D004116 ORTHO05D004734 0.0e+00 1509.2 1055 74.9
Ca_04866_v3 Cicer arietinum L. HOM05D004116 ORTHO05D004734 0.0e+00 1507.3 1039 75.6
TPR.G26216 Trifolium pratense HOM05D004116 ORTHO05D004734 0.0e+00 1506.9 1052 74.3
Gohir.A09G012200 Gossypium hirsutum HOM05D004116 ORTHO05D004734 0.0e+00 1505.3 1051 75.3
BolC9t59011H Brassica oleracea HOM05D004116 ORTHO05D004734 0.0e+00 1505.0 1050 74.2
Phvul.004G033100 Phaseolus vulgaris HOM05D004116 ORTHO05D004734 0.0e+00 1505.0 1055 74.7
C09p61720 Brassica napus HOM05D004116 ORTHO05D004734 0.0e+00 1502.3 1050 74.0
SGA_v2.0_scaffold413G51160 Striga asiatica HOM05D004116 ORTHO05D004734 0.0e+00 1500.3 1041 74.9
C02p07680 Brassica napus HOM05D004116 ORTHO05D004734 0.0e+00 1499.6 1057 73.5
BolC2t06699H Brassica oleracea HOM05D004116 ORTHO05D004734 0.0e+00 1497.6 1057 73.4
Potri.017G089600 Populus trichocarpa HOM05D004116 ORTHO05D004734 0.0e+00 1489.6 1046 75.0
Potri.004G121200 Populus trichocarpa HOM05D004116 ORTHO05D004734 0.0e+00 1487.2 1042 75.2
COL.COLO4_07430 Corchorus olitorius HOM05D004116 ORTHO05D004734 0.0e+00 1482.6 1054 74.6
Nn4g23336 Nelumbo nucifera HOM05D004116 ORTHO05D004734 0.0e+00 1479.9 1034 75.1
BcaC03g13414 Brassica carinata HOM05D004116 ORTHO05D004734 0.0e+00 1479.5 1057 73.2
Medtr6g013690 Medicago truncatula HOM05D004116 ORTHO05D004734 0.0e+00 1479.5 1055 73.6
Lsat_1_v5_gn_4_170201 Lactuca sativa HOM05D004116 ORTHO05D004734 0.0e+00 1479.2 1039 74.7
HanXRQChr09g0264141 Helianthus annuus HOM05D004116 ORTHO05D004734 0.0e+00 1478.8 1043 74.8
HanXRQChr15g0488441 Helianthus annuus HOM05D004116 ORTHO05D004734 0.0e+00 1474.9 1031 74.2
arahy.Tifrunner.gnm1.ann1.JWLU7F Arachis hypogaea HOM05D004116 ORTHO05D004734 0.0e+00 1471.1 1053 73.8
Sabra17G0078900 Salix brachista HOM05D004116 ORTHO05D004734 0.0e+00 1456.4 1059 72.7
PSO063G3309 Papaver somniferum HOM05D004116 ORTHO05D004734 0.0e+00 1454.5 1039 72.1
PGSC0003DMG400007132 Solanum tuberosum HOM05D004116 ORTHO05D004734 0.0e+00 1451.0 1025 73.9
PSO013G0369 Papaver somniferum HOM05D004116 ORTHO05D004734 0.0e+00 1445.6 1041 71.3
RcHm_v2.0_Chr5g0047221 Rosa chinensis HOM05D004116 ORTHO05D004734 0.0e+00 1438.7 1003 75.0
Aqoxy3G03559 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 0.0e+00 1429.8 1020 72.2
EL10Ac2g03047 Beta vulgaris HOM05D004116 ORTHO05D004734 0.0e+00 1427.2 1151 66.8
Sopen06g031210 Solanum pennellii HOM05D004116 ORTHO05D004734 0.0e+00 1411.0 1020 71.7
MBI19_g32361_MAGBIO Magnolia biondii HOM05D004116 ORTHO05D004734 0.0e+00 1395.9 1058 70.4
Aqoxy3G01362 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 0.0e+00 1377.8 1022 69.8
Cpa.g.sc14.139 Carica papaya HOM05D004116 ORTHO05D004734 0.0e+00 1357.8 1047 70.3
AUR62018140 Chenopodium quinoa HOM05D004116 ORTHO05D004734 0.0e+00 1323.9 1045 68.1
ECA232G0495 Erigeron canadensis HOM05D004116 ORTHO05D004734 0.0e+00 1313.1 929 74.3
Solyc06g074770.4 Solanum lycopersicum HOM05D004116 ORTHO05D004734 0.0e+00 1293.1 957 70.0
unitig_744.g24002 Utricularia gibba HOM05D004116 ORTHO05D004734 0.0e+00 1270.0 1050 65.4
AUR62034478 Chenopodium quinoa HOM05D004116 ORTHO05D004734 0.0e+00 1253.8 1030 66.4
SHI16441 Sapria himalayana HOM05D004116 ORTHO05D004734 0.0e+00 1239.6 1033 64.8
HPP92_023626 Vanilla planifolia HOM05D004116 ORTHO05D004734 0.0e+00 1236.1 961 66.7
Os03g0427900 Oryza sativa ssp. japonica HOM05D004116 ORTHO05D004734 0.0e+00 1218.0 1024 62.8
ATR0111G012 Amborella trichopoda HOM05D004116 ORTHO05D004734 0.0e+00 1167.1 818 73.8
AagrBONN_evm.TU.Sc2ySwM_340.219 Anthoceros agrestis HOM05D004116 ORTHO05D004734 0.0e+00 1094.3 1015 58.4
Mapoly0052s0078 Marchantia polymorpha HOM05D004116 ORTHO05D004734 0.0e+00 1085.5 1026 56.4
FAN11G2920 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 1081.2 1006 59.8
SMO356G0406 Selaginella moellendorffii HOM05D004116 ORTHO05D004734 6.8e-305 1050.8 1018 54.8
Ah.12g062550 Amaranthus hybridus HOM05D004116 ORTHO05D004734 4.0e-297 1025.0 757 72.0
Pp3c15_20630 Physcomitrium patens HOM05D004116 ORTHO05D004734 4.1e-294 1015.0 1032 54.5
FAN25G2854 Fragaria x ananassa HOM05D004116 ORTHO05D004734 5.6e-291 1004.6 958 59.3
Zm00001eb020370 Zea mays HOM05D004116 ORTHO05D004734 1.5e-280 969.9 709 70.4
Zm00001eb393280 Zea mays HOM05D004116 ORTHO05D004734 2.6e-280 969.1 709 70.1
Hma1.2p1_0604F.1_g187770 Hydrangea macrophylla HOM05D004116 ORTHO05D004734 7.0e-278 961.1 613 83.5
PSO144G0086 Papaver somniferum HOM05D004116 ORTHO05D004734 1.3e-263 913.7 1029 51.3
PSO170G0544 Papaver somniferum HOM05D004116 ORTHO05D004734 3.3e-259 899.0 1035 50.9
PSO325G0009 Papaver somniferum HOM05D004116 ORTHO05D004734 2.9e-255 885.9 1022 51.0
CDE04G3780 Ceratophyllum demersum HOM05D004116 ORTHO05D004734 7.1e-254 881.3 622 73.3
Psat1g069120 Pisum sativum HOM05D004116 ORTHO05D004734 5.3e-233 812.0 484 85.7
Aqoxy3G00661 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 2.1e-229 800.0 556 75.0
Solyc02g088550.4 Solanum lycopersicum HOM05D004116 ORTHO05D004734 1.8e-212 743.8 451 84.7
PSO017G4845 Papaver somniferum HOM05D004116 ORTHO05D004734 2.3e-196 690.3 1034 43.8
FvH4_3g25920 Fragaria vesca HOM05D004116 ORTHO05D004734 2.0e-195 687.2 442 79.2
BcaC04g24243 Brassica carinata HOM05D004116 ORTHO05D004734 8.0e-181 638.6 383 84.1
PSO144G0082 Papaver somniferum HOM05D004116 ORTHO05D004734 8.9e-180 635.2 1014 41.3
FAN16G3124 Fragaria x ananassa HOM05D004116 ORTHO05D004734 6.3e-178 629.0 486 69.1
CDE07G1255 Ceratophyllum demersum HOM05D006464 ORTHO05D007923 2.0e-168 597.4 404 75.2
CBR_g12108 Chara braunii HOM05D004116 ORTHO05D004734 3.3e-166 590.1 517 58.6
PRCOL_00002499 Prasinoderma coloniale HOM05D004116 ORTHO05D004734 2.1e-165 587.4 1053 37.5
Psat1g069040 Pisum sativum HOM05D004116 ORTHO05D004734 3.0e-159 567.0 456 64.7
FvH4_3g25930 Fragaria vesca HOM05D004116 ORTHO05D004734 1.4e-153 548.1 555 56.8
FAN17G0761 Fragaria x ananassa HOM05D004116 ORTHO05D004734 2.9e-146 523.9 375 71.5
Aqoxy3G00662 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 3.8e-146 523.5 415 63.1
FAN09G1300 Fragaria x ananassa HOM05D004116 ORTHO05D004734 5.4e-145 519.6 369 71.8
FAN09G4205 Fragaria x ananassa HOM05D004116 ORTHO05D004734 5.4e-145 519.6 369 71.8
FAN21G0296 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.4e-140 505.0 377 72.1
BcaNung03312 Brassica carinata HOM05D004116 ORTHO05D004734 6.0e-136 489.6 538 55.0
SEGI_13711 Sequoiadendron giganteum HOM05D004116 ORTHO05D004734 6.6e-135 486.1 322 74.8
PSO761G0054 Papaver somniferum HOM05D004116 ORTHO05D004734 4.2e-129 466.8 642 43.6
PSO384G2573 Papaver somniferum HOM05D004116 ORTHO05D004734 5.7e-118 429.9 594 45.1
Cre09.g398350 Chlamydomonas reinhardtii HOM05D004116 ORTHO05D004734 2.0e-115 421.4 1081 31.1
QL02p039616 Quercus lobata HOM05D004116 ORTHO05D004734 1.3e-109 402.1 288 73.6
Ah.12g062560 Amaranthus hybridus HOM05D004116 ORTHO05D004734 9.7e-102 375.9 290 64.5
FAN12G4053 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.7e-90 338.6 507 43.6
Lsat_1_v5_gn_8_41201 Lactuca sativa HOM05D004116 ORTHO05D004734 1.7e-82 312.0 199 79.4
Actinidia17574 Actinidia chinensis HOM05D004116 ORTHO05D004734 6.5e-82 310.1 284 59.9
CBR_g12111 Chara braunii HOM05D004116 ORTHO05D004734 6.3e-77 293.5 525 36.2
FAN21G1378 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.0e-74 286.2 234 66.2
Lsat_1_v5_gn_8_41221 Lactuca sativa HOM05D004116 ORTHO05D004734 5.0e-74 283.9 400 44.8
FAN16G0481 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.4e-68 265.8 225 65.8
PSO478G4129 Papaver somniferum HOM05D004116 ORTHO05D004734 1.7e-66 258.8 423 44.0
Hma1.2p1_1813F.1_g303850 Hydrangea macrophylla HOM05D004116 ORTHO05D004734 1.4e-63 249.2 184 71.7
FAN21G1132 Fragaria x ananassa HOM05D004116 ORTHO05D004734 4.4e-62 244.2 289 49.8
Actinidia17575 Actinidia chinensis HOM05D004116 ORTHO05D004734 1.7e-53 215.7 140 77.1
Actinidia17576 Actinidia chinensis HOM05D000100 ORTHO05D004702 4.7e-48 197.6 125 80.0
Lsat_1_v5_gn_0_45261 Lactuca sativa HOM05D004116 ORTHO05D004734 2.9e-45 188.3 172 62.2
MCO05G368 Micromonas commoda HOM05D004116 ORTHO05D004734 6.4e-45 187.2 197 48.7
Oeu034757.1 Olea europaea HOM05D004116 ORTHO05D004734 1.4e-44 186.0 134 67.2
Psat1g069080 Pisum sativum HOM05D004116 ORTHO05D004734 7.8e-43 180.3 143 67.1
FAN16G0041 Fragaria x ananassa HOM05D004116 ORTHO05D004734 4.1e-36 157.9 132 65.2
PSO675G1667 Papaver somniferum HOM05D004116 ORTHO05D004734 4.6e-35 154.5 172 54.1
TAR622G0429 Trochodendron aralioides HOM05D004116 ORTHO05D004734 4.3e-33 147.9 253 40.3
SalBow6G1256 Salvia bowleyana HOM05D003831 ORTHO05D004440 1.2e-30 139.8 208 40.9
CDE04G3166 Ceratophyllum demersum HOM05D006464 ORTHO05D007923 1.1e-25 123.2 91 67.0
CAN.G111.24 Capsicum annuum HOM05D004116 ORTHO05D004734 1.5e-25 122.9 262 36.3
AL1G40200 Arabidopsis lyrata HOM05D004116 ORTHO05D004734 4.3e-25 121.3 92 67.4
Hund13173 Selenicereus undatus HOM05D000214 ORTHO05D000131 3.4e-14 85.1 55 76.4
Lsat_1_v5_gn_1_20041 Lactuca sativa HOM05D004116 ORTHO05D004734 1.4e-12 79.7 77 55.8
Cre12.g519150 Chlamydomonas reinhardtii HOM05D004874 ORTHO05D006796 5.5e-12 77.8 72 48.6
MCO16G187 Micromonas commoda HOM05D004874 ORTHO05D006796 8.7e-10 70.5 115 37.4


User provided reference genes

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