Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0164761 Rosa chinensis HOM05D004464 ORTHO05D005135 1.8e-99 365.9 183 100.0
FvH4_6g46310 Fragaria vesca HOM05D004464 ORTHO05D005135 1.7e-97 359.4 183 97.8
FAN02G0274 Fragaria x ananassa HOM05D004464 ORTHO05D005135 1.7e-97 359.4 183 97.8
FAN14G2017 Fragaria x ananassa HOM05D004464 ORTHO05D005135 1.7e-97 359.4 183 97.8
FAN05G3637 Fragaria x ananassa HOM05D004464 ORTHO05D005135 1.1e-96 356.7 183 96.7
FAN09G0031 Fragaria x ananassa HOM05D004464 ORTHO05D005135 4.1e-96 354.8 183 96.2
Prupe.3G248300 Prunus persica HOM05D004464 ORTHO05D005135 2.3e-86 322.4 183 85.2
Glyma.10G232700 Glycine max HOM05D004464 ORTHO05D005135 3.8e-86 321.6 183 84.2
Glyma.20G161600 Glycine max HOM05D004464 ORTHO05D005135 3.8e-86 321.6 183 84.2
Lj3g0020854 Lotus japonicus HOM05D004464 ORTHO05D005135 6.5e-86 320.9 183 84.2
Lj4g0017621 Lotus japonicus HOM05D004464 ORTHO05D005135 6.5e-86 320.9 183 84.2
PGR042G1328 Punica granatum HOM05D004464 ORTHO05D005135 1.1e-85 320.1 183 85.2
ClCG07G016070 Citrullus lanatus HOM05D004464 ORTHO05D005135 1.5e-85 319.7 182 85.2
Phvul.007G072900 Phaseolus vulgaris HOM05D004464 ORTHO05D005135 1.9e-85 319.3 183 84.7
CDE10G0456 Ceratophyllum demersum HOM05D004464 ORTHO05D005135 3.3e-85 318.5 183 83.1
Actinidia26272 Actinidia chinensis HOM05D004464 ORTHO05D005135 7.2e-85 317.4 183 83.6
Eucgr.J01412 Eucalyptus grandis HOM05D004464 ORTHO05D005135 9.5e-85 317.0 182 84.1
MD09G1075700 Malus domestica HOM05D004464 ORTHO05D005135 1.6e-84 316.2 183 84.2
GSVIVG01036537001 Vitis vinifera HOM05D004464 ORTHO05D005135 1.6e-84 316.2 183 83.6
Actinidia17608 Actinidia chinensis HOM05D004464 ORTHO05D005135 2.8e-84 315.5 183 83.1
CsaV3_4G010040 Cucumis sativus L. HOM05D004464 ORTHO05D005135 2.8e-84 315.5 182 83.5
TAR371G0146 Trochodendron aralioides HOM05D004464 ORTHO05D005135 3.6e-84 315.1 183 83.1
Ciclev10012892m.g Citrus clementina HOM05D004464 ORTHO05D005135 4.7e-84 314.7 183 83.1
MD17G1066400 Malus domestica HOM05D004464 ORTHO05D005135 6.1e-84 314.3 183 83.6
CDE10G0562 Ceratophyllum demersum HOM05D004464 ORTHO05D005135 8.0e-84 313.9 183 83.6
Dinv34904 Davidia involucrata HOM05D004464 ORTHO05D005135 8.0e-84 313.9 183 83.6
Duzib150G0689 Durio zibethinus HOM05D004464 ORTHO05D005135 8.0e-84 313.9 183 83.6
Hma1.2p1_1837F.1_g304810 Hydrangea macrophylla HOM05D004464 ORTHO05D005135 8.0e-84 313.9 183 83.6
Sed0009719 Sechium edule HOM05D004464 ORTHO05D005135 1.0e-83 313.5 182 83.0
HanXRQChr15g0490131 Helianthus annuus HOM05D004464 ORTHO05D005135 2.3e-83 312.4 181 83.4
PGSC0003DMG400001469 Solanum tuberosum HOM05D004464 ORTHO05D005135 2.3e-83 312.4 183 82.5
TPR.G23462 Trifolium pratense HOM05D004464 ORTHO05D005135 2.3e-83 312.4 183 79.8
Gohir.D05G003500 Gossypium hirsutum HOM05D004464 ORTHO05D005135 3.0e-83 312.0 183 82.0
Gorai.009G003100 Gossypium raimondii HOM05D004464 ORTHO05D005135 3.0e-83 312.0 183 82.0
Sopen02g034060 Solanum pennellii HOM05D004464 ORTHO05D005135 3.0e-83 312.0 183 82.5
Atru.chr12.814 Acer truncatum HOM05D004464 ORTHO05D005135 4.0e-83 311.6 183 80.9
VMungo0720G0545 Vigna mungo HOM05D004464 ORTHO05D005135 4.0e-83 311.6 183 83.6
Dinv33871 Davidia involucrata HOM05D004464 ORTHO05D005135 5.2e-83 311.2 183 82.5
Nn4g23543 Nelumbo nucifera HOM05D004464 ORTHO05D005135 5.2e-83 311.2 183 82.0
TPR.G29907 Trifolium pratense HOM05D004464 ORTHO05D005135 5.2e-83 311.2 183 79.8
Gohir.A05G003100 Gossypium hirsutum HOM05D004464 ORTHO05D005135 6.8e-83 310.8 183 82.0
arahy.Tifrunner.gnm1.ann1.6V5APJ Arachis hypogaea HOM05D004464 ORTHO05D005135 8.9e-83 310.5 183 82.0
arahy.Tifrunner.gnm1.ann1.AQQ1ZC Arachis hypogaea HOM05D004464 ORTHO05D005135 8.9e-83 310.5 183 82.0
Solyc02g089280.3 Solanum lycopersicum HOM05D004464 ORTHO05D005135 8.9e-83 310.5 183 82.0
Hund16239 Selenicereus undatus HOM05D004464 ORTHO05D005135 1.2e-82 310.1 183 80.9
Nitab4.5_0001339g0030 Nicotiana tabacum HOM05D004464 ORTHO05D005135 1.5e-82 309.7 183 82.0
Thecc.01G298100 Theobroma cacao HOM05D004464 ORTHO05D005135 1.5e-82 309.7 183 82.0
MBI15_g04989_MAGBIO Magnolia biondii HOM05D004464 ORTHO05D005135 2.0e-82 309.3 183 82.0
MBI15_g11301_MAGBIO Magnolia biondii HOM05D004464 ORTHO05D005135 2.0e-82 309.3 183 82.0
COL.COLO4_21291 Corchorus olitorius HOM05D004464 ORTHO05D005135 2.6e-82 308.9 183 82.5
Lalb_Chr16g0389591 Lupinus albus HOM05D004464 ORTHO05D005135 2.6e-82 308.9 183 82.0
Medtr8g102530 Medicago truncatula HOM05D004464 ORTHO05D005135 2.6e-82 308.9 183 79.8
Manes.01G100100 Manihot esculenta HOM05D004464 ORTHO05D005135 4.4e-82 308.1 183 80.9
Peaxi162Scf01039g00131 Petunia axillaris HOM05D004464 ORTHO05D005135 9.8e-82 307.0 183 81.4
SalBow1G0807 Salvia bowleyana HOM05D004464 ORTHO05D005135 1.7e-81 306.2 183 80.9
TWI36G0525 Tripterygium wilfordii HOM05D004464 ORTHO05D005135 2.2e-81 305.8 183 78.1
TWI36G0787 Tripterygium wilfordii HOM05D004464 ORTHO05D005135 2.2e-81 305.8 183 78.1
Migut.K00882 Erythranthe guttata HOM05D004464 ORTHO05D005135 2.8e-81 305.4 181 81.8
Sabra17G0087000 Salix brachista HOM05D004464 ORTHO05D005135 2.8e-81 305.4 183 79.8
Psat7g017000 Pisum sativum HOM05D004464 ORTHO05D005135 4.9e-81 304.7 183 79.8
Sc07g0002150 Simmondsia chinensis HOM05D004464 ORTHO05D005135 4.9e-81 304.7 181 81.8
CANSAT11G0238 Cannabis sativa HOM05D004464 ORTHO05D005135 8.3e-81 303.9 183 79.8
MSTRG.15432 Avicennia marina HOM05D004464 ORTHO05D005135 1.1e-80 303.5 183 80.3
Potri.017G101200 Populus trichocarpa HOM05D004464 ORTHO05D005135 1.1e-80 303.5 183 79.8
SGA_v2.0_scaffold148G36455 Striga asiatica HOM05D004464 ORTHO05D005135 1.1e-80 303.5 183 80.3
TWI75G1858 Tripterygium wilfordii HOM05D004464 ORTHO05D005135 1.4e-80 303.1 183 77.6
CANSAT64G2552 Cannabis sativa HOM05D004464 ORTHO05D005135 4.1e-80 301.6 183 78.7
ATR0743G033 Amborella trichopoda HOM05D004464 ORTHO05D005135 9.2e-80 300.4 183 78.1
EL10Ac2g04433 Beta vulgaris HOM05D004464 ORTHO05D005135 9.2e-80 300.4 183 78.7
CAN.G497.54 Capsicum annuum HOM05D004464 ORTHO05D005135 1.2e-79 300.1 183 79.2
AUR62023152 Chenopodium quinoa HOM05D004464 ORTHO05D005135 2.0e-79 299.3 183 78.7
Potri.004G113600 Populus trichocarpa HOM05D004464 ORTHO05D005135 2.0e-79 299.3 183 78.1
SGA_v2.0_scaffold163G37992 Striga asiatica HOM05D004464 ORTHO05D005135 2.0e-79 299.3 183 80.3
Ah.16g101000 Amaranthus hybridus HOM05D004464 ORTHO05D005135 2.7e-79 298.9 183 78.7
CSS0016516 Camellia sinensis var. sinensis HOM05D004464 ORTHO05D005135 3.5e-79 298.5 183 78.1
Sabra10G0012000 Salix brachista HOM05D004464 ORTHO05D005135 3.5e-79 298.5 190 76.8
CSS0037173 Camellia sinensis var. sinensis HOM05D004464 ORTHO05D005135 4.5e-79 298.1 183 77.6
AUR62009474 Chenopodium quinoa HOM05D004464 ORTHO05D005135 5.9e-79 297.7 183 78.1
THA.LOC104820981 Tarenaya hassleriana HOM05D004464 ORTHO05D005135 7.8e-79 297.4 181 79.6
Cc07_g04530 Coffea canephora HOM05D004464 ORTHO05D005135 1.0e-78 297.0 183 78.1
vmacro18124 Vaccinium macrocarpon HOM05D004464 ORTHO05D005135 1.3e-78 296.6 182 81.3
DCAR_016093 Daucus carota HOM05D004464 ORTHO05D005135 2.3e-78 295.8 183 76.0
Aa31LG2G910 Aethionema arabicum HOM05D004464 ORTHO05D005135 8.6e-78 293.9 181 77.3
Aa31LG11G13830 Aethionema arabicum HOM05D004464 ORTHO05D005135 1.1e-77 293.5 181 77.3
BcaB01g05028 Brassica carinata HOM05D004464 ORTHO05D005135 1.1e-77 293.5 181 77.3
BcaNung02202 Brassica carinata HOM05D004464 ORTHO05D005135 1.1e-77 293.5 181 77.3
unitig_0.g1789 Utricularia gibba HOM05D004464 ORTHO05D005135 1.9e-77 292.7 182 76.9
Sp6g28370 Schrenkiella parvula HOM05D004464 ORTHO05D005135 2.5e-77 292.4 181 76.8
AL6G26590 Arabidopsis lyrata HOM05D004464 ORTHO05D005135 4.3e-77 291.6 181 78.5
Ah.10g038200 Amaranthus hybridus HOM05D004464 ORTHO05D005135 5.6e-77 291.2 183 77.0
CiPaw.06G059900 Carya illinoinensis HOM05D004464 ORTHO05D005135 5.6e-77 291.2 184 76.6
QL02p065152 Quercus lobata HOM05D004464 ORTHO05D005135 5.6e-77 291.2 184 77.2
A03p07340 Brassica napus HOM05D004464 ORTHO05D005135 7.3e-77 290.8 181 75.7
C03p08530 Brassica napus HOM05D004464 ORTHO05D005135 7.3e-77 290.8 181 75.7
QL09p044371 Quercus lobata HOM05D004464 ORTHO05D005135 7.3e-77 290.8 184 76.6
BcaC03g18447 Brassica carinata HOM05D004464 ORTHO05D005135 9.5e-77 290.4 181 77.3
A02p03200 Brassica napus HOM05D004464 ORTHO05D005135 9.5e-77 290.4 181 77.3
C02p07950 Brassica napus HOM05D004464 ORTHO05D005135 9.5e-77 290.4 181 77.3
BolC2t06718H Brassica oleracea HOM05D004464 ORTHO05D005135 9.5e-77 290.4 181 77.3
BraA02t05291Z Brassica rapa HOM05D004464 ORTHO05D005135 9.5e-77 290.4 181 77.3
AT5G15750 Arabidopsis thaliana HOM05D004464 ORTHO05D005135 1.2e-76 290.0 181 76.8
BraA03t10058Z Brassica rapa HOM05D004464 ORTHO05D005135 1.6e-76 289.7 181 75.1
Aqoxy3G02935 Aquilegia oxysepala HOM05D004464 ORTHO05D005135 2.1e-76 289.3 183 75.4
CiPaw.15G080600 Carya illinoinensis HOM05D004464 ORTHO05D005135 2.1e-76 289.3 184 76.1
Carub.0004s0609 Capsella rubella HOM05D004464 ORTHO05D005135 4.0e-75 285.0 181 76.2
Cfa007699 Carpinus fangiana HOM05D004464 ORTHO05D005135 6.8e-75 284.3 184 75.5
Carub.0006s1390 Capsella rubella HOM05D004464 ORTHO05D005135 1.2e-74 283.5 181 76.2
CARHR197580 Cardamine hirsuta HOM05D004464 ORTHO05D005135 3.4e-74 282.0 181 74.0
PSO017G3712 Papaver somniferum HOM05D004464 ORTHO05D005135 4.4e-74 281.6 183 74.9
PSO198G0095 Papaver somniferum HOM05D004464 ORTHO05D005135 2.2e-73 279.3 183 73.8
PSO782G4050 Papaver somniferum HOM05D004464 ORTHO05D005135 2.9e-73 278.9 183 73.8
Oeu033412.2 Olea europaea HOM05D004464 ORTHO05D005135 7.8e-71 270.8 228 61.4
Pp3c13_7750 Physcomitrium patens HOM05D004464 ORTHO05D005135 7.8e-71 270.8 183 67.2
MCO12G368 Micromonas commoda HOM05D004464 ORTHO05D005135 3.0e-70 268.9 182 69.8
Ca_17363_v3 Cicer arietinum L. HOM05D002451 ORTHO05D007901 3.9e-70 268.5 155 81.9
SMO089G0012 Selaginella moellendorffii HOM05D004464 ORTHO05D005135 5.0e-70 268.1 183 66.7
SHI12226 Sapria himalayana HOM05D004464 ORTHO05D005135 6.6e-70 267.7 184 66.8
Mapoly0007s0196 Marchantia polymorpha HOM05D004464 ORTHO05D005135 8.6e-70 267.3 183 66.7
DCAR_010215 Daucus carota HOM05D004464 ORTHO05D005135 1.9e-69 266.2 219 62.1
ECA285G0012 Erigeron canadensis HOM05D004464 ORTHO05D005135 2.5e-69 265.8 185 69.2
Duzib170G0747 Durio zibethinus HOM05D004464 ORTHO05D005135 1.8e-67 259.6 183 73.2
Nitab4.5_0009887g0020 Nicotiana tabacum HOM05D004464 ORTHO05D005135 1.8e-67 259.6 152 81.6
TAR629G1609 Trochodendron aralioides HOM05D004464 ORTHO05D005135 1.5e-66 256.5 154 80.5
Glyma.16G058000 Glycine max HOM05D004464 ORTHO05D005135 5.8e-66 254.6 152 80.9
Cre03.g170750 Chlamydomonas reinhardtii HOM05D004464 ORTHO05D005135 7.5e-66 254.2 181 64.6
Atru.chr5.3325 Acer truncatum HOM05D004464 ORTHO05D005135 5.4e-64 248.1 183 67.8
Lsat_1_v5_gn_3_96881 Lactuca sativa HOM05D004464 ORTHO05D005135 1.7e-62 243.0 181 69.6
Haze_14377 Corylus avellana HOM05D004464 ORTHO05D005135 2.1e-60 236.1 188 66.5
Zm00001eb280020 Zea mays HOM05D004464 ORTHO05D005135 2.3e-59 232.6 181 64.6
Thhalv10014794m.g Eutrema salsugineum HOM05D004464 ORTHO05D005135 1.2e-58 230.3 138 79.7
PSO478G4867 Papaver somniferum HOM05D004464 ORTHO05D005135 7.5e-58 227.6 183 64.5
SEGI_12415 Sequoiadendron giganteum HOM05D004464 ORTHO05D005135 2.3e-54 216.1 138 72.5
Nn3g17540 Nelumbo nucifera HOM05D004464 ORTHO05D005135 4.7e-52 208.4 183 60.7
HPP92_025702 Vanilla planifolia HOM05D004464 ORTHO05D005135 8.1e-52 207.6 155 66.5
SMO302G0020 Selaginella moellendorffii HOM05D004464 ORTHO05D005135 1.2e-50 203.8 175 57.7
Gorai.007G357000 Gossypium raimondii HOM05D004464 ORTHO05D005135 2.2e-49 199.5 179 60.3
AagrBONN_evm.TU.Sc2ySwM_362.1773 Anthoceros agrestis HOM05D004464 ORTHO05D005135 4.9e-49 198.4 152 61.8
Cfa025099 Carpinus fangiana HOM05D002539 ORTHO05D005135 8.4e-49 197.6 186 51.6
BcaNung00660 Brassica carinata HOM05D004464 ORTHO05D005135 1.2e-47 193.7 158 60.1
MELO3C000036.2 Cucumis melo HOM05D004464 ORTHO05D005135 1.2e-47 193.7 140 71.4
Cpa.g.sc14.239 Carica papaya HOM05D004464 ORTHO05D005135 4.3e-45 185.3 102 88.2
Rhsim08G0077600 Rhododendron simsii HOM05D004464 ORTHO05D005135 2.1e-44 183.0 102 86.3
Gorai.007G356600 Gossypium raimondii HOM05D004464 ORTHO05D005135 2.2e-41 172.9 100 84.0
Gorai.007G357200 Gossypium raimondii HOM05D004464 ORTHO05D005135 2.9e-41 172.6 99 82.8
Lju361C7T5 Lonicera japonica HOM05D004464 ORTHO05D005135 2.9e-41 172.6 100 81.0
BcaNung00661 Brassica carinata HOM05D004464 ORTHO05D005135 3.2e-40 169.1 158 55.1
CBR_g26031 Chara braunii HOM05D004464 ORTHO05D005135 4.3e-37 158.7 146 53.4
AagrBONN_evm.TU.Sc2ySwM_344.90 Anthoceros agrestis HOM05D004464 ORTHO05D005135 3.6e-36 155.6 134 58.2
ECA246G0747 Erigeron canadensis HOM05D004464 ORTHO05D005135 1.4e-35 153.7 105 68.6
BolC3t13358H Brassica oleracea HOM05D004464 ORTHO05D005135 2.4e-35 152.9 106 66.0
Oeu003765.1 Olea europaea HOM05D007961 ORTHO05D005135 3.9e-30 135.6 78 83.3
Lju361A7T16 Lonicera japonica HOM05D004464 ORTHO05D005135 1.9e-29 133.3 81 79.0
BolC1t00394H Brassica oleracea HOM05D004464 ORTHO05D005135 3.7e-28 129.0 99 59.6
MELO3C001556.2 Cucumis melo HOM05D004464 ORTHO05D005135 3.7e-28 129.0 81 76.5
AagrBONN_evm.TU.Sc2ySwM_368.3154 Anthoceros agrestis HOM05D004464 ORTHO05D005135 2.4e-27 126.3 101 61.4
SHI12394 Sapria himalayana HOM05D004464 ORTHO05D005135 2.7e-23 112.8 106 51.9
SHI40216 Sapria himalayana HOM05D004464 ORTHO05D005135 4.8e-20 102.1 68 64.7
MELO3C000032.2 Cucumis melo HOM05D004464 ORTHO05D005135 7.6e-18 94.7 52 88.5
Thecc.01G298200 Theobroma cacao HOM05D004464 ORTHO05D005135 1.1e-16 90.9 106 49.1
C09p61360 Brassica napus HOM05D004464 ORTHO05D005135 3.0e-14 82.8 187 34.8
BcaC04g18941 Brassica carinata HOM05D004464 ORTHO05D005135 6.1e-07 58.5 181 29.8
BolC9t58977H Brassica oleracea HOM05D004464 ORTHO05D005135 2.3e-06 56.6 81 42.0


User provided reference genes

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