Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0162471 Rosa chinensis HOM05D005082 ORTHO05D006474 1.3e-102 376.3 183 100.0
Prupe.8G016800 Prunus persica HOM05D005082 ORTHO05D006474 7.5e-58 227.6 205 61.5
FvH4_2g14910 Fragaria vesca HOM05D005082 ORTHO05D006474 5.4e-56 221.5 199 61.3
FAN24G2999 Fragaria x ananassa HOM05D005082 ORTHO05D006474 5.4e-56 221.5 199 61.3
RcHm_v2.0_Chr6g0277491 Rosa chinensis HOM05D005082 ORTHO05D006474 5.4e-56 221.5 199 62.3
MD05G1011800 Malus domestica HOM05D005082 ORTHO05D006474 9.2e-56 220.7 199 61.3
QL11p056821 Quercus lobata HOM05D005082 ORTHO05D006474 9.2e-56 220.7 199 61.8
FAN20G1299 Fragaria x ananassa HOM05D005082 ORTHO05D006474 1.6e-55 219.9 199 60.8
Atru.BG.54.p Acer truncatum HOM05D005082 ORTHO05D006474 2.1e-55 219.5 199 60.8
Atru.chr5.3580 Acer truncatum HOM05D005082 ORTHO05D006474 2.1e-55 219.5 199 60.8
Ciclev10028098m.g Citrus clementina HOM05D005082 ORTHO05D006474 2.1e-55 219.5 199 60.8
Manes.02G091600 Manihot esculenta HOM05D005082 ORTHO05D006474 2.1e-55 219.5 199 61.3
Cc09_g10910 Coffea canephora HOM05D005082 ORTHO05D006474 7.8e-55 217.6 199 60.8
CiPaw.05G095000 Carya illinoinensis HOM05D005082 ORTHO05D006474 1.0e-54 217.2 199 61.3
FAN15G2332 Fragaria x ananassa HOM05D005082 ORTHO05D006474 1.0e-54 217.2 210 58.1
TWI59G1375 Tripterygium wilfordii HOM05D005082 ORTHO05D006474 1.0e-54 217.2 199 60.8
GSVIVG01023855001 Vitis vinifera HOM05D005082 ORTHO05D006474 1.3e-54 216.9 205 58.5
Rhsim04G0008200 Rhododendron simsii HOM05D005082 ORTHO05D006474 1.7e-54 216.5 202 58.4
vmacro16288 Vaccinium macrocarpon HOM05D005082 ORTHO05D006474 1.7e-54 216.5 199 59.3
Cfa005396 Carpinus fangiana HOM05D005082 ORTHO05D006474 2.3e-54 216.1 199 60.3
ClCG02G003240 Citrullus lanatus HOM05D005082 ORTHO05D006474 2.3e-54 216.1 199 60.3
CsaV3_7G002150 Cucumis sativus L. HOM05D005082 ORTHO05D006474 2.3e-54 216.1 199 60.3
PGR042G3506 Punica granatum HOM05D005082 ORTHO05D006474 3.9e-54 215.3 199 59.3
Sed0020521 Sechium edule HOM05D005082 ORTHO05D006474 3.9e-54 215.3 199 60.3
Thecc.02G148100 Theobroma cacao HOM05D005082 ORTHO05D006474 3.9e-54 215.3 199 60.3
Duzib248G1564 Durio zibethinus HOM05D005082 ORTHO05D006474 5.1e-54 214.9 199 60.3
unitig_21.g20422 Utricularia gibba HOM05D005082 ORTHO05D006474 5.1e-54 214.9 199 59.8
Ah.01g017700 Amaranthus hybridus HOM05D005082 ORTHO05D006474 6.6e-54 214.5 199 59.3
Haze_01956 Corylus avellana HOM05D005082 ORTHO05D006474 6.6e-54 214.5 199 59.8
DCAR_001519 Daucus carota HOM05D005082 ORTHO05D006474 6.6e-54 214.5 199 59.3
Dinv41859 Davidia involucrata HOM05D005082 ORTHO05D006474 6.6e-54 214.5 199 60.3
MD10G1011800 Malus domestica HOM05D005082 ORTHO05D006474 6.6e-54 214.5 200 61.0
Sc08g0002050 Simmondsia chinensis HOM05D005082 ORTHO05D006474 8.6e-54 214.2 199 60.3
DCAR_006224 Daucus carota HOM05D005082 ORTHO05D006474 1.1e-53 213.8 199 59.8
Actinidia20586 Actinidia chinensis HOM05D005082 ORTHO05D006474 1.5e-53 213.4 199 59.8
Ca_25889_v3 Cicer arietinum L. HOM05D005082 ORTHO05D006474 1.5e-53 213.4 198 59.6
Lj3g0023171 Lotus japonicus HOM05D005082 ORTHO05D006474 1.5e-53 213.4 198 59.6
Glyma.03G097900 Glycine max HOM05D005082 ORTHO05D006474 1.9e-53 213.0 198 59.1
SalBow1G4726 Salvia bowleyana HOM05D005082 ORTHO05D006474 1.9e-53 213.0 199 59.3
BcaB02g09792 Brassica carinata HOM05D005082 ORTHO05D006474 3.3e-53 212.2 199 58.8
BcaC01g02661 Brassica carinata HOM05D005082 ORTHO05D006474 3.3e-53 212.2 199 58.8
A06p30760 Brassica napus HOM05D005082 ORTHO05D006474 3.3e-53 212.2 199 58.8
C03p62220 Brassica napus HOM05D005082 ORTHO05D006474 3.3e-53 212.2 199 58.8
BolC3t18485H Brassica oleracea HOM05D005082 ORTHO05D006474 3.3e-53 212.2 199 58.8
Carub.0008s2483 Capsella rubella HOM05D005082 ORTHO05D006474 3.3e-53 212.2 199 58.3
Potri.009G169700 Populus trichocarpa HOM05D005082 ORTHO05D006474 3.3e-53 212.2 199 59.3
Sabra04G0140300 Salix brachista HOM05D005082 ORTHO05D006474 3.3e-53 212.2 199 59.3
Aa31LG1G17860 Aethionema arabicum HOM05D005082 ORTHO05D006474 4.3e-53 211.8 199 58.3
AL8G41310 Arabidopsis lyrata HOM05D005082 ORTHO05D006474 4.3e-53 211.8 199 58.3
Gorai.002G014600 Gossypium raimondii HOM05D005082 ORTHO05D006474 4.3e-53 211.8 199 59.3
CAN.G1645.8 Capsicum annuum HOM05D005082 ORTHO05D006474 5.6e-53 211.5 199 58.8
MELO3C015693.2 Cucumis melo HOM05D005082 ORTHO05D006474 5.6e-53 211.5 199 58.8
MBI01_g28404_MAGBIO Magnolia biondii HOM05D005082 ORTHO05D006474 5.6e-53 211.5 199 59.8
arahy.Tifrunner.gnm1.ann1.44ERQ5 Arachis hypogaea HOM05D005082 ORTHO05D006474 7.3e-53 211.1 223 54.7
arahy.Tifrunner.gnm1.ann1.M18VWQ Arachis hypogaea HOM05D005082 ORTHO05D006474 7.3e-53 211.1 223 54.7
MSTRG.16959 Avicennia marina HOM05D005082 ORTHO05D006474 7.3e-53 211.1 199 57.3
CARHR277960 Cardamine hirsuta HOM05D005082 ORTHO05D006474 7.3e-53 211.1 199 58.3
Sp2g27120 Schrenkiella parvula HOM05D005082 ORTHO05D006474 7.3e-53 211.1 199 58.3
TPR.G17355 Trifolium pratense HOM05D005082 ORTHO05D006474 7.3e-53 211.1 198 59.1
Medtr8g009900 Medicago truncatula HOM05D005082 ORTHO05D006474 9.5e-53 210.7 198 59.1
Hund06352 Selenicereus undatus HOM05D005082 ORTHO05D006474 9.5e-53 210.7 199 58.8
THA.LOC104800058 Tarenaya hassleriana HOM05D005082 ORTHO05D006474 9.5e-53 210.7 199 58.3
Cpa.g.c29182.1 Carica papaya HOM05D005082 ORTHO05D006474 1.2e-52 210.3 199 58.8
Gohir.D01G012800 Gossypium hirsutum HOM05D005082 ORTHO05D006474 1.2e-52 210.3 199 58.8
Lalb_Chr07g0194811 Lupinus albus HOM05D005082 ORTHO05D006474 1.2e-52 210.3 198 58.6
Peaxi162Scf00362g00137 Petunia axillaris HOM05D005082 ORTHO05D006474 1.2e-52 210.3 199 58.3
QL04p064927 Quercus lobata HOM05D005082 ORTHO05D006474 1.2e-52 210.3 215 56.3
AT5G64050 Arabidopsis thaliana HOM05D005082 ORTHO05D006474 1.6e-52 209.9 199 57.8
Solyc01g112290.4 Solanum lycopersicum HOM05D005082 ORTHO05D006474 1.6e-52 209.9 202 56.9
TAR628G0288 Trochodendron aralioides HOM05D005082 ORTHO05D006474 1.6e-52 209.9 199 59.8
Eucgr.H05005 Eucalyptus grandis HOM05D005082 ORTHO05D006474 2.1e-52 209.5 199 57.8
Lj5C170T16 Lonicera japonica HOM05D005082 ORTHO05D006474 2.1e-52 209.5 212 55.7
Lalb_Chr12g0210191 Lupinus albus HOM05D005082 ORTHO05D006474 2.1e-52 209.5 198 59.1
AUR62013197 Chenopodium quinoa HOM05D005082 ORTHO05D006474 2.8e-52 209.1 199 57.8
Sopen01g054400 Solanum pennellii HOM05D005082 ORTHO05D006474 3.6e-52 208.8 202 56.4
Gohir.A01G011600 Gossypium hirsutum HOM05D005082 ORTHO05D006474 4.7e-52 208.4 199 58.3
Thhalv10003868m.g Eutrema salsugineum HOM05D005082 ORTHO05D006474 6.2e-52 208.0 199 56.8
EL10Ac9g21557 Beta vulgaris HOM05D005082 ORTHO05D006474 8.1e-52 207.6 199 57.8
Glyma.07G124000 Glycine max HOM05D005082 ORTHO05D006474 1.1e-51 207.2 198 58.1
Lsat_1_v5_gn_8_119500 Lactuca sativa HOM05D005082 ORTHO05D006474 1.1e-51 207.2 199 57.8
AUR62010207 Chenopodium quinoa HOM05D005082 ORTHO05D006474 1.4e-51 206.8 199 57.3
HanXRQChr14g0455171 Helianthus annuus HOM05D005082 ORTHO05D006474 1.4e-51 206.8 199 57.8
ATR0605G166 Amborella trichopoda HOM05D005082 ORTHO05D006474 1.8e-51 206.5 199 56.8
VMungo0331G1808 Vigna mungo HOM05D005082 ORTHO05D006474 1.8e-51 206.5 198 58.1
CDE06G2564 Ceratophyllum demersum HOM05D005082 ORTHO05D006474 3.1e-51 205.7 199 57.8
Oeu006114.1 Olea europaea HOM05D005082 ORTHO05D006474 3.1e-51 205.7 199 57.3
PSO210G0895 Papaver somniferum HOM05D005082 ORTHO05D006474 3.1e-51 205.7 199 57.3
PSO675G0919 Papaver somniferum HOM05D005082 ORTHO05D006474 5.2e-51 204.9 199 56.8
Aqoxy6G02995 Aquilegia oxysepala HOM05D005082 ORTHO05D006474 6.8e-51 204.5 199 57.3
Os02g0121000 Oryza sativa ssp. japonica HOM05D005082 ORTHO05D006474 6.8e-51 204.5 199 56.8
Phvul.010G038400 Phaseolus vulgaris HOM05D005082 ORTHO05D006474 6.8e-51 204.5 198 57.6
Migut.B00003 Erythranthe guttata HOM05D005082 ORTHO05D006474 1.2e-50 203.8 199 56.8
ECA233G3220 Erigeron canadensis HOM05D005082 ORTHO05D006474 2.0e-50 203.0 199 56.8
SEGI_01300 Sequoiadendron giganteum HOM05D005082 ORTHO05D006474 3.4e-50 202.2 202 55.4
Psat4g215760 Pisum sativum HOM05D005082 ORTHO05D006474 2.7e-47 192.6 189 56.6
SGA_v2.0_scaffold5G02667 Striga asiatica HOM05D005082 ORTHO05D006474 1.0e-46 190.7 165 60.6
Psat6g037120 Pisum sativum HOM05D005082 ORTHO05D006474 1.7e-46 189.9 175 60.0
COL.COLO4_03850 Corchorus olitorius HOM05D005082 ORTHO05D006474 1.9e-45 186.4 199 55.3
BraA06t26018Z Brassica rapa HOM05D005082 ORTHO05D006474 8.1e-44 181.0 217 48.8
Mapoly0005s0181 Marchantia polymorpha HOM05D005082 ORTHO05D006474 1.4e-43 180.3 200 50.5
AagrBONN_evm.TU.Sc2ySwM_117.3203 Anthoceros agrestis HOM05D005082 ORTHO05D006474 3.1e-43 179.1 206 49.0
SMO134G0063 Selaginella moellendorffii HOM05D005082 ORTHO05D006474 7.6e-42 174.5 203 47.8
FAN27G0598 Fragaria x ananassa HOM05D005082 ORTHO05D006474 9.9e-42 174.1 185 54.6
Lj9C409G5 Lonicera japonica HOM05D005082 ORTHO05D006474 1.7e-41 173.3 227 48.5
Pp3c1_10010 Physcomitrium patens HOM05D005082 ORTHO05D006474 1.7e-41 173.3 198 49.0
Dinv14185 Davidia involucrata HOM05D005082 ORTHO05D006474 4.2e-40 168.7 175 54.3
CSS0015047 Camellia sinensis var. sinensis HOM05D005082 ORTHO05D006474 9.3e-40 167.5 199 51.8
CBR_g25940 Chara braunii HOM05D005082 ORTHO05D006474 9.3e-40 167.5 200 46.5
Nitab4.5_0001220g0040 Nicotiana tabacum HOM05D005082 ORTHO05D006474 2.5e-37 159.5 175 52.6
Cre07.g313700 Chlamydomonas reinhardtii HOM05D005082 ORTHO05D006474 3.3e-37 159.1 202 44.1
MCO11G616 Micromonas commoda HOM05D005082 ORTHO05D006474 5.6e-37 158.3 200 44.0
Sed0003916 Sechium edule HOM05D005082 ORTHO05D006474 1.3e-36 157.1 175 52.6
PRCOL_00001874 Prasinoderma coloniale HOM05D005082 ORTHO05D006474 3.6e-36 155.6 200 43.0
Nitab4.5_0010601g0010 Nicotiana tabacum HOM05D005082 ORTHO05D006474 1.2e-34 150.6 143 58.0
Duzib052G0849 Durio zibethinus HOM05D005082 ORTHO05D006474 9.3e-32 141.0 187 50.3
Duzib132G0508 Durio zibethinus HOM05D005082 ORTHO05D006474 3.5e-31 139.0 120 64.2
Zm00001eb208250 Zea mays HOM05D005082 ORTHO05D006474 7.1e-24 114.8 104 59.6
Zm00001eb230310 Zea mays HOM05D005082 ORTHO05D006474 2.7e-23 112.8 104 58.7
HanXRQChr14g0432441 Helianthus annuus HOM05D005082 ORTHO05D006474 1.5e-21 107.1 104 55.8
Haze_26742 Corylus avellana HOM05D005082 ORTHO05D006474 2.2e-17 93.2 198 30.8
Zm00001eb428990 Zea mays HOM05D005082 ORTHO05D050782 8.7e-14 81.3 43 86.0
SalBow6G7034 Salvia bowleyana HOM05D005082 ORTHO05D050782 6.9e-11 71.6 41 78.0
Cfa023769 Carpinus fangiana HOM05D005082 ORTHO05D006474 4.6e-07 58.9 211 24.2
Haze_26758 Corylus avellana HOM05D005082 ORTHO05D006474 6.1e-07 58.5 195 27.7
HPP92_019666 Vanilla planifolia HOM05D005082 ORTHO05D006474 8.8e-06 54.7 31 80.6


User provided reference genes

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