Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0152561 Rosa chinensis HOM05D006642 ORTHO05D008856 2.4e-174 616.3 593 100.0
FAN02G0564 Fragaria x ananassa HOM05D006642 ORTHO05D008856 9.1e-145 518.1 602 91.7
FAN05G5081 Fragaria x ananassa HOM05D006642 ORTHO05D008856 2.0e-144 516.9 598 92.1
FvH4_6g38970 Fragaria vesca HOM05D006642 ORTHO05D008856 1.9e-142 510.4 605 90.9
FAN14G1916 Fragaria x ananassa HOM05D006642 ORTHO05D008856 1.9e-142 510.4 605 90.9
MD09G1145700 Malus domestica HOM05D006642 ORTHO05D008856 6.7e-132 475.3 594 84.2
Prupe.3G180100 Prunus persica HOM05D006642 ORTHO05D008856 1.1e-131 474.6 593 84.5
CANSAT64G1219 Cannabis sativa HOM05D006642 ORTHO05D008856 1.1e-110 404.8 334 79.3
Cfa023538 Carpinus fangiana HOM05D006642 ORTHO05D008856 2.0e-107 394.0 335 78.5
ClCG11G016650 Citrullus lanatus HOM05D006642 ORTHO05D008856 1.7e-106 391.0 334 82.0
Sed0004539 Sechium edule HOM05D006642 ORTHO05D008856 6.3e-106 389.0 335 76.4
Ciclev10014674m.g Citrus clementina HOM05D006642 ORTHO05D008856 1.4e-105 387.9 334 76.3
CsaV3_4G032160 Cucumis sativus L. HOM05D006642 ORTHO05D008856 4.1e-105 386.3 334 81.1
CSS0001521 Camellia sinensis var. sinensis HOM05D006642 ORTHO05D008856 1.2e-104 384.8 336 75.9
CSS0049788 Camellia sinensis var. sinensis HOM05D006642 ORTHO05D008856 1.2e-104 384.8 336 75.9
PGR142G3441 Punica granatum HOM05D006642 ORTHO05D008856 5.0e-103 379.4 334 76.0
Atru.chr6.2750 Acer truncatum HOM05D006642 ORTHO05D008856 8.6e-103 378.6 334 75.7
Manes.09G006600 Manihot esculenta HOM05D006642 ORTHO05D008856 5.6e-102 375.9 334 74.9
MSTRG.6613 Avicennia marina HOM05D006642 ORTHO05D008856 2.1e-101 374.0 337 75.1
Dinv09723 Davidia involucrata HOM05D006642 ORTHO05D008856 8.0e-101 372.1 335 74.3
Eucgr.K01239 Eucalyptus grandis HOM05D006642 ORTHO05D008856 1.0e-100 371.7 334 73.4
TAR624G0481 Trochodendron aralioides HOM05D006642 ORTHO05D008856 2.6e-99 367.1 317 77.3
Actinidia39996 Actinidia chinensis HOM05D006642 ORTHO05D008856 4.4e-99 366.3 336 73.5
Potri.001G220300 Populus trichocarpa HOM05D006642 ORTHO05D008856 3.2e-97 360.1 334 73.7
Sopen07g023170 Solanum pennellii HOM05D006642 ORTHO05D008856 2.0e-96 357.5 337 71.5
Solyc07g043600.4 Solanum lycopersicum HOM05D006642 ORTHO05D008856 3.5e-96 356.7 337 71.5
TWI23G0590 Tripterygium wilfordii HOM05D006642 ORTHO05D008856 3.5e-96 356.7 336 72.6
PGSC0003DMG400015924 Solanum tuberosum HOM05D006642 ORTHO05D008856 3.9e-95 353.2 331 71.6
arahy.Tifrunner.gnm1.ann1.T7AVMG Arachis hypogaea HOM05D006642 ORTHO05D008856 5.0e-95 352.8 303 77.6
Oeu051395.1 Olea europaea HOM05D006642 ORTHO05D008856 6.6e-95 352.4 305 77.7
vmacro19989 Vaccinium macrocarpon HOM05D006642 ORTHO05D008856 1.5e-94 351.3 336 71.7
Nn4g26621 Nelumbo nucifera HOM05D006642 ORTHO05D008856 3.3e-94 350.1 302 77.2
Cc05_g00360 Coffea canephora HOM05D006642 ORTHO05D008856 5.6e-94 349.4 334 71.6
Phvul.007G015300 Phaseolus vulgaris HOM05D006642 ORTHO05D008856 2.1e-93 347.4 306 74.8
Nitab4.5_0001843g0110 Nicotiana tabacum HOM05D006642 ORTHO05D008856 2.8e-93 347.1 304 76.0
CAN.G819.5 Capsicum annuum HOM05D006642 ORTHO05D008856 6.2e-93 345.9 337 70.3
Hma1.2p1_0073F.1_g038540 Hydrangea macrophylla HOM05D006642 ORTHO05D008856 8.0e-93 345.5 304 76.3
Aqoxy5G04293 Aquilegia oxysepala HOM05D006642 ORTHO05D008856 1.1e-92 345.1 319 74.0
SGA_v2.0_scaffold73G24452 Striga asiatica HOM05D006642 ORTHO05D008856 1.1e-92 345.1 335 69.3
Nitab4.5_0007665g0020 Nicotiana tabacum HOM05D006642 ORTHO05D008856 2.3e-92 344.0 304 75.7
Sc14g0005210 Simmondsia chinensis HOM05D006642 ORTHO05D008856 4.0e-92 343.2 336 68.5
Glyma.10G285200 Glycine max HOM05D006642 ORTHO05D008856 5.2e-92 342.8 306 74.2
MBI02_g40097_MAGBIO Magnolia biondii HOM05D006642 ORTHO05D008856 1.2e-91 341.7 317 72.6
Ca_11227_v3 Cicer arietinum L. HOM05D006642 ORTHO05D008856 1.5e-91 341.3 304 75.7
Duzib147G0394 Durio zibethinus HOM05D006642 ORTHO05D008856 1.5e-91 341.3 296 70.9
Glyma.20G103800 Glycine max HOM05D006642 ORTHO05D008856 1.5e-91 341.3 305 75.4
Sp5g03940 Schrenkiella parvula HOM05D006642 ORTHO05D008856 1.5e-91 341.3 335 70.7
Carub.0005s2580 Capsella rubella HOM05D006642 ORTHO05D008856 2.0e-91 340.9 335 70.7
VMungo0720G2195 Vigna mungo HOM05D000164 ORTHO05D000096 3.4e-91 340.1 305 74.4
Thhalv10005856m.g Eutrema salsugineum HOM05D006642 ORTHO05D008856 5.8e-91 339.3 335 70.4
Sabra16G0124100 Salix brachista HOM05D006642 ORTHO05D008856 5.8e-91 339.3 309 75.4
Thecc.01G164600 Theobroma cacao HOM05D006642 ORTHO05D008856 9.8e-91 338.6 295 76.6
PSO675G5462 Papaver somniferum HOM05D006642 ORTHO05D008856 1.7e-90 337.8 317 77.6
AT3G59040 Arabidopsis thaliana HOM05D006642 ORTHO05D008856 2.2e-90 337.4 335 70.4
CARHR169450 Cardamine hirsuta HOM05D006642 ORTHO05D008856 2.2e-90 337.4 335 70.4
Gorai.012G039700 Gossypium raimondii HOM05D006642 ORTHO05D008856 2.9e-90 337.0 295 77.6
Lj5g0013784 Lotus japonicus HOM05D006642 ORTHO05D008856 2.9e-90 337.0 304 75.7
A09p51470 Brassica napus HOM05D006642 ORTHO05D008856 6.4e-90 335.9 335 75.5
COL.COLO4_29911 Corchorus olitorius HOM05D006642 ORTHO05D008856 6.4e-90 335.9 295 76.3
Migut.M00108 Erythranthe guttata HOM05D006642 ORTHO05D008856 8.3e-90 335.5 337 55.2
Medtr1g114300 Medicago truncatula HOM05D006642 ORTHO05D008856 1.1e-89 335.1 305 73.8
Aa31LG10G13530 Aethionema arabicum HOM05D006642 ORTHO05D008856 1.4e-89 334.7 335 69.9
DCAR_023000 Daucus carota HOM05D006642 ORTHO05D008856 1.4e-89 334.7 309 71.5
Lalb_Chr06g0163881 Lupinus albus HOM05D006642 ORTHO05D008856 1.9e-89 334.3 300 75.0
Gohir.D04G035200 Gossypium hirsutum HOM05D006642 ORTHO05D008856 4.1e-89 333.2 295 76.9
Gohir.A05G380400 Gossypium hirsutum HOM05D006642 ORTHO05D008856 5.4e-89 332.8 295 76.9
QL02p091883 Quercus lobata HOM05D006642 ORTHO05D008856 7.0e-89 332.4 589 76.7
BcaC07g40235 Brassica carinata HOM05D006642 ORTHO05D008856 9.2e-89 332.0 335 74.9
C08p34230 Brassica napus HOM05D006642 ORTHO05D008856 1.2e-88 331.6 335 74.9
PSO541G5267 Papaver somniferum HOM05D006642 ORTHO05D008856 1.2e-88 331.6 316 77.2
Psat6g233520 Pisum sativum HOM05D006642 ORTHO05D008856 4.6e-88 329.7 304 73.4
HanXRQChr01g0029361 Helianthus annuus HOM05D006642 ORTHO05D008856 1.3e-87 328.2 304 72.7
GSVIVG01020809001 Vitis vinifera HOM05D006642 ORTHO05D008856 5.1e-87 326.2 298 76.2
unitig_899.g15288 Utricularia gibba HOM05D006642 ORTHO05D008856 6.6e-87 325.9 343 67.1
BraA09t40583Z Brassica rapa HOM05D006642 ORTHO05D008856 5.6e-86 322.8 335 74.0
Rhsim05G0172300 Rhododendron simsii HOM05D006642 ORTHO05D008856 7.3e-86 322.4 311 77.5
ECA248G0755 Erigeron canadensis HOM05D006642 ORTHO05D008856 2.8e-85 320.5 304 71.7
THA.LOC104802288 Tarenaya hassleriana HOM05D006642 ORTHO05D008856 4.7e-85 319.7 344 67.7
Lsat_1_v5_gn_1_49160 Lactuca sativa HOM05D006642 ORTHO05D008856 6.2e-85 319.3 307 64.5
Os08g0191900 Oryza sativa ssp. japonica HOM05D006642 ORTHO05D008856 6.2e-85 319.3 327 69.1
AUR62002293 Chenopodium quinoa HOM05D006642 ORTHO05D008856 1.4e-84 318.2 301 72.4
TPR.G4069 Trifolium pratense HOM05D006642 ORTHO05D008856 4.0e-84 316.6 304 70.7
Hund08483 Selenicereus undatus HOM05D006642 ORTHO05D008856 5.2e-84 316.2 335 66.9
Ah.07g201920 Amaranthus hybridus HOM05D006642 ORTHO05D008856 1.2e-83 315.1 305 70.8
BolC8t51020H Brassica oleracea HOM05D006642 ORTHO05D008856 2.6e-83 313.9 310 77.7
HPP92_011054 Vanilla planifolia HOM05D006642 ORTHO05D008856 3.4e-83 313.5 303 70.0
Zm00001eb413390 Zea mays HOM05D006642 ORTHO05D008856 4.4e-83 313.2 315 67.6
Ah.07g198470 Amaranthus hybridus HOM05D006642 ORTHO05D008856 3.7e-82 310.1 303 54.1
ATR1098G151 Amborella trichopoda HOM05D006642 ORTHO05D008856 3.7e-82 310.1 299 69.9
CDE05G1065 Ceratophyllum demersum HOM05D006642 ORTHO05D008856 3.7e-82 310.1 299 72.9
AUR62015397 Chenopodium quinoa HOM05D006642 ORTHO05D008856 4.9e-82 309.7 333 52.3
EL10Ac8g19571 Beta vulgaris HOM05D006642 ORTHO05D008856 1.4e-81 308.1 320 68.8
MD17G1132200 Malus domestica HOM05D006642 ORTHO05D008856 3.9e-79 300.1 293 71.3
BcaC07g40308 Brassica carinata HOM05D006642 ORTHO05D008856 8.6e-79 298.9 293 79.5
QL93p2017_0027 Quercus lobata HOM05D006642 ORTHO05D008856 5.6e-78 296.2 545 78.3
MELO3C026387.2 Cucumis melo HOM05D006642 ORTHO05D008856 2.4e-73 280.8 283 79.2
Cpa.g.sc50.124 Carica papaya HOM05D006642 ORTHO05D008856 8.1e-69 265.8 307 56.4
Lj1A585G41 Lonicera japonica HOM05D006642 ORTHO05D008856 3.8e-66 256.9 183 70.5
FAN09G4833 Fragaria x ananassa HOM05D006642 ORTHO05D008856 9.0e-60 235.7 123 95.1
Nn4g26620 Nelumbo nucifera HOM05D006642 ORTHO05D008856 2.7e-56 224.2 136 76.5
Haze_13626 Corylus avellana HOM05D006642 ORTHO05D008856 7.9e-56 222.6 211 81.0
EL10Ac5g11659 Beta vulgaris HOM05D006642 ORTHO05D008856 3.7e-53 213.8 150 69.3
HPP92_011074 Vanilla planifolia HOM05D006642 ORTHO05D008856 1.3e-50 205.3 146 65.1
AL5G40920 Arabidopsis lyrata HOM05D006642 ORTHO05D008856 1.4e-41 175.3 196 77.0
CiPaw.03G197600 Carya illinoinensis HOM05D006642 ORTHO05D008856 1.0e-34 152.5 189 47.1
EL10Ac5g11660 Beta vulgaris HOM05D006642 ORTHO05D008856 5.7e-30 136.7 105 66.7
Pp3c26_11100 Physcomitrium patens HOM05D006642 ORTHO05D008856 3.1e-28 131.0 262 48.1
C06p25860 Brassica napus HOM05D000461 ORTHO05D001840 6.9e-28 129.8 272 38.2
Mapoly0047s0104 Marchantia polymorpha HOM05D006642 ORTHO05D008856 5.5e-25 120.2 261 46.0
BcaC08g44955 Brassica carinata HOM05D006642 ORTHO05D008856 2.0e-22 111.7 82 65.9
SMO259G0047 Selaginella moellendorffii HOM05D006642 ORTHO05D008856 3.3e-22 110.9 268 42.2
BcaB02g07488 Brassica carinata HOM05D006642 ORTHO05D008856 4.1e-20 104.0 67 79.1
BcaB02g07487 Brassica carinata HOM05D000461 ORTHO05D001840 4.5e-19 100.5 77 63.6
BolC6t37747H Brassica oleracea HOM05D006642 ORTHO05D032904 2.7e-16 91.3 66 74.2
Lj5g0013792 Lotus japonicus HOM05D006642 ORTHO05D008856 5.5e-09 67.0 48 66.7
BcaC08g44954 Brassica carinata HOM05D006642 ORTHO05D032904 1.0e-07 62.8 50 70.0


User provided reference genes

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