Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0152371 Rosa chinensis HOM05D003395 ORTHO05D004087 1.5e-167 592.8 301 100.0
FvH4_6g38800 Fragaria vesca HOM05D003395 ORTHO05D004087 6.5e-107 391.3 301 70.4
RcHm_v2.0_Chr3g0483381 Rosa chinensis HOM05D003395 ORTHO05D004087 2.6e-103 379.4 301 66.4
MD14G1076700 Malus domestica HOM05D003395 ORTHO05D004087 4.4e-103 378.6 300 66.3
FvH4_6g24390 Fragaria vesca HOM05D003395 ORTHO05D004087 7.4e-103 377.9 301 66.4
FAN05G3635 Fragaria x ananassa HOM05D003395 ORTHO05D004087 7.4e-103 377.9 301 66.4
FAN09G3838 Fragaria x ananassa HOM05D003395 ORTHO05D004087 9.7e-103 377.5 301 66.1
Prupe.7G054800 Prunus persica HOM05D003395 ORTHO05D004087 3.7e-102 375.6 293 68.3
CiPaw.09G039800 Carya illinoinensis HOM05D003395 ORTHO05D004087 4.8e-102 375.2 301 65.1
FAN02G0096 Fragaria x ananassa HOM05D003395 ORTHO05D004087 6.3e-102 374.8 301 65.8
MD12G1080600 Malus domestica HOM05D003395 ORTHO05D004087 8.2e-102 374.4 301 66.1
Lj3g0013293 Lotus japonicus HOM05D003395 ORTHO05D004087 1.4e-101 373.6 301 63.5
Haze_19811 Corylus avellana HOM05D003395 ORTHO05D004087 9.1e-101 370.9 301 63.8
Haze_19814 Corylus avellana HOM05D003395 ORTHO05D004087 9.1e-101 370.9 301 63.8
GSVIVG01033240001 Vitis vinifera HOM05D003395 ORTHO05D004087 9.1e-101 370.9 301 63.8
TAR633G2151 Trochodendron aralioides HOM05D003395 ORTHO05D004087 1.0e-99 367.5 301 63.8
QL07p003024 Quercus lobata HOM05D003395 ORTHO05D004087 1.3e-99 367.1 301 63.5
Ca_01074_v3 Cicer arietinum L. HOM05D003395 ORTHO05D004087 3.8e-99 365.5 301 62.8
Dinv39652 Davidia involucrata HOM05D003395 ORTHO05D004087 5.0e-99 365.2 301 63.1
Ciclev10004294m.g Citrus clementina HOM05D003395 ORTHO05D004087 8.5e-99 364.4 301 63.5
MELO3C009808.2 Cucumis melo HOM05D003395 ORTHO05D004087 8.5e-99 364.4 301 63.5
Sed0021456 Sechium edule HOM05D003395 ORTHO05D004087 1.1e-98 364.0 301 63.1
TPR.G37242 Trifolium pratense HOM05D003395 ORTHO05D004087 1.1e-98 364.0 301 62.1
Atru.chr1.1149 Acer truncatum HOM05D003395 ORTHO05D004087 1.9e-98 363.2 301 63.1
Phvul.005G175500 Phaseolus vulgaris HOM05D003395 ORTHO05D004087 1.9e-98 363.2 301 62.5
ClCG10G015680 Citrullus lanatus HOM05D003395 ORTHO05D004087 3.2e-98 362.5 301 63.1
Glyma.13G363900 Glycine max HOM05D003395 ORTHO05D004087 4.2e-98 362.1 301 62.1
Glyma.15G010000 Glycine max HOM05D003395 ORTHO05D004087 4.2e-98 362.1 301 62.5
Medtr2g103370 Medicago truncatula HOM05D003395 ORTHO05D004087 5.5e-98 361.7 301 62.1
VMungo1080G0039 Vigna mungo HOM05D003395 ORTHO05D004087 5.5e-98 361.7 301 62.1
CSS0000776 Camellia sinensis var. sinensis HOM05D003395 ORTHO05D004087 7.2e-98 361.3 301 60.8
TWI74G0608 Tripterygium wilfordii HOM05D003395 ORTHO05D004087 7.2e-98 361.3 301 63.8
Psat5g301400 Pisum sativum HOM05D003395 ORTHO05D004087 1.2e-97 360.5 301 61.8
Sabra15G0019300 Salix brachista HOM05D003395 ORTHO05D004087 2.7e-97 359.4 301 61.5
Duzib128G1779 Durio zibethinus HOM05D003395 ORTHO05D004087 4.7e-97 358.6 301 62.5
Rhsim04G0105700 Rhododendron simsii HOM05D003395 ORTHO05D004087 8.0e-97 357.8 301 62.1
Sabra15G0021800 Salix brachista HOM05D003395 ORTHO05D004087 8.0e-97 357.8 301 61.5
CsaV3_3G040740 Cucumis sativus L. HOM05D003395 ORTHO05D004087 1.0e-96 357.5 301 62.1
vmacro09059 Vaccinium macrocarpon HOM05D003395 ORTHO05D004087 1.0e-96 357.5 301 61.8
COL.COLO4_22300 Corchorus olitorius HOM05D003395 ORTHO05D004087 1.4e-96 357.1 301 61.5
Lalb_Chr24g0395581 Lupinus albus HOM05D003395 ORTHO05D004087 1.4e-96 357.1 301 61.5
Potri.012G034800 Populus trichocarpa HOM05D003395 ORTHO05D004087 1.4e-96 357.1 301 60.5
Sabra12G0023800 Salix brachista HOM05D003395 ORTHO05D004087 1.4e-96 357.1 301 59.8
Nn7g36372 Nelumbo nucifera HOM05D003395 ORTHO05D004087 1.8e-96 356.7 303 61.1
Potri.015G026200 Populus trichocarpa HOM05D003395 ORTHO05D004087 5.2e-96 355.1 301 60.1
Lj1A1128G63 Lonicera japonica HOM05D003395 ORTHO05D004087 2.0e-95 353.2 301 61.1
HanXRQChr04g0125091 Helianthus annuus HOM05D003395 ORTHO05D004087 3.3e-95 352.4 300 59.7
Lalb_Chr14g0373701 Lupinus albus HOM05D003395 ORTHO05D004087 3.3e-95 352.4 301 61.1
CANSAT80G2433 Cannabis sativa HOM05D003395 ORTHO05D004087 4.4e-95 352.1 301 61.5
Lj1A1126G58 Lonicera japonica HOM05D003395 ORTHO05D004087 5.7e-95 351.7 301 60.8
Manes.11G065000 Manihot esculenta HOM05D003395 ORTHO05D004087 5.7e-95 351.7 301 60.8
Haze_09905 Corylus avellana HOM05D003395 ORTHO05D004087 7.4e-95 351.3 301 61.8
ECA236G0559 Erigeron canadensis HOM05D003395 ORTHO05D004087 3.7e-94 349.0 301 59.1
arahy.Tifrunner.gnm1.ann1.13YWQX Arachis hypogaea HOM05D003395 ORTHO05D004087 6.3e-94 348.2 301 60.5
Eucgr.K01765 Eucalyptus grandis HOM05D003395 ORTHO05D004087 6.3e-94 348.2 301 60.1
arahy.Tifrunner.gnm1.ann1.C8DH2G Arachis hypogaea HOM05D003395 ORTHO05D004087 8.2e-94 347.8 301 60.5
Cc06_g17870 Coffea canephora HOM05D003395 ORTHO05D004087 8.2e-94 347.8 301 59.8
Thecc.05G151200 Theobroma cacao HOM05D003395 ORTHO05D004087 8.2e-94 347.8 303 60.1
Sc19g0006620 Simmondsia chinensis HOM05D003395 ORTHO05D004087 1.1e-93 347.4 301 59.5
Aqoxy2G00226 Aquilegia oxysepala HOM05D003395 ORTHO05D004087 2.4e-93 346.3 300 60.3
DCAR_020506 Daucus carota HOM05D003395 ORTHO05D004087 9.1e-93 344.4 300 58.0
Oeu008171.1 Olea europaea HOM05D003395 ORTHO05D004087 9.1e-93 344.4 301 59.8
CAN.G676.13 Capsicum annuum HOM05D003395 ORTHO05D004087 1.2e-92 344.0 300 58.7
Gohir.D11G326700 Gossypium hirsutum HOM05D003395 ORTHO05D004087 1.2e-92 344.0 300 60.7
Os03g0349000 Oryza sativa ssp. japonica HOM05D003395 ORTHO05D004087 1.2e-92 344.0 300 59.0
Gorai.007G357300 Gossypium raimondii HOM05D003395 ORTHO05D004087 1.6e-92 343.6 300 60.3
MBI13_g36815_MAGBIO Magnolia biondii HOM05D003395 ORTHO05D004087 1.6e-92 343.6 292 59.9
Lsat_1_v5_gn_8_82001 Lactuca sativa HOM05D003395 ORTHO05D004087 2.6e-92 342.8 301 58.5
SalBow6G3234 Salvia bowleyana HOM05D003395 ORTHO05D004087 6.5e-91 338.2 302 57.9
Eucgr.K01721 Eucalyptus grandis HOM05D003395 ORTHO05D004087 8.5e-91 337.8 293 60.1
Hma1.2p1_0556F.1_g178050 Hydrangea macrophylla HOM05D003395 ORTHO05D004087 8.5e-91 337.8 292 59.2
ATR0320G031 Amborella trichopoda HOM05D003395 ORTHO05D004087 1.1e-90 337.4 301 56.8
Nitab4.5_0006870g0040 Nicotiana tabacum HOM05D003395 ORTHO05D004087 1.1e-90 337.4 300 58.3
PSO210G1603 Papaver somniferum HOM05D003395 ORTHO05D004087 1.5e-90 337.0 304 57.6
SalBow1G6094 Salvia bowleyana HOM05D003395 ORTHO05D004087 1.5e-90 337.0 302 57.3
THA.LOC104817509 Tarenaya hassleriana HOM05D003395 ORTHO05D004087 1.9e-90 336.7 301 57.8
AUR62026086 Chenopodium quinoa HOM05D003395 ORTHO05D004087 3.2e-90 335.9 301 58.8
Peaxi162Scf00130g00723 Petunia axillaris HOM05D003395 ORTHO05D004087 3.2e-90 335.9 300 57.3
Migut.K00101 Erythranthe guttata HOM05D003395 ORTHO05D004087 1.2e-89 334.0 303 57.8
Nitab4.5_0000826g0280 Nicotiana tabacum HOM05D003395 ORTHO05D004087 1.2e-89 334.0 300 57.7
HPP92_001326 Vanilla planifolia HOM05D003395 ORTHO05D004087 1.2e-89 334.0 301 58.5
FAN14G3261 Fragaria x ananassa HOM05D003395 ORTHO05D004087 1.6e-89 333.6 256 68.0
Solyc04g016240.3 Solanum lycopersicum HOM05D003395 ORTHO05D004087 2.1e-89 333.2 300 57.3
Sopen04g008350 Solanum pennellii HOM05D003395 ORTHO05D004087 2.1e-89 333.2 300 57.3
Thhalv10016231m.g Eutrema salsugineum HOM05D003395 ORTHO05D004087 4.7e-89 332.0 301 57.5
Carub.0005s2420 Capsella rubella HOM05D003395 ORTHO05D004087 6.1e-89 331.6 303 57.4
Carub.0004s2387 Capsella rubella HOM05D003395 ORTHO05D004087 1.0e-88 330.9 301 57.1
BcaB06g29192 Brassica carinata HOM05D003395 ORTHO05D004087 1.4e-88 330.5 301 57.1
BraA04t18629Z Brassica rapa HOM05D003395 ORTHO05D004087 1.8e-88 330.1 302 56.6
Sp4g23860 Schrenkiella parvula HOM05D003395 ORTHO05D004087 1.8e-88 330.1 301 57.1
PSO210G2967 Papaver somniferum HOM05D003395 ORTHO05D004087 2.3e-88 329.7 304 56.2
AL4G39710 Arabidopsis lyrata HOM05D003395 ORTHO05D004087 3.0e-88 329.3 301 57.5
BcaC02g07302 Brassica carinata HOM05D003395 ORTHO05D004087 3.0e-88 329.3 302 56.6
A04p31720 Brassica napus HOM05D003395 ORTHO05D004087 3.0e-88 329.3 302 56.6
C04p69140 Brassica napus HOM05D003395 ORTHO05D004087 3.0e-88 329.3 302 56.6
BolC4t28411H Brassica oleracea HOM05D003395 ORTHO05D004087 3.0e-88 329.3 302 56.6
AT2G41620 Arabidopsis thaliana HOM05D003395 ORTHO05D004087 4.0e-88 328.9 301 56.8
CARHR136710 Cardamine hirsuta HOM05D003395 ORTHO05D004087 4.0e-88 328.9 301 56.5
A09p50250 Brassica napus HOM05D003395 ORTHO05D004087 1.2e-87 327.4 300 57.0
BraA09t40475Z Brassica rapa HOM05D003395 ORTHO05D004087 1.2e-87 327.4 300 57.0
AL5G38890 Arabidopsis lyrata HOM05D003395 ORTHO05D004087 2.0e-87 326.6 300 55.7
Zm00001eb016760 Zea mays HOM05D003395 ORTHO05D004087 2.6e-87 326.2 300 55.7
Aa31LG1G23630 Aethionema arabicum HOM05D003395 ORTHO05D004087 9.7e-87 324.3 301 56.8
AT3G57350 Arabidopsis thaliana HOM05D003395 ORTHO05D004087 9.7e-87 324.3 300 55.7
MSTRG.26130 Avicennia marina HOM05D003395 ORTHO05D004087 9.7e-87 324.3 301 55.8
BcaC07g40053 Brassica carinata HOM05D003395 ORTHO05D004087 9.7e-87 324.3 300 56.7
C08p32740 Brassica napus HOM05D003395 ORTHO05D004087 9.7e-87 324.3 300 56.7
BolC8t50885H Brassica oleracea HOM05D003395 ORTHO05D004087 9.7e-87 324.3 300 56.7
Ah.13g076590 Amaranthus hybridus HOM05D003395 ORTHO05D004087 1.3e-86 323.9 301 56.1
PGSC0003DMG400012709 Solanum tuberosum HOM05D003395 ORTHO05D004087 3.7e-86 322.4 293 57.0
SEGI_19146 Sequoiadendron giganteum HOM05D003395 ORTHO05D004087 4.8e-86 322.0 302 55.6
Sp5g05250 Schrenkiella parvula HOM05D003395 ORTHO05D004087 5.3e-85 318.5 300 55.7
EL10Ac3g07130 Beta vulgaris HOM05D003395 ORTHO05D004087 1.6e-84 317.0 301 56.1
CDE11G0192 Ceratophyllum demersum HOM05D003395 ORTHO05D004087 3.8e-83 312.4 293 54.6
MBI13_g36804_MAGBIO Magnolia biondii HOM05D003395 ORTHO05D004087 6.5e-83 311.6 301 55.1
SHI10456 Sapria himalayana HOM05D003395 ORTHO05D004087 3.2e-82 309.3 292 56.2
SGA_v2.0_scaffold94G28494 Striga asiatica HOM05D003395 ORTHO05D004087 4.2e-82 308.9 292 54.8
unitig_22.g5792 Utricularia gibba HOM05D003395 ORTHO05D004087 9.4e-82 307.8 300 52.0
Gohir.A11G309900 Gossypium hirsutum HOM05D003395 ORTHO05D004087 3.4e-79 299.3 265 60.0
Eucgr.K01999 Eucalyptus grandis HOM05D003395 ORTHO05D004087 7.0e-77 291.6 252 59.1
Thhalv10005836m.g Eutrema salsugineum HOM05D003395 ORTHO05D004087 5.9e-76 288.5 283 54.1
AagrBONN_evm.TU.Sc2ySwM_117.1001 Anthoceros agrestis HOM05D003395 ORTHO05D004087 7.7e-76 288.1 301 49.5
CARHR167540 Cardamine hirsuta HOM05D003395 ORTHO05D004087 4.2e-74 282.3 255 57.3
Mapoly0069s0022 Marchantia polymorpha HOM05D003395 ORTHO05D004087 2.6e-71 273.1 301 47.5
SMO203G0013 Selaginella moellendorffii HOM05D003395 ORTHO05D004087 8.3e-70 268.1 299 49.8
CAN.G624.32 Capsicum annuum HOM05D003395 ORTHO05D004087 3.1e-69 266.2 299 49.2
Pp3c6_19740 Physcomitrium patens HOM05D003395 ORTHO05D004087 8.0e-65 251.5 302 45.4
AUR62024500 Chenopodium quinoa HOM05D003395 ORTHO05D004087 3.2e-61 239.6 218 56.9
CBR_g4043 Chara braunii HOM05D003395 ORTHO05D004087 6.2e-49 198.7 334 36.8
Oeu023127.1 Olea europaea HOM05D003395 ORTHO05D004087 5.2e-48 195.7 224 48.7
Actinidia17665 Actinidia chinensis HOM05D003395 ORTHO05D004087 3.0e-43 179.9 169 54.4
PGSC0003DMG402030272 Solanum tuberosum HOM05D003395 ORTHO05D004087 2.5e-42 176.8 154 59.7
Lj3g0025487 Lotus japonicus HOM05D003395 ORTHO05D004087 1.0e-35 154.8 117 67.5
Eucgr.K02007 Eucalyptus grandis HOM05D003395 ORTHO05D004087 9.9e-31 138.3 104 68.3
SHI37552 Sapria himalayana HOM05D003395 ORTHO05D004087 1.1e-26 124.8 175 44.0
SHI32633 Sapria himalayana HOM05D003395 ORTHO05D004087 2.1e-20 104.0 98 54.1
AL4G39910 Arabidopsis lyrata HOM05D003395 ORTHO05D004087 1.3e-14 84.7 69 62.3
SHI34459 Sapria himalayana HOM05D003395 ORTHO05D004087 1.3e-14 84.7 98 43.9
SHI33206 Sapria himalayana HOM05D003395 ORTHO05D004087 1.1e-13 81.6 109 41.3
SHI17502 Sapria himalayana HOM05D003395 ORTHO05D004087 4.2e-13 79.7 68 55.9
Cre17.g717800 Chlamydomonas reinhardtii HOM05D003395 ORTHO05D004087 7.1e-13 79.0 324 24.1
SHI32634 Sapria himalayana HOM05D003395 ORTHO05D004087 8.7e-11 72.0 101 42.6
SHI34713 Sapria himalayana HOM05D003395 ORTHO05D004087 1.1e-10 71.6 101 40.6
SHI37781 Sapria himalayana HOM05D003395 ORTHO05D004087 4.3e-10 69.7 65 52.3
PRCOL_00003855 Prasinoderma coloniale HOM05D003395 ORTHO05D004087 9.6e-10 68.6 285 28.4
SHI25400 Sapria himalayana HOM05D003395 ORTHO05D004087 1.6e-09 67.8 116 38.8
SHI40122 Sapria himalayana HOM05D003395 ORTHO05D004087 1.6e-09 67.8 122 35.2
AagrBONN_evm.TU.Sc2ySwM_117.981 Anthoceros agrestis HOM05D003395 ORTHO05D004087 6.9e-08 62.4 103 40.8
SHI27325 Sapria himalayana HOM05D003395 ORTHO05D004087 1.3e-06 58.2 101 33.7
SHI48926 Sapria himalayana HOM05D003395 ORTHO05D004087 2.9e-06 57.0 60 50.0
SHI34458 Sapria himalayana HOM05D003395 ORTHO05D004087 4.9e-06 56.2 59 55.9


User provided reference genes

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