Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0150441 Rosa chinensis HOM05D005041 ORTHO05D006003 1.7e-197 692.6 379 100.0
FAN09G1464 Fragaria x ananassa HOM05D000054 ORTHO05D006003 1.5e-188 662.9 375 95.7
FAN14G1924 Fragaria x ananassa HOM05D000054 ORTHO05D006003 5.7e-177 624.4 356 87.9
Prupe.3G170000 Prunus persica HOM05D005041 ORTHO05D006003 1.4e-175 619.8 379 88.7
MD17G1143300 Malus domestica HOM05D005041 ORTHO05D006003 1.7e-173 612.8 379 88.7
FAN02G2360 Fragaria x ananassa HOM05D000054 ORTHO05D006003 2.8e-171 605.5 383 81.2
MD09G1156800 Malus domestica HOM05D005041 ORTHO05D006003 5.2e-170 601.3 388 76.0
CiPaw.04G135200 Carya illinoinensis HOM05D005041 ORTHO05D006003 5.4e-167 591.3 379 85.0
TWI63G0392 Tripterygium wilfordii HOM05D005041 ORTHO05D006003 1.9e-164 582.8 378 72.8
COL.COLO4_33676 Corchorus olitorius HOM05D005041 ORTHO05D006003 1.2e-161 573.5 379 72.6
Thecc.01G157600 Theobroma cacao HOM05D005041 ORTHO05D006003 2.0e-161 572.8 379 72.3
Eucgr.K01189 Eucalyptus grandis HOM05D005041 ORTHO05D006003 9.8e-161 570.5 379 71.0
Dinv26517 Davidia involucrata HOM05D005041 ORTHO05D006003 1.7e-160 569.7 378 71.2
Atru.chr6.3564 Acer truncatum HOM05D005041 ORTHO05D006003 3.7e-160 568.5 379 71.5
Ciclev10015615m.g Citrus clementina HOM05D005041 ORTHO05D006003 6.4e-160 567.8 377 70.8
Cfa022568 Carpinus fangiana HOM05D005041 ORTHO05D006003 1.4e-159 566.6 380 80.0
CSS0038733 Camellia sinensis var. sinensis HOM05D005041 ORTHO05D006003 3.2e-159 565.5 379 69.9
Manes.01G129200 Manihot esculenta HOM05D005041 ORTHO05D006003 3.2e-159 565.5 377 75.1
MELO3C031066.2 Cucumis melo HOM05D005041 ORTHO05D006003 4.1e-159 565.1 379 70.4
Actinidia11183 Actinidia chinensis HOM05D005041 ORTHO05D006003 7.0e-159 564.3 379 70.2
Haze_13460 Corylus avellana HOM05D005041 ORTHO05D006003 7.0e-159 564.3 388 79.1
Gorai.011G123100 Gossypium raimondii HOM05D005041 ORTHO05D006003 1.6e-158 563.1 379 70.7
Sed0005186 Sechium edule HOM05D005041 ORTHO05D006003 2.0e-158 562.8 379 70.4
Gohir.D10G111500 Gossypium hirsutum HOM05D005041 ORTHO05D006003 7.8e-158 560.8 379 70.4
Gohir.A10G154500 Gossypium hirsutum HOM05D005041 ORTHO05D006003 1.9e-156 556.2 379 69.7
QL08p043305 Quercus lobata HOM05D005041 ORTHO05D006003 2.5e-156 555.8 377 81.4
Hma1.2p1_0178F.1_g078240 Hydrangea macrophylla HOM05D005041 ORTHO05D006003 3.3e-156 555.4 378 69.8
GSVIVG01020787001 Vitis vinifera HOM05D005041 ORTHO05D006003 3.3e-156 555.4 379 69.7
CsaV3_6G037940 Cucumis sativus L. HOM05D005041 ORTHO05D006003 9.5e-156 553.9 381 69.3
Nn3g21016 Nelumbo nucifera HOM05D005041 ORTHO05D006003 1.2e-155 553.5 379 69.9
PGR142G0148 Punica granatum HOM05D005041 ORTHO05D006003 1.2e-155 553.5 374 69.5
TAR626G0242 Trochodendron aralioides HOM05D005041 ORTHO05D006003 1.2e-155 553.5 379 77.0
Lalb_Chr20g0114161 Lupinus albus HOM05D005041 ORTHO05D006003 6.2e-155 551.2 376 69.7
CANSAT11G1484 Cannabis sativa HOM05D005041 ORTHO05D006003 1.8e-154 549.7 380 79.7
DCAR_013571 Daucus carota HOM05D005041 ORTHO05D006003 4.0e-154 548.5 379 68.9
Glyma.18G103800 Glycine max HOM05D005041 ORTHO05D006003 1.2e-153 547.0 376 79.8
Potri.014G141700 Populus trichocarpa HOM05D005041 ORTHO05D006003 1.5e-153 546.6 379 80.5
Manes.02G087100 Manihot esculenta HOM05D005041 ORTHO05D006003 2.6e-153 545.8 379 67.5
Glyma.08G311700 Glycine max HOM05D005041 ORTHO05D006003 3.7e-152 542.0 376 79.5
Medtr3g049070 Medicago truncatula HOM05D005041 ORTHO05D006003 2.4e-151 539.3 376 78.5
Lj6g0019726 Lotus japonicus HOM05D005041 ORTHO05D006003 2.1e-150 536.2 376 78.7
Ca_14633_v3 Cicer arietinum L. HOM05D005041 ORTHO05D006003 2.7e-150 535.8 376 78.2
THA.LOC104826236 Tarenaya hassleriana HOM05D005041 ORTHO05D006003 2.3e-149 532.7 370 77.0
C03p20380 Brassica napus HOM05D005041 ORTHO05D006003 3.0e-149 532.3 380 66.1
BolC3t14416H Brassica oleracea HOM05D005041 ORTHO05D006003 3.0e-149 532.3 380 66.1
BraA03t11001Z Brassica rapa HOM05D005041 ORTHO05D006003 1.1e-148 530.4 380 66.1
BcaB01g04071 Brassica carinata HOM05D005041 ORTHO05D006003 1.9e-148 529.6 380 65.8
Cc05_g09060 Coffea canephora HOM05D005041 ORTHO05D006003 2.5e-148 529.3 380 66.1
VMungo1080G0034 Vigna mungo HOM05D005041 ORTHO05D006003 2.5e-148 529.3 376 77.1
A03p17270 Brassica napus HOM05D005041 ORTHO05D006003 3.3e-148 528.9 373 66.2
MSTRG.15060 Avicennia marina HOM05D005041 ORTHO05D006003 5.6e-148 528.1 377 67.1
Phvul.005G127400 Phaseolus vulgaris HOM05D005041 ORTHO05D006003 9.5e-148 527.3 376 77.4
Peaxi162Scf00828g00019 Petunia axillaris HOM05D005041 ORTHO05D006003 1.6e-147 526.6 379 67.3
Psat5g186840 Pisum sativum HOM05D005041 ORTHO05D006003 2.8e-147 525.8 376 77.4
PSO541G3312 Papaver somniferum HOM05D005041 ORTHO05D006003 6.2e-147 524.6 377 65.0
Sp4g13380 Schrenkiella parvula HOM05D005041 ORTHO05D006003 6.2e-147 524.6 380 65.5
BcaC02g11169 Brassica carinata HOM05D005041 ORTHO05D006003 3.1e-146 522.3 373 65.7
C04p19760 Brassica napus HOM05D005041 ORTHO05D006003 3.1e-146 522.3 373 65.7
BolC4t23509H Brassica oleracea HOM05D005041 ORTHO05D006003 3.1e-146 522.3 373 65.7
BcaB02g10347 Brassica carinata HOM05D005041 ORTHO05D006003 4.0e-146 521.9 380 65.5
PSO675G8631 Papaver somniferum HOM05D005041 ORTHO05D006003 4.0e-146 521.9 377 64.7
Ah.01g004760 Amaranthus hybridus HOM05D005041 ORTHO05D006003 8.9e-146 520.8 379 65.4
Solyc05g006470.4 Solanum lycopersicum HOM05D005041 ORTHO05D006003 1.5e-145 520.0 380 66.8
ClCG09G022250 Citrullus lanatus HOM05D005041 ORTHO05D006003 2.6e-145 519.2 388 65.2
A05p14760 Brassica napus HOM05D005041 ORTHO05D006003 3.4e-145 518.8 373 65.4
Carub.0004s1211 Capsella rubella HOM05D005041 ORTHO05D006003 1.3e-144 516.9 381 65.9
EL10Ac9g21025 Beta vulgaris HOM05D005041 ORTHO05D006003 6.4e-144 514.6 383 64.0
ECA234G0116 Erigeron canadensis HOM05D005041 ORTHO05D006003 1.4e-143 513.5 381 63.3
Migut.D00514 Erythranthe guttata HOM05D005041 ORTHO05D006003 3.2e-143 512.3 383 65.5
AL4G25850 Arabidopsis lyrata HOM05D005041 ORTHO05D006003 4.1e-143 511.9 381 65.4
AT2G30910 Arabidopsis thaliana HOM05D005041 ORTHO05D006003 7.1e-143 511.1 381 65.4
BraA05t20405Z Brassica rapa HOM05D005041 ORTHO05D006003 9.2e-143 510.8 375 64.8
Aqoxy1G01950 Aquilegia oxysepala HOM05D005041 ORTHO05D006003 2.7e-142 509.2 375 65.9
AL283U10030 Arabidopsis lyrata HOM05D005041 ORTHO05D006003 2.7e-142 509.2 381 65.1
HanXRQChr16g0518211 Helianthus annuus HOM05D005041 ORTHO05D006003 3.5e-142 508.8 381 64.3
MBI06_g08528_MAGBIO Magnolia biondii HOM05D005041 ORTHO05D006003 4.6e-142 508.4 380 64.5
Hund00824 Selenicereus undatus HOM05D005041 ORTHO05D006003 6.0e-142 508.1 377 71.9
TPR.G13543 Trifolium pratense HOM05D005041 ORTHO05D006003 6.0e-142 508.1 394 64.0
arahy.Tifrunner.gnm1.ann1.5LHA9P Arachis hypogaea HOM05D005041 ORTHO05D006003 7.8e-142 507.7 376 75.5
arahy.Tifrunner.gnm1.ann1.RC242R Arachis hypogaea HOM05D005041 ORTHO05D006003 7.8e-142 507.7 376 75.5
Lsat_1_v5_gn_4_52360 Lactuca sativa HOM05D005041 ORTHO05D006003 7.8e-142 507.7 383 63.4
Os02g0817200 Oryza sativa ssp. japonica HOM05D005041 ORTHO05D006003 7.8e-142 507.7 376 63.6
Sed0006581 Sechium edule HOM05D005041 ORTHO05D006003 1.0e-141 507.3 341 70.4
Nitab4.5_0004310g0020 Nicotiana tabacum HOM05D005041 ORTHO05D006003 1.7e-141 506.5 418 60.8
Aa31LG5G6010 Aethionema arabicum HOM05D005041 ORTHO05D006003 2.3e-141 506.1 412 63.1
Nitab4.5_0002312g0010 Nicotiana tabacum HOM05D005041 ORTHO05D006003 5.1e-141 505.0 379 75.5
SGA_v2.0_scaffold1G00710 Striga asiatica HOM05D005041 ORTHO05D006003 2.5e-140 502.7 379 63.9
SGA_v2.0_scaffold8G04656 Striga asiatica HOM05D005041 ORTHO05D006003 2.1e-139 499.6 379 63.3
Zm00001eb258930 Zea mays HOM05D005041 ORTHO05D006003 2.4e-138 496.1 376 62.0
Sc12g0003800 Simmondsia chinensis HOM05D005041 ORTHO05D006003 4.0e-138 495.4 379 72.8
Lj2A374G38 Lonicera japonica HOM05D005041 ORTHO05D006003 1.5e-137 493.4 356 68.8
Phvul.006G036500 Phaseolus vulgaris HOM05D005041 ORTHO05D006003 2.0e-137 493.0 376 73.4
Glyma.10G216300 Glycine max HOM05D005041 ORTHO05D006003 4.4e-137 491.9 338 69.8
CDE10G0970 Ceratophyllum demersum HOM05D005041 ORTHO05D006003 3.8e-136 488.8 369 63.7
AT2G31300 Arabidopsis thaliana HOM05D005041 ORTHO05D006003 1.4e-135 486.9 360 66.1
vmacro12428 Vaccinium macrocarpon HOM05D005041 ORTHO05D006003 1.4e-135 486.9 384 63.3
HPP92_025809 Vanilla planifolia HOM05D005041 ORTHO05D006003 1.2e-134 483.8 372 65.6
Dinv06276 Davidia involucrata HOM05D005041 ORTHO05D006003 2.1e-134 483.0 327 70.6
FvH4_6g37551 Fragaria vesca HOM05D005041 ORTHO05D006003 6.0e-134 481.5 281 96.1
VMungo0540G2345 Vigna mungo HOM05D005041 ORTHO05D006003 3.9e-133 478.8 335 68.4
unitig_37.g12857 Utricularia gibba HOM05D005041 ORTHO05D006003 5.1e-133 478.4 368 62.8
Duzib187G1062 Durio zibethinus HOM05D005041 ORTHO05D006003 9.0e-130 467.6 377 62.1
A04p23600 Brassica napus HOM05D005041 ORTHO05D006003 2.6e-129 466.1 391 59.3
CDE10G1309 Ceratophyllum demersum HOM05D005041 ORTHO05D006003 8.4e-128 461.1 369 62.1
C04p60050 Brassica napus HOM05D005041 ORTHO05D006003 2.1e-123 446.4 366 60.9
Thhalv10017625m.g Eutrema salsugineum HOM05D005041 ORTHO05D006003 1.1e-122 444.1 328 65.5
BolC4t27508H Brassica oleracea HOM05D005041 ORTHO05D006003 2.0e-121 439.9 376 59.0
BcaB06g28392 Brassica carinata HOM05D005041 ORTHO05D006003 3.4e-121 439.1 335 63.6
BraA04t17886Z Brassica rapa HOM05D005041 ORTHO05D006003 7.9e-118 427.9 372 58.9
Lju124A34T49 Lonicera japonica HOM05D005041 ORTHO05D006003 8.2e-115 417.9 281 69.0
SMO364G0091 Selaginella moellendorffii HOM05D005041 ORTHO05D006003 3.2e-111 406.0 377 51.5
Pp3c19_12930 Physcomitrium patens HOM05D005041 ORTHO05D006003 4.8e-107 392.1 377 56.2
Pp3c18_4810 Physcomitrium patens HOM05D005041 ORTHO05D006003 1.4e-106 390.6 383 56.9
Cpa.g.sc50.61 Carica papaya HOM05D005041 ORTHO05D006003 5.0e-104 382.1 253 71.5
Mapoly0090s0056 Marchantia polymorpha HOM05D005041 ORTHO05D006003 2.1e-102 376.7 386 51.0
Mapoly0116s0052 Marchantia polymorpha HOM05D005041 ORTHO05D006003 1.0e-101 374.4 386 48.2
AagrBONN_evm.TU.Sc2ySwM_228.2899 Anthoceros agrestis HOM05D005041 ORTHO05D006003 6.7e-101 371.7 363 51.0
Sopen05g002420 Solanum pennellii HOM05D005041 ORTHO05D006003 3.3e-100 369.4 257 68.9
Zm00001eb191400 Zea mays HOM05D005041 ORTHO05D006003 1.9e-95 353.6 253 64.8
ATR0787G051 Amborella trichopoda HOM05D005041 ORTHO05D006003 4.5e-89 332.4 190 80.5
AUR62024003 Chenopodium quinoa HOM05D005041 ORTHO05D006003 7.7e-89 331.6 303 65.7
Thhalv10017010m.g Eutrema salsugineum HOM05D005041 ORTHO05D006003 3.5e-81 306.2 376 45.5
AUR62031794 Chenopodium quinoa HOM05D005041 ORTHO05D006003 1.6e-78 297.4 306 51.6
Nn6g34435 Nelumbo nucifera HOM05D005041 ORTHO05D006003 7.5e-76 288.5 220 65.5
Sabra14G0106900 Salix brachista HOM05D005041 ORTHO05D006003 2.4e-74 283.5 218 67.4
SalBow4G0308 Salvia bowleyana HOM05D005041 ORTHO05D006003 8.0e-70 268.5 213 62.9
Actinidia12824 Actinidia chinensis HOM05D005041 ORTHO05D006003 1.3e-64 251.1 153 76.5
CBR_g18699 Chara braunii HOM05D005041 ORTHO05D006003 5.0e-64 249.2 536 31.2
Oeu032123.1 Olea europaea HOM05D005041 ORTHO05D006003 2.4e-58 230.3 146 71.2
Sopen05g002410 Solanum pennellii HOM05D005041 ORTHO05D006003 1.3e-51 208.0 275 43.6
CARHR124910 Cardamine hirsuta HOM05D005041 ORTHO05D006003 2.0e-49 200.7 110 84.5
CARHR124390 Cardamine hirsuta HOM05D005041 ORTHO05D006003 1.0e-48 198.4 110 83.6
Cfa026893 Carpinus fangiana HOM05D005041 ORTHO05D006003 3.9e-48 196.4 364 32.4
SEGI_31471 Sequoiadendron giganteum HOM05D005041 ORTHO05D006003 4.4e-44 183.0 139 61.2
SHI23137 Sapria himalayana HOM05D005041 ORTHO05D006003 6.8e-29 132.5 134 48.5
Duzib147G0812 Durio zibethinus HOM05D005041 ORTHO05D006003 3.2e-26 123.6 147 48.3
TAR383G0169 Trochodendron aralioides HOM05D005041 ORTHO05D006003 3.3e-23 113.6 68 69.1
Duzib147G0224 Durio zibethinus HOM05D005041 ORTHO05D006003 5.3e-21 106.3 57 84.2
Cre16.g648100 Chlamydomonas reinhardtii HOM05D005041 ORTHO05D006003 1.5e-20 104.8 195 32.8
Haze_27289 Corylus avellana HOM05D005041 ORTHO05D006003 2.2e-19 100.9 286 32.2
CARHR285180 Cardamine hirsuta HOM05D005041 ORTHO05D006003 7.8e-17 92.4 52 75.0
SEGI_23574 Sequoiadendron giganteum HOM05D005041 ORTHO05D006003 1.3e-16 91.7 66 62.1
Lsat_1_v5_gn_9_20280 Lactuca sativa HOM05D005041 ORTHO05D002973 1.3e-14 85.1 78 51.3
AUR62031783 Chenopodium quinoa HOM05D004756 ORTHO05D005793 1.5e-12 78.2 48 72.9
Glyma.02G162651 Glycine max HOM05D005041 ORTHO05D006003 6.4e-11 72.8 40 75.0
SEGI_36522 Sequoiadendron giganteum HOM05D005041 ORTHO05D006003 1.1e-10 72.0 52 59.6
CARHR059870 Cardamine hirsuta HOM05D005041 ORTHO05D006003 1.2e-09 68.6 50 66.0


User provided reference genes

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