Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0144881 Rosa chinensis HOM05D000344 ORTHO05D000934 6.5e-45 183.7 95 100.0
RcHm_v2.0_Chr5g0028031 Rosa chinensis HOM05D000344 ORTHO05D000934 1.6e-35 152.5 91 85.7
FAN25G0217 Fragaria x ananassa HOM05D000344 ORTHO05D000934 1.1e-33 146.4 91 83.5
FAN21G2738 Fragaria x ananassa HOM05D000344 ORTHO05D000934 1.5e-33 146.0 91 82.4
FAN16G2595 Fragaria x ananassa HOM05D000344 ORTHO05D000934 7.4e-33 143.7 91 81.3
FvH4_3g16820 Fragaria vesca HOM05D000344 ORTHO05D000934 2.2e-32 142.1 91 81.3
FAN11G1238 Fragaria x ananassa HOM05D000344 ORTHO05D000934 2.2e-32 142.1 91 81.3
Prupe.4G150400 Prunus persica HOM05D000344 ORTHO05D000934 2.4e-31 138.7 91 78.0
Glyma.13G259700 Glycine max HOM05D000344 ORTHO05D000934 2.2e-29 132.1 93 69.9
Glyma.15G248200 Glycine max HOM05D000344 ORTHO05D000934 5.0e-29 131.0 93 68.8
Glyma.06G286400 Glycine max HOM05D000344 ORTHO05D000934 1.5e-28 129.4 93 68.8
VMungo1080G0073 Vigna mungo HOM05D000344 ORTHO05D000934 2.5e-28 128.6 91 69.2
Sabra11G0089000 Salix brachista HOM05D000344 ORTHO05D000934 3.6e-27 124.8 91 69.2
Duzib268G1504 Durio zibethinus HOM05D000344 ORTHO05D000934 4.7e-27 124.4 91 70.3
Actinidia12844 Actinidia chinensis HOM05D000344 ORTHO05D000934 1.0e-26 123.2 91 65.9
Phvul.005G061400 Phaseolus vulgaris HOM05D000344 ORTHO05D000934 1.0e-26 123.2 91 65.9
Thecc.07G145500 Theobroma cacao HOM05D000344 ORTHO05D000934 1.4e-26 122.9 91 68.1
Hma1.2p1_0280F.1_g112960 Hydrangea macrophylla HOM05D000344 ORTHO05D000934 2.3e-26 122.1 91 67.0
Potri.011G095200 Populus trichocarpa HOM05D000344 ORTHO05D000934 2.3e-26 122.1 91 67.0
CANSAT56G0229 Cannabis sativa HOM05D000344 ORTHO05D000934 3.0e-26 121.7 91 67.0
Dinv26671 Davidia involucrata HOM05D000344 ORTHO05D000934 3.0e-26 121.7 91 65.9
Gohir.A11G291100 Gossypium hirsutum HOM05D000344 ORTHO05D000934 3.0e-26 121.7 91 69.2
Gorai.007G335200 Gossypium raimondii HOM05D000344 ORTHO05D000934 3.0e-26 121.7 91 69.2
MD10G1193900 Malus domestica HOM05D000344 ORTHO05D000934 3.0e-26 121.7 94 69.1
Potri.001G378900 Populus trichocarpa HOM05D000344 ORTHO05D000934 5.2e-26 120.9 91 64.8
Lj3g0013695 Lotus japonicus HOM05D000344 ORTHO05D000934 6.7e-26 120.6 94 67.0
Lalb_Chr25g0285431 Lupinus albus HOM05D000344 ORTHO05D000934 6.7e-26 120.6 91 64.8
Haze_08487 Corylus avellana HOM05D000344 ORTHO05D000934 8.8e-26 120.2 91 67.0
Eucgr.F03211 Eucalyptus grandis HOM05D000344 ORTHO05D000934 8.8e-26 120.2 91 64.8
Gohir.D11G301500 Gossypium hirsutum HOM05D000344 ORTHO05D000934 8.8e-26 120.2 91 68.1
Lalb_Chr01g0016091 Lupinus albus HOM05D000344 ORTHO05D000934 8.8e-26 120.2 91 64.8
MD05G1206800 Malus domestica HOM05D000344 ORTHO05D000934 1.5e-25 119.4 94 68.1
QL04p070131 Quercus lobata HOM05D000344 ORTHO05D000934 1.5e-25 119.4 91 67.0
Cfa019460 Carpinus fangiana HOM05D000344 ORTHO05D000934 2.6e-25 118.6 91 65.9
Cpa.g.sc77.86 Carica papaya HOM05D000344 ORTHO05D000934 3.3e-25 118.2 91 67.0
Duzib213G1061 Durio zibethinus HOM05D000344 ORTHO05D000934 4.4e-25 117.9 91 65.9
vmacro12009 Vaccinium macrocarpon HOM05D000344 ORTHO05D000934 5.7e-25 117.5 91 63.7
Ca_03395_v3 Cicer arietinum L. HOM05D000344 ORTHO05D000934 9.7e-25 116.7 94 63.8
arahy.Tifrunner.gnm1.ann1.J12N8U Arachis hypogaea HOM05D000344 ORTHO05D000934 1.3e-24 116.3 104 59.6
CSS0004308 Camellia sinensis var. sinensis HOM05D000344 ORTHO05D000934 1.7e-24 115.9 91 63.7
CSS0039814 Camellia sinensis var. sinensis HOM05D000344 ORTHO05D000934 1.7e-24 115.9 91 63.7
TAR627G0265 Trochodendron aralioides HOM05D000344 ORTHO05D000934 2.2e-24 115.5 91 63.7
Gohir.D01G030100 Gossypium hirsutum HOM05D000344 ORTHO05D000934 3.7e-24 114.8 91 64.8
Nn4g26578 Nelumbo nucifera HOM05D000344 ORTHO05D000934 3.7e-24 114.8 91 62.6
Dinv13319 Davidia involucrata HOM05D000344 ORTHO05D000934 4.8e-24 114.4 91 62.6
Rhsim06G0185400 Rhododendron simsii HOM05D000344 ORTHO05D000934 4.8e-24 114.4 91 60.4
Actinidia04587 Actinidia chinensis HOM05D000344 ORTHO05D000934 8.2e-24 113.6 91 61.5
MBI10_g30414_MAGBIO Magnolia biondii HOM05D000344 ORTHO05D000934 8.2e-24 113.6 91 62.6
arahy.Tifrunner.gnm1.ann1.0B7JEM Arachis hypogaea HOM05D000344 ORTHO05D000934 1.4e-23 112.8 104 59.6
Nn3g20761 Nelumbo nucifera HOM05D000344 ORTHO05D000934 1.4e-23 112.8 91 62.6
Gohir.A01G042100 Gossypium hirsutum HOM05D000344 ORTHO05D000934 3.1e-23 111.7 91 62.6
Gorai.002G039300 Gossypium raimondii HOM05D000344 ORTHO05D000934 4.1e-23 111.3 91 62.6
MBI07_g26348_MAGBIO Magnolia biondii HOM05D000344 ORTHO05D000934 5.3e-23 110.9 90 61.1
PSO675G7780 Papaver somniferum HOM05D000344 ORTHO05D000934 1.2e-22 109.8 93 64.5
THA.LOC104813982 Tarenaya hassleriana HOM05D000344 ORTHO05D000934 1.6e-22 109.4 92 60.9
PGR031G3787 Punica granatum HOM05D000344 ORTHO05D000934 2.7e-22 108.6 96 59.4
PSO541G2670 Papaver somniferum HOM05D000344 ORTHO05D000934 5.9e-22 107.5 93 63.4
Manes.15G100900 Manihot esculenta HOM05D000344 ORTHO05D000934 7.7e-22 107.1 97 60.8
Medtr2g071620 Medicago truncatula HOM05D000344 ORTHO05D000934 7.7e-22 107.1 104 57.7
THA.LOC104813300 Tarenaya hassleriana HOM05D000344 ORTHO05D000934 1.0e-21 106.7 92 58.7
Psat1g009520 Pisum sativum HOM05D000344 ORTHO05D000934 2.2e-21 105.5 100 60.0
ECA234G2148 Erigeron canadensis HOM05D000344 ORTHO05D000934 6.5e-21 104.0 94 59.6
Lj8C142T7 Lonicera japonica HOM05D000344 ORTHO05D000934 8.5e-21 103.6 127 48.8
Peaxi162Scf00111g00921 Petunia axillaris HOM05D000344 ORTHO05D000934 1.1e-20 103.2 93 57.0
Nitab4.5_0001140g0260 Nicotiana tabacum HOM05D000344 ORTHO05D000934 7.2e-20 100.5 95 57.9
DCAR_013790 Daucus carota HOM05D000344 ORTHO05D000934 9.4e-20 100.1 91 56.0
Nitab4.5_0006614g0020 Nicotiana tabacum HOM05D000344 ORTHO05D000934 1.6e-19 99.4 95 57.9
DCAR_019622 Daucus carota HOM05D000344 ORTHO05D000934 2.1e-19 99.0 91 56.0
CAN.G375.91 Capsicum annuum HOM05D000344 ORTHO05D000934 3.6e-19 98.2 93 57.0
Ciclev10018666m.g Citrus clementina HOM05D000344 ORTHO05D000934 3.6e-19 98.2 118 49.2
AUR62043084 Chenopodium quinoa HOM05D000344 ORTHO05D000934 4.7e-19 97.8 92 55.4
Solyc07g061780.4 Solanum lycopersicum HOM05D000344 ORTHO05D000934 6.1e-19 97.4 93 57.0
AUR62037966 Chenopodium quinoa HOM05D000344 ORTHO05D000934 8.0e-19 97.1 92 54.3
HanXRQChr13g0389811 Helianthus annuus HOM05D000344 ORTHO05D000934 1.0e-18 96.7 93 54.8
Sopen07g030100 Solanum pennellii HOM05D000344 ORTHO05D000934 1.0e-18 96.7 93 57.0
HanXRQChr12g0373551 Helianthus annuus HOM05D000344 ORTHO05D000934 1.4e-18 96.3 94 52.1
Zm00001eb238660 Zea mays HOM05D000344 ORTHO05D000934 2.3e-18 95.5 103 48.5
CDE06G1736 Ceratophyllum demersum HOM05D000344 ORTHO05D000934 4.0e-18 94.7 92 54.3
Zm00001eb204570 Zea mays HOM05D000344 ORTHO05D000934 4.0e-18 94.7 103 50.5
CDE02G4662 Ceratophyllum demersum HOM05D000344 ORTHO05D000934 5.2e-18 94.4 92 55.4
Lsat_1_v5_gn_9_101220 Lactuca sativa HOM05D000344 ORTHO05D000934 1.2e-17 93.2 106 48.1
Sc16g0007900 Simmondsia chinensis HOM05D000344 ORTHO05D000934 1.2e-17 93.2 116 45.7
Ah.04g163820 Amaranthus hybridus HOM05D000344 ORTHO05D000934 4.4e-17 91.3 92 56.5
Hund02316 Selenicereus undatus HOM05D000344 ORTHO05D000934 9.8e-17 90.1 101 47.5
EL10Ac4g08492 Beta vulgaris HOM05D000344 ORTHO05D000934 2.2e-16 89.0 92 48.9
Migut.L01141 Erythranthe guttata HOM05D000344 ORTHO05D000934 1.1e-15 86.7 93 49.5
Os02g0244300 Oryza sativa ssp. japonica HOM05D000344 ORTHO05D000934 1.1e-15 86.7 103 43.7
Aa31LG7G1910 Aethionema arabicum HOM05D000344 ORTHO05D000934 7.7e-14 80.5 62 66.1
AL1G29310 Arabidopsis lyrata HOM05D000344 ORTHO05D000934 2.9e-13 78.6 58 69.0
AT1G17110 Arabidopsis thaliana HOM05D000344 ORTHO05D000934 3.8e-13 78.2 61 67.2
C05p15470 Brassica napus HOM05D000344 ORTHO05D000934 3.8e-13 78.2 130 40.8
CARHR017650 Cardamine hirsuta HOM05D000344 ORTHO05D000934 3.8e-13 78.2 61 65.6
BcaC07g38831 Brassica carinata HOM05D000344 ORTHO05D000934 5.0e-13 77.8 134 39.6
C08p17710 Brassica napus HOM05D000344 ORTHO05D000934 5.0e-13 77.8 134 39.6
BolC8t49397H Brassica oleracea HOM05D000344 ORTHO05D000934 5.0e-13 77.8 134 39.6
Sp1g15230 Schrenkiella parvula HOM05D000344 ORTHO05D000934 1.1e-12 76.6 55 70.9
BcaB03g13017 Brassica carinata HOM05D000344 ORTHO05D000934 1.5e-12 76.3 136 39.0
A06p13010 Brassica napus HOM05D000344 ORTHO05D000934 1.5e-12 76.3 55 70.9
BraA06t24459Z Brassica rapa HOM05D000344 ORTHO05D000934 1.5e-12 76.3 55 70.9
BraA08t35038Z Brassica rapa HOM05D000344 ORTHO05D000934 1.5e-12 76.3 58 69.0
Carub.0001s1684 Capsella rubella HOM05D000344 ORTHO05D000934 1.5e-12 76.3 58 67.2
BolC5t30256H Brassica oleracea HOM05D000344 ORTHO05D000934 1.9e-12 75.9 130 39.2
Thhalv10006749m.g Eutrema salsugineum HOM05D000344 ORTHO05D000934 3.2e-12 75.1 58 67.2
A08p31120 Brassica napus HOM05D000344 ORTHO05D000934 9.5e-12 73.6 58 67.2
BcaB02g06686 Brassica carinata HOM05D000344 ORTHO05D000934 3.0e-10 68.6 56 66.1
ATR1091G028 Amborella trichopoda HOM05D000344 ORTHO05D000934 8.8e-10 67.0 92 41.3
unitig_22.g6533 Utricularia gibba HOM05D000344 ORTHO05D000934 3.7e-08 61.6 91 40.7
HPP92_023220 Vanilla planifolia HOM05D000344 ORTHO05D000934 4.9e-08 61.2 83 38.6
BcaC05g25668 Brassica carinata HOM05D000344 ORTHO05D000934 3.5e-06 55.1 103 38.8


User provided reference genes

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