Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0141751 Rosa chinensis HOM05D005962 ORTHO05D007325 4.1e-131 471.5 250 100.0
FvH4_6g32730 Fragaria vesca HOM05D005962 ORTHO05D007325 2.7e-122 442.2 250 90.4
FAN09G1055 Fragaria x ananassa HOM05D005962 ORTHO05D007325 6.6e-121 437.6 250 92.4
FAN05G1114 Fragaria x ananassa HOM05D005962 ORTHO05D007325 3.3e-120 435.3 250 89.2
FAN02G1749 Fragaria x ananassa HOM05D005962 ORTHO05D007325 5.6e-120 434.5 250 88.0
Prupe.3G054900 Prunus persica HOM05D005962 ORTHO05D007325 4.4e-109 398.3 253 79.4
Phvul.010G143300 Phaseolus vulgaris HOM05D005962 ORTHO05D007325 7.5e-101 370.9 252 73.8
TAR623G1297 Trochodendron aralioides HOM05D005962 ORTHO05D007325 2.9e-100 369.0 246 73.2
Sabra17G0126400 Salix brachista HOM05D005962 ORTHO05D007325 2.4e-99 365.9 260 70.8
Haze_15888 Corylus avellana HOM05D005962 ORTHO05D007325 4.1e-99 365.2 253 72.3
Glyma.08G199200 Glycine max HOM05D005962 ORTHO05D007325 4.1e-99 365.2 252 73.4
Atru.chr12.732 Acer truncatum HOM05D005962 ORTHO05D007325 9.2e-99 364.0 252 73.0
VMungo0331G0822 Vigna mungo HOM05D005962 ORTHO05D007325 6.0e-98 361.3 257 72.4
CANSAT21G1984 Cannabis sativa HOM05D005962 ORTHO05D007325 1.0e-97 360.5 254 71.7
Sed0025844 Sechium edule HOM05D005962 ORTHO05D007325 3.0e-97 359.0 251 72.9
CiPaw.02G144100 Carya illinoinensis HOM05D005962 ORTHO05D007325 3.9e-97 358.6 256 71.5
Actinidia32123 Actinidia chinensis HOM05D005962 ORTHO05D007325 1.9e-96 356.3 243 72.4
Lj3g0005277 Lotus japonicus HOM05D005962 ORTHO05D007325 4.3e-96 355.1 253 70.4
GSVIVG01016927001 Vitis vinifera HOM05D005962 ORTHO05D007325 7.3e-96 354.4 227 75.3
Nn4g25123 Nelumbo nucifera HOM05D005962 ORTHO05D007325 9.5e-96 354.0 251 69.3
QL08p056642 Quercus lobata HOM05D005962 ORTHO05D007325 9.5e-96 354.0 252 71.4
COL.COLO4_30547 Corchorus olitorius HOM05D005962 ORTHO05D007325 1.2e-95 353.6 260 69.6
vmacro18833 Vaccinium macrocarpon HOM05D005962 ORTHO05D007325 1.2e-95 353.6 250 69.6
CsaV3_3G023410 Cucumis sativus L. HOM05D005962 ORTHO05D007325 2.1e-95 352.8 257 70.8
ClCG07G013490 Citrullus lanatus HOM05D005962 ORTHO05D007325 2.8e-95 352.4 258 70.5
Rhsim08G0229500 Rhododendron simsii HOM05D005962 ORTHO05D007325 2.8e-95 352.4 250 70.4
Thecc.06G103400 Theobroma cacao HOM05D005962 ORTHO05D007325 6.2e-95 351.3 259 68.7
Duzib192G0276 Durio zibethinus HOM05D005962 ORTHO05D007325 8.1e-95 350.9 254 70.9
arahy.Tifrunner.gnm1.ann1.FEFU12 Arachis hypogaea HOM05D005962 ORTHO05D007325 1.1e-94 350.5 254 68.9
Lalb_Chr01g0013231 Lupinus albus HOM05D005962 ORTHO05D007325 1.8e-94 349.7 256 68.8
Gohir.D01G215700 Gossypium hirsutum HOM05D005962 ORTHO05D007325 2.3e-94 349.4 254 68.9
Manes.04G136400 Manihot esculenta HOM05D005962 ORTHO05D007325 4.0e-94 348.6 251 71.3
Oeu024256.1 Olea europaea HOM05D005962 ORTHO05D007325 4.0e-94 348.6 247 70.9
CSS0027495 Camellia sinensis var. sinensis HOM05D005962 ORTHO05D007325 6.8e-94 347.8 225 73.3
Sopen12g023060 Solanum pennellii HOM05D005962 ORTHO05D007325 6.8e-94 347.8 242 74.4
MBI01_g35895_MAGBIO Magnolia biondii HOM05D005962 ORTHO05D007325 8.9e-94 347.4 250 70.0
Gohir.A10G063800 Gossypium hirsutum HOM05D005962 ORTHO05D007325 1.2e-93 347.1 259 68.7
Psat4g195960 Pisum sativum HOM05D005962 ORTHO05D007325 1.2e-93 347.1 251 69.3
Gohir.D10G065400 Gossypium hirsutum HOM05D005962 ORTHO05D007325 2.0e-93 346.3 259 69.5
arahy.Tifrunner.gnm1.ann1.M52QXX Arachis hypogaea HOM05D005962 ORTHO05D007325 3.4e-93 345.5 229 72.9
Ciclev10026335m.g Citrus clementina HOM05D005962 ORTHO05D007325 3.4e-93 345.5 251 69.3
Peaxi162Scf00038g01151 Petunia axillaris HOM05D005962 ORTHO05D007325 3.4e-93 345.5 250 72.4
Manes.11G030300 Manihot esculenta HOM05D005962 ORTHO05D007325 5.8e-93 344.7 251 68.5
DCAR_007600 Daucus carota HOM05D005962 ORTHO05D007325 9.9e-93 344.0 252 67.9
Gorai.002G261900 Gossypium raimondii HOM05D005962 ORTHO05D007325 9.9e-93 344.0 253 68.0
Aqoxy2G04031 Aquilegia oxysepala HOM05D005962 ORTHO05D007325 1.3e-92 343.6 245 71.0
Gorai.011G069400 Gossypium raimondii HOM05D005962 ORTHO05D007325 2.2e-92 342.8 233 73.4
MELO3C013015.2 Cucumis melo HOM05D005962 ORTHO05D007325 2.9e-92 342.4 286 64.3
Solyc12g044640.2 Solanum lycopersicum HOM05D005962 ORTHO05D007325 3.8e-92 342.0 242 71.1
Rhsim08G0229700 Rhododendron simsii HOM05D005962 ORTHO05D007325 4.9e-92 341.7 263 67.7
Cc00_g23930 Coffea canephora HOM05D005962 ORTHO05D007325 1.4e-91 340.1 243 70.8
Medtr8g015230 Medicago truncatula HOM05D005962 ORTHO05D007325 5.4e-91 338.2 251 67.7
PGSC0003DMG400026839 Solanum tuberosum HOM05D005962 ORTHO05D007325 7.1e-91 337.8 242 71.5
TWI12G1051 Tripterygium wilfordii HOM05D005962 ORTHO05D007325 9.2e-91 337.4 250 66.4
PGSC0003DMG401002516 Solanum tuberosum HOM05D005962 ORTHO05D007325 3.5e-90 335.5 245 70.2
Hma1.2p1_0764F.1_g214960 Hydrangea macrophylla HOM05D005962 ORTHO05D007325 7.8e-90 334.3 243 70.8
CAN.G1143.30 Capsicum annuum HOM05D005962 ORTHO05D007325 1.0e-89 334.0 229 71.6
MSTRG.11013 Avicennia marina HOM05D005962 ORTHO05D007325 1.7e-89 333.2 236 69.9
Hma1.2p1_2308F.1_g319480 Hydrangea macrophylla HOM05D005962 ORTHO05D007325 3.9e-89 332.0 243 70.4
PSO210G0258 Papaver somniferum HOM05D005962 ORTHO05D007325 5.1e-89 331.6 255 65.5
Sc19g0007830 Simmondsia chinensis HOM05D005962 ORTHO05D007325 6.6e-89 331.3 244 67.2
Migut.I00971 Erythranthe guttata HOM05D005962 ORTHO05D007325 3.3e-88 328.9 229 72.1
Nitab4.5_0002423g0030 Nicotiana tabacum HOM05D005962 ORTHO05D007325 3.3e-88 328.9 256 68.4
EL10Ac3g07358 Beta vulgaris HOM05D005962 ORTHO05D007325 4.3e-88 328.6 245 68.2
AUR62020986 Chenopodium quinoa HOM05D005962 ORTHO05D007325 5.6e-88 328.2 245 66.9
Ca_23283_v3 Cicer arietinum L. HOM05D005962 ORTHO05D007325 7.3e-88 327.8 255 67.1
PSO210G7608 Papaver somniferum HOM05D005962 ORTHO05D007325 7.3e-88 327.8 244 66.0
SalBow6G5073 Salvia bowleyana HOM05D005962 ORTHO05D007325 7.3e-88 327.8 228 71.9
ECA248G1573 Erigeron canadensis HOM05D005962 ORTHO05D007325 2.1e-87 326.2 246 67.5
PGR102G2175 Punica granatum HOM05D005962 ORTHO05D007325 3.6e-87 325.5 251 66.5
Eucgr.J02602 Eucalyptus grandis HOM05D005962 ORTHO05D007325 6.2e-87 324.7 257 65.4
HPP92_007682 Vanilla planifolia HOM05D005962 ORTHO05D007325 2.4e-86 322.8 230 67.8
Sopen03g040020 Solanum pennellii HOM05D005962 ORTHO05D007325 4.0e-86 322.0 245 68.6
Nitab4.5_0001172g0180 Nicotiana tabacum HOM05D005962 ORTHO05D007325 5.2e-86 321.6 244 69.7
Lsat_1_v5_gn_5_181040 Lactuca sativa HOM05D005962 ORTHO05D007325 9.9e-85 317.4 244 66.4
AUR62018448 Chenopodium quinoa HOM05D005962 ORTHO05D007325 1.4e-83 313.5 245 64.5
unitig_32.g10986 Utricularia gibba HOM05D005962 ORTHO05D007325 1.4e-83 313.5 245 65.3
Aa31LG8G8050 Aethionema arabicum HOM05D005962 ORTHO05D007325 9.3e-83 310.8 233 65.2
Os06g0217500 Oryza sativa ssp. japonica HOM05D005962 ORTHO05D007325 9.3e-83 310.8 238 63.4
Dinv37956 Davidia involucrata HOM05D005962 ORTHO05D007325 6.0e-82 308.1 207 73.9
Zm00001eb372970 Zea mays HOM05D005962 ORTHO05D007325 1.1e-80 303.9 246 62.6
Sp3g19410 Schrenkiella parvula HOM05D005962 ORTHO05D007325 1.5e-80 303.5 234 64.1
AT3G21350 Arabidopsis thaliana HOM05D005962 ORTHO05D007325 2.5e-80 302.8 240 66.2
CARHR097270 Cardamine hirsuta HOM05D005962 ORTHO05D007325 3.3e-80 302.4 238 62.6
Thhalv10021373m.g Eutrema salsugineum HOM05D005962 ORTHO05D007325 3.3e-80 302.4 231 65.8
AL3G35400 Arabidopsis lyrata HOM05D005962 ORTHO05D007325 5.6e-80 301.6 233 64.4
Carub.0003s2138 Capsella rubella HOM05D005962 ORTHO05D007325 6.2e-79 298.1 239 62.3
THA.LOC104805924 Tarenaya hassleriana HOM05D005962 ORTHO05D007325 1.1e-78 297.4 257 60.3
BcaB06g26231 Brassica carinata HOM05D005962 ORTHO05D007325 1.8e-78 296.6 253 61.3
SGA_v2.0_scaffold45G16998 Striga asiatica HOM05D005962 ORTHO05D007325 2.4e-78 296.2 183 76.5
C05p42110 Brassica napus HOM05D005962 ORTHO05D007325 5.3e-78 295.0 234 64.5
Solyc03g121210.4 Solanum lycopersicum HOM05D005962 ORTHO05D007325 1.2e-77 293.9 207 70.0
A05p27250 Brassica napus HOM05D005962 ORTHO05D007325 2.0e-77 293.1 234 64.5
HanXRQChr15g0489361 Helianthus annuus HOM05D005962 ORTHO05D007325 3.4e-77 292.4 244 62.7
BcaC05g28175 Brassica carinata HOM05D005962 ORTHO05D007325 7.6e-77 291.2 233 62.2
Gohir.A01G226000 Gossypium hirsutum HOM05D005962 ORTHO05D007325 1.7e-76 290.0 190 74.7
SHI11207 Sapria himalayana HOM05D005962 ORTHO05D007325 2.2e-76 289.7 231 61.9
BraA05t21615Z Brassica rapa HOM05D005962 ORTHO05D007325 8.4e-76 287.7 244 62.3
BolC5t32941H Brassica oleracea HOM05D005962 ORTHO05D007325 1.9e-72 276.6 271 55.7
Cpa.g.sc131.1 Carica papaya HOM05D005962 ORTHO05D007325 5.3e-70 268.5 172 76.7
ATR0705G221 Amborella trichopoda HOM05D005962 ORTHO05D007325 9.0e-70 267.7 159 78.6
Migut.I00969 Erythranthe guttata HOM05D005962 ORTHO05D007325 1.9e-67 260.0 140 85.0
Migut.O00801 Erythranthe guttata HOM05D005962 ORTHO05D007325 3.5e-66 255.8 162 75.3
Ah.04g150140 Amaranthus hybridus HOM05D005962 ORTHO05D007325 1.8e-65 253.4 154 77.3
TPR.G39766 Trifolium pratense HOM05D005962 ORTHO05D007325 1.0e-60 237.7 184 64.1
Cfa019373 Carpinus fangiana HOM05D005962 ORTHO05D007325 4.2e-59 232.3 169 70.4
Pp3c11_22580 Physcomitrium patens HOM05D005962 ORTHO05D007325 1.1e-56 224.2 246 52.4
AagrBONN_evm.TU.Sc2ySwM_362.1658 Anthoceros agrestis HOM05D005962 ORTHO05D007325 3.3e-56 222.6 172 62.2
MD14G1079700 Malus domestica HOM05D005962 ORTHO05D007325 4.3e-56 222.2 175 67.4
Lj5A50T68 Lonicera japonica HOM05D005962 ORTHO05D007325 2.4e-54 216.5 171 65.5
Mapoly0012s0176 Marchantia polymorpha HOM05D005962 ORTHO05D007325 4.1e-54 215.7 186 58.1
SMO143G0120 Selaginella moellendorffii HOM05D005962 ORTHO05D007325 1.2e-50 204.1 170 58.8
Medtr0361s0030 Medicago truncatula HOM05D005962 ORTHO05D007325 5.3e-38 162.2 103 74.8
CBR_g22489 Chara braunii HOM05D005962 ORTHO05D007325 1.2e-37 161.0 246 41.1
QL05p018100 Quercus lobata HOM05D005962 ORTHO05D007325 5.2e-33 145.6 93 76.3
Lj5C50T14 Lonicera japonica HOM05D005962 ORTHO05D007325 1.2e-29 134.4 76 76.3
Lj3g0016976 Lotus japonicus HOM05D005962 ORTHO05D007325 2.0e-29 133.7 184 47.3
SEGI_18792 Sequoiadendron giganteum HOM05D005962 ORTHO05D007325 5.9e-29 132.1 80 77.5
Lsat_1_v5_gn_2_99820 Lactuca sativa HOM05D005962 ORTHO05D007325 4.0e-25 119.4 85 67.1
Cfa019374 Carpinus fangiana HOM05D005962 ORTHO05D007325 8.8e-25 118.2 77 74.0
RcHm_v2.0_Chr5g0064381 Rosa chinensis HOM05D005962 ORTHO05D007325 2.6e-24 116.7 90 62.2
TAR624G0741 Trochodendron aralioides HOM05D005962 ORTHO05D007325 1.1e-22 111.3 146 48.6
TAR623G1541 Trochodendron aralioides HOM05D005962 ORTHO05D007325 5.0e-20 102.4 58 82.8
Dinv30416 Davidia involucrata HOM05D005962 ORTHO05D007325 8.5e-20 101.7 81 59.3
PRCOL_00006676 Prasinoderma coloniale HOM05D001184 ORTHO05D008450 2.7e-18 96.7 147 38.8
Zm00001eb084330 Zea mays HOM05D005962 ORTHO05D007325 9.8e-16 88.2 57 70.2
Zm00001eb192830 Zea mays HOM05D005962 ORTHO05D007325 4.8e-15 85.9 63 61.9
Ah.04g150130 Amaranthus hybridus HOM05D000535 ORTHO05D000427 2.4e-14 83.6 90 52.2
Nitab4.5_0008212g0010 Nicotiana tabacum HOM05D005962 ORTHO05D007325 5.4e-14 82.4 191 35.1
Pp3c7_2870 Physcomitrium patens HOM05D005962 ORTHO05D007325 7.0e-14 82.0 173 37.0
TAR636G3265 Trochodendron aralioides HOM05D005962 ORTHO05D007325 5.9e-13 79.0 47 74.5
BraA09t39590Z Brassica rapa HOM05D002393 ORTHO05D002845 7.2e-11 72.0 64 56.2
Cpa.g.c26718.1 Carica papaya HOM05D005962 ORTHO05D007325 6.8e-09 65.5 45 73.3
C09p14660 Brassica napus HOM05D017738 ORTHO05D042708 7.0e-06 55.5 94 36.2
BolC9t54371H Brassica oleracea HOM05D017738 ORTHO05D042708 7.0e-06 55.5 94 36.2
Cfa023417 Carpinus fangiana HOM05D005962 ORTHO05D123568 9.2e-06 55.1 158 29.1


User provided reference genes

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